@inproceedings{hu2022x,
  title={X-mir: Explainable medical image retrieval},
  author={Hu, Brian and Vasu, Bhavan and Hoogs, Anthony},
  booktitle={Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision},
  pages={440--450},
  year={2022}
}
@article{dosovitskiy2020image,
  title={An image is worth 16x16 words: Transformers for image recognition at scale},
  author={Dosovitskiy, Alexey and Beyer, Lucas and Kolesnikov, Alexander and Weissenborn, Dirk and Zhai, Xiaohua and Unterthiner, Thomas and Dehghani, Mostafa and Minderer, Matthias and Heigold, Georg and Gelly, Sylvain and others},
  journal={arXiv preprint arXiv:2010.11929},
  year={2020}
}
@inproceedings{
dosovitskiy2021an,
title={An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale},
author={Alexey Dosovitskiy and Lucas Beyer and Alexander Kolesnikov and Dirk Weissenborn and Xiaohua Zhai and Thomas Unterthiner and Mostafa Dehghani and Matthias Minderer and Georg Heigold and Sylvain Gelly and Jakob Uszkoreit and Neil Houlsby},
booktitle={International Conference on Learning Representations},
year={2021},
url={https://openreview.net/forum?id=YicbFdNTTy}
}
@article{loshchilov2017decoupled,
  title={Decoupled weight decay regularization},
  author={Loshchilov, Ilya and Hutter, Frank},
  journal={arXiv preprint arXiv:1711.05101},
  year={2017}
}
@inproceedings{xuan1995segmentation,
  title={Segmentation of magnetic resonance brain image: integrating region growing and edge detection},
  author={Xuan, Jianhua and Adali, T{\"u}lay and Wang, Yue},
  booktitle={Proceedings., international conference on image processing},
  volume={3},
  pages={544--547},
  year={1995},
  organization={IEEE}
}
@article{manzari2023medvit,
  title={MedViT: a robust vision transformer for generalized medical image classification},
  author={Manzari, Omid Nejati and Ahmadabadi, Hamid and Kashiani, Hossein and Shokouhi, Shahriar B and Ayatollahi, Ahmad},
  journal={Computers in Biology and Medicine},
  volume={157},
  pages={106791},
  year={2023},
  publisher={Elsevier}
}
@article{barhoumi2021skin,
  title={Skin lesion image retrieval using transfer learning-based approach for query-driven distance recommendation},
  author={Barhoumi, Walid and Khelifa, Afifa},
  journal={Computers in biology and medicine},
  volume={137},
  pages={104825},
  year={2021},
  publisher={Elsevier}
}
@article{tschandl2019diagnostic,
  title={Diagnostic accuracy of content-based dermatoscopic image retrieval with deep classification features},
  author={Tschandl, Philipp and Argenziano, Giuseppe and Razmara, Majid and Yap, Jordan},
  journal={British Journal of Dermatology},
  volume={181},
  number={1},
  pages={155--165},
  year={2019},
  publisher={Blackwell Publishing Ltd Oxford, UK}
}
@inproceedings{allegretti2021supporting,
  title={Supporting skin lesion diagnosis with content-based image retrieval},
  author={Allegretti, Stefano and Bolelli, Federico and Pollastri, Federico and Longhitano, Sabrina and Pellacani, Giovanni and Grana, Costantino},
  booktitle={2020 25th International Conference on Pattern Recognition (ICPR)},
  pages={8053--8060},
  year={2021},
  organization={IEEE}
}
@article{shamna2022content,
  title={Content-based medical image retrieval by spatial matching of visual words},
  author={Shamna, P and Govindan, VK and Nazeer, KA Abdul},
  journal={Journal of King Saud University-Computer and Information Sciences},
  volume={34},
  number={2},
  pages={58--71},
  year={2022},
  publisher={Elsevier}
}
@article{qayyum2017medical,
  title={Medical image retrieval using deep convolutional neural network},
  author={Qayyum, Adnan and Anwar, Syed Muhammad and Awais, Muhammad and Majid, Muhammad},
