#!/bin/bash

WORK_DIR=/mnt/10tb/home/shadskiy/augustus
INPUT_DIR=$WORK_DIR/biodata

NAME=Hs_NC_060944.1_gene
SPECIES=human

CUDA_VISIBLE_DEVICES=0 /mnt/10tb/home/shadskiy/augustus/Augustus/src/augustus --strand=both --introns=on \
          --cds=on --gff3=on --species=$SPECIES --UTR=on \
          --species=SPECIES $INPUT_DIR/$NAME.fa > $WORK_DIR/augustus_$NAME.gff