#!/bin/bash

FASTA_PATH=/mnt/nfs_protein/shadskiy/GENA/biodata


python3 /mnt/10tb/home/shadskiy/many_genomes_mane_nt_tib/make_dataset_human.py
    --output=/mnt/10tb/home/shadskiy/many_genomes_mane_nt_tib/more_intergenic_shaurma_no_lncRNA_junction_train.hdf5 \
    --gff=$FASTA_PATH/genomic.gff \
    --fasta=$FASTA_PATH/GCF_009914755.1_T2T-CHM13v2.0_genomic.fna \
    --fai=$FASTA_PATH/GCF_009914755.1_T2T-CHM13v2.0_genomic.fna.fai \
    --mane=$FASTA_PATH/MANE.GRCh38.v1.3.ensembl_genomic.gff \
    --chrs=$FASTA_PATH/learning_chrs.txt --index=/mnt/10tb/home/shadskiy/many_genomes_mane_nt_tib/actual_index.txt 
