from .metric_utils import compute_classification_metrics, compute_regression_metrics
from .plot_utils import (
    plot_pr_curve,
    plot_roc_curve,
    plot_regression,
    plot_residuals,
    plot_qq,
)
from .bio_utils import AA_ALPHABET, AA_ALPHABET_WITH_EXTRAS, AA_ALPHABET_INFERENCE
from .results_logger import ResultsLogger
from .ProtEnc import protenc
from .optuna_sweeper import create_optuna_distribution_from_override
from .data_utils import (
    get_default_config,
    get_default_config_path,
    parse_sequence_chains_to_single_string,
    load_sequences,
)
from .setup_utils import init_hydra_config
from .loss import loss_funcs
from .resolvers import register_resolvers

__all__ = [
    "ResultsLogger",
    "register_resolvers",
    "compute_classification_metrics",
    "compute_regression_metrics",
    "plot_pr_curve",
    "plot_roc_curve",
    "plot_regression",
    "plot_residuals",
    "plot_qq",
    "AA_ALPHABET",
    "AA_ALPHABET_WITH_EXTRAS",
    "AA_ALPHABET_INFERENCE",
    "protenc",
    "create_optuna_distribution_from_override",
    "init_hydra_config",
    "get_default_config",
    "get_default_config_path",
    "parse_sequence_chains_to_single_string",
    "loss_funcs",
    "load_sequences",
]