  journal={Neurocomputing},
  volume={266},
  pages={8--20},
  year={2017},
  publisher={Elsevier}
}
@article{chung2017learning,
  title={Learning deep representations of medical images using siamese CNNs with application to content-based image retrieval},
  author={Chung, Yu-An and Weng, Wei-Hung},
  journal={arXiv preprint arXiv:1711.08490},
  year={2017}
}
@inproceedings{ayyachamy2019medical,
  title={Medical image retrieval using Resnet-18},
  author={Ayyachamy, Swarnambiga and Alex, Varghese and Khened, Mahendra and Krishnamurthi, Ganapathy},
  booktitle={Medical imaging 2019: imaging informatics for healthcare, research, and applications},
  volume={10954},
  pages={233--241},
  year={2019},
  organization={SPIE}
}
@article{owais2019effective,
  title={Effective diagnosis and treatment through content-based medical image retrieval (CBMIR) by using artificial intelligence},
  author={Owais, Muhammad and Arsalan, Muhammad and Choi, Jiho and Park, Kang Ryoung},
  journal={Journal of clinical medicine},
  volume={8},
  number={4},
  pages={462},
  year={2019},
  publisher={MDPI}
}
@article{swati2019content,
  title={Content-based brain tumor retrieval for MR images using transfer learning},
  author={Swati, Zar Nawab Khan and Zhao, Qinghua and Kabir, Muhammad and Ali, Farman and Ali, Zakir and Ahmed, Saeed and Lu, Jianfeng},
  journal={IEEE Access},
  volume={7},
  pages={17809--17822},
  year={2019},
  publisher={IEEE}
}
@inproceedings{bressan2018doctor,
  title={DOCToR: the role of deep features in content-based mammographic image retrieval},
  author={Bressan, Rafael S and Alves, Daniel HA and Valerio, Lucas M and Bugatti, Pedro H and Saito, Priscila TM},
  booktitle={2018 IEEE 31st International Symposium on Computer-Based Medical Systems (CBMS)},
  pages={158--163},
  year={2018},
  organization={IEEE}
}
@article{karakasis2015image,
  title={Image moment invariants as local features for content based image retrieval using the bag-of-visual-words model},
  author={Karakasis, Evangelos G and Amanatiadis, Angelos and Gasteratos, Antonios and Chatzichristofis, Savvas A},
  journal={Pattern Recognition Letters},
  volume={55},
  pages={22--27},
  year={2015},
  publisher={Elsevier}
}
@inproceedings{ramamurthy2012cbmir,
  title={CBMIR: content based medical image retrieval system using texture and intensity for dental images},
  author={Ramamurthy, B and Chandran, KR and Meenakshi, VR and Shilpa, V},
  booktitle={Eco-friendly Computing and Communication Systems: International Conference, ICECCS 2012, Kochi, India, August 9-11, 2012. Proceedings},
  pages={125--134},
  year={2012},
  organization={Springer}
}
@inproceedings{jai2010content,
  title={Content based medical image retrieval: use of generalized gaussian density to model BEMD’s IMF},
  author={Jai-Andaloussi, Said and Lamard, Mathieu and Cazuguel, Guy and Tairi, Hamid and Meknassi, Mohamed and Cochener, B{\'e}atrice and Roux, Christian},
  booktitle={World Congress on Medical Physics and Biomedical Engineering, September 7-12, 2009, Munich, Germany: Vol. 25/4 Image Processing, Biosignal Processing, Modelling and Simulation, Biomechanics},
  pages={1249--1252},
  year={2010},
  organization={Springer}
}
@inproceedings{zhang2008shape,
  title={Shape feature extraction using Fourier descriptors with brightness in content-based medical image retrieval},
  author={Zhang, Gang and Ma, Zong Min and Tong, Qiang and He, Ying and Zhao, Tienan},
  booktitle={2008 international conference on intelligent information hiding and multimedia signal processing},
  pages={71--74},
  year={2008},
  organization={IEEE}
}
@inproceedings{sklan2015toward,
  title={Toward content-based image retrieval with deep convolutional neural networks},
  author={Sklan, Judah ES and Plassard, Andrew J and Fabbri, Daniel and Landman, Bennett A},
  booktitle={Medical Imaging 2015: Biomedical Applications in Molecular, Structural, and Functional Imaging},
  volume={9417},
  pages={633--638},
  year={2015},
  organization={SPIE}
}
@article{zuo2022vision,
  title={Vision transformers for dense prediction: A survey},
  author={Zuo, Shuangquan and Xiao, Yun and Chang, Xiaojun and Wang, Xuanhong},
  journal={Knowledge-Based Systems},
  volume={253},
  pages={109552},
  year={2022},
  publisher={Elsevier}
}
@article{hwang2012medical,
  title={Medical image retrieval: past and present},
  author={Hwang, Kyung Hoon and Lee, Haejun and Choi, Duckjoo},
  journal={Healthcare informatics research},
  volume={18},
  number={1},
  pages={3--9},
  year={2012},
  publisher={Korean Society of Medical Informatics}
}
@inproceedings{shetty2023medical,
  title={Medical Image Retrieval System for Endoscopy Images Using CNN},
  author={Shetty, Rani and Bhat, Vandana S and Handigol, Shreya and Kumar, Sunny and Kubasad, Shambhavi and Badiger, Kartik},
  booktitle={2023 International Conference on Applied Intelligence and Sustainable Computing (ICAISC)},
  pages={1--5},
  year={2023},
  organization={IEEE}
}
@article{ozturk2023content,
  title={Content-based medical image retrieval with opponent class adaptive margin loss},
  author={{\"O}zt{\"u}rk, {\c{S}}aban and {\c{C}}elik, Emin and {\c{C}}ukur, Tolga},
  journal={Information Sciences},
  volume={637},
  pages={118938},
  year={2023},
  publisher={Elsevier}
}
@article{ahmed2023content,
  title={A Content-Based Medical Image Retrieval Method Using Relative Difference-Based Similarity Measure.},
  author={Ahmed, Ali and Almagrabi, Alaa Omran and Barukab, Omar M},
  journal={Intelligent Automation \& Soft Computing},
  volume={37},
  number={2},
  year={2023}
}
@article{agrawal2022content,
  title={Content-based medical image retrieval system for lung diseases using deep CNNs},
  author={Agrawal, Shubham and Chowdhary, Aastha and Agarwala, Saurabh and Mayya, Veena and Kamath S, Sowmya},
  journal={International Journal of Information Technology},
  volume={14},
  number={7},
  pages={3619--3627},
  year={2022},
  publisher={Springer}
}
@article{gupta2023medical,
  title={Medical image retrieval via nearest neighbor search on pre-trained image features},
  author={Gupta, Deepak and Loane, Russell and Gayen, Soumya and Demner-Fushman, Dina},
  journal={Knowledge-Based Systems},
  volume={278},
  pages={110907},
  year={2023},
  publisher={Elsevier}
}
@inproceedings{yuan2021explaining,
  title={Explaining information flow inside vision transformers using markov chain},
  author={Yuan, Tingyi and Li, Xuhong and Xiong, Haoyi and Cao, Hui and Dou, Dejing},
  booktitle={eXplainable AI approaches for debugging and diagnosis.},
  year={2021}
}
@article{sablayrolles2018spreading,
  title={Spreading vectors for similarity search},
  author={Sablayrolles, Alexandre and Douze, Matthijs and Schmid, Cordelia and J{\'e}gou, Herv{\'e}},
  journal={arXiv preprint arXiv:1806.03198},
  year={2018}
}

@article{Sablayrolles2018SpreadingVF,
  title={Spreading vectors for similarity search},
  author={Alexandre Sablayrolles and Matthijs Douze and Cordelia Schmid and Herv{\'e} J{\'e}gou},
  journal={arXiv: Machine Learning},
  year={2018},
  url={https://api.semanticscholar.org/CorpusID:62841605}
}

@article{kozachenko1987sample,
  title={Sample estimate of the entropy of a random vector},
  author={Kozachenko, Lyudmyla F and Leonenko, Nikolai N},
  journal={Problemy Peredachi Informatsii},
  volume={23},
  number={2},
  pages={9--16},
  year={1987},
  publisher={Russian Academy of Sciences, Branch of Informatics, Computer Equipment and~…}
}

@inproceedings{Xie2022ViTCXCE,
  title={ViT-CX: Causal Explanation of Vision Transformers},
  author={Weiyan Xie and Xiao-hui Li and Caleb Chen Cao and Nevin L.Zhang},
  booktitle={International Joint Conference on Artificial Intelligence},
  year={2022},
  url={https://api.semanticscholar.org/CorpusID:253383736}
}

@article{chen2022beyond,
  title={Beyond Intuition: Rethinking Token Attributions inside Transformers},
  author={Chen, Jiamin and Li, Xuhong and Yu, Lei and Dou, Dejing and Xiong, Haoyi},
  journal={Transactions on Machine Learning Research},
  year={2022}
}
@inproceedings{chefer2021transformer,
  title={Transformer interpretability beyond attention visualization},
  author={Chefer, Hila and Gur, Shir and Wolf, Lior},
  booktitle={Proceedings of the IEEE/CVF conference on computer vision and pattern recognition},
  pages={782--791},
  year={2021}
}
@inproceedings{chefer2021generic,
  title={Generic attention-model explainability for interpreting bi-modal and encoder-decoder transformers},
  author={Chefer, Hila and Gur, Shir and Wolf, Lior},
  booktitle={Proceedings of the IEEE/CVF International Conference on Computer Vision},
  pages={397--406},
  year={2021}
}
@article{petsiuk2018rise,
  title={Rise: Randomized input sampling for explanation of black-box models},
  author={Petsiuk, Vitali and Das, Abir and Saenko, Kate},
  journal={arXiv preprint arXiv:1806.07421},
  year={2018}
}
@article{stassin2023explainability,
  title={Explainability and Evaluation of Vision Transformers: An In-Depth Experimental Study},
  author={Stassin, S{\'e}drick and Corduant, Valentin and Mahmoudi, Sidi Ahmed and Siebert, Xavier},
  journal={Electronics},
  volume={13},
  number={1},
  pages={175},
  year={2023},
  publisher={MDPI}
}
@inproceedings{Jain2019AttentionIN,
  title={Attention is not Explanation},
  author={Sarthak Jain and Byron C. Wallace},
  booktitle={North American Chapter of the Association for Computational Linguistics},
  year={2019},
  url={https://api.semanticscholar.org/CorpusID:67855860}
}
@inproceedings{Serrano2019IsAI,
  title={Is Attention Interpretable?},
  author={Sofia Serrano and Noah A. Smith},
  booktitle={Annual Meeting of the Association for Computational Linguistics},
  year={2019},
  url={https://api.semanticscholar.org/CorpusID:182953113}
}
@article{thakrar2023semantic,
  title={Semantic Retrieval of Similar Radiological Images using Vision Transformers},
  author={Thakrar, Anjali and Jayasuriya, Michael and Serapio, Adrian and Wu, Xiao and Davis, Eric and Schroeder, Jamie and Vella, Maya and Sohn, Jae Ho},
  journal={medRxiv},
  pages={2023--02},
  year={2023},
  publisher={Cold Spring Harbor Laboratory Press}
}

@inproceedings{trinh2021endoscopy,
  title={Endoscopy Image Retrieval by Mixer Multi-Layer Perceptron.},
  author={Trinh, Quoc-Huy and Nguyen, Minh-Van},
  booktitle={FedCSIS (Position Papers)},
  pages={223--226},
  year={2021}
}
@article{el2021training,
  title={Training vision transformers for image retrieval},
  author={El-Nouby, Alaaeldin and Neverova, Natalia and Laptev, Ivan and J{\'e}gou, Herv{\'e}},
  journal={arXiv preprint arXiv:2102.05644},
  year={2021}
}
@inproceedings{englebert2023explaining,
  title={Explaining through Transformer Input Sampling},
  author={Englebert, Alexandre and Stassin, S{\'e}drick and Nanfack, G{\'e}raldin and Mahmoudi, Sidi Ahmed and Siebert, Xavier and Cornu, Olivier and De Vleeschouwer, Christophe},
  booktitle={Proceedings of the IEEE/CVF International Conference on Computer Vision},
  pages={806--815},
  year={2023}
}
@inproceedings{pogorelov2017kvasir,
  title={Kvasir: A multi-class image dataset for computer aided gastrointestinal disease detection},
  author={Pogorelov, Konstantin and Randel, Kristin Ranheim and Griwodz, Carsten and Eskeland, Sigrun Losada and de Lange, Thomas and Johansen, Dag and Spampinato, Concetto and Dang-Nguyen, Duc-Tien and Lux, Mathias and Schmidt, Peter Thelin and others},
  booktitle={Proceedings of the 8th ACM on Multimedia Systems Conference},
  pages={164--169},
  year={2017}
}
@inproceedings{codella2018skin,
  title={Skin lesion analysis toward melanoma detection: A challenge at the 2017 international symposium on biomedical imaging (isbi), hosted by the international skin imaging collaboration (isic)},
  author={Codella, Noel CF and Gutman, David and Celebi, M Emre and Helba, Brian and Marchetti, Michael A and Dusza, Stephen W and Kalloo, Aadi and Liopyris, Konstantinos and Mishra, Nabin and Kittler, Harald and others},
  booktitle={2018 IEEE 15th international symposium on biomedical imaging (ISBI 2018)},
  pages={168--172},
  year={2018},
  organization={IEEE}
}
@inproceedings{touvron2021training,
  title={Training data-efficient image transformers \& distillation through attention},
  author={Touvron, Hugo and Cord, Matthieu and Douze, Matthijs and Massa, Francisco and Sablayrolles, Alexandre and J{\'e}gou, Herv{\'e}},
  booktitle={International conference on machine learning},
  pages={10347--10357},
  year={2021},
  organization={PMLR}
}
@inproceedings{wang2020understanding,
  title={Understanding contrastive representation learning through alignment and uniformity on the hypersphere},
  author={Wang, Tongzhou and Isola, Phillip},
  booktitle={International Conference on Machine Learning},
  pages={9929--9939},
  year={2020},
  organization={PMLR}
}
@inproceedings{musgrave2020metric,
  title={A metric learning reality check},
  author={Musgrave, Kevin and Belongie, Serge and Lim, Ser-Nam},
  booktitle={Computer Vision--ECCV 2020: 16th European Conference, Glasgow, UK, August 23--28, 2020, Proceedings, Part XXV 16},
  pages={681--699},
  year={2020},
  organization={Springer}
}
@inproceedings{hadsell2006dimensionality,
  title={Dimensionality reduction by learning an invariant mapping},
  author={Hadsell, Raia and Chopra, Sumit and LeCun, Yann},
  booktitle={2006 IEEE computer society conference on computer vision and pattern recognition (CVPR'06)},
  volume={2},
  pages={1735--1742},
  year={2006},
  organization={IEEE}
}
@article{sait2020curated,
  title={Curated dataset for COVID-19 posterior-anterior chest radiography images (X-Rays)},
  author={Sait, Unais and Lal, KG and Prajapati, S and Bhaumik, Rahul and Kumar, Tarun and Sanjana, S and Bhalla, Kriti},
  journal={Mendeley Data},
  volume={1},
  year={2020}
}

@misc{rashad2022effective,
  title={Effective of modern techniques on content-based medical image retrieval: a survey},
  author={Rashad, Metwally and Nooh, Sameer and Afifi, Ibrahem and Abdelfatah, Mohamed},
  year={2022}
}
@article{abnar2020quantifying,
  title={Quantifying attention flow in transformers},
  author={Abnar, Samira and Zuidema, Willem},
  journal={arXiv preprint arXiv:2005.00928},
  year={2020}
}
@inproceedings{Abnar2020QuantifyingAF,
  title={Quantifying Attention Flow in Transformers},
  author={Samira Abnar and Willem Zuidema},
  booktitle={Annual Meeting of the Association for Computational Linguistics},
  year={2020},
  url={https://api.semanticscholar.org/CorpusID:218487351}
}