#!/bin/bash

WORK_DIR=/mnt/10tb/home/shadskiy/nt_pred
INPUT_DIR=/mnt/10tb/home/shadskiy/nt_pred/segment_borzoi
OUTPUT_DIR=/mnt/10tb/home/shadskiy/nt_pred
DATA_DIR=/mnt/10tb/home/shadskiy/ncbi_dataset/data/GCF_009914755.1

DIRECTION=forward
CHROM=NC_060944.1

FILE_NAME=segment_borzoi
#segment_borzoi
#segment_nt-Hs-NC_060944.1
#python3 $WORK_DIR/busco_letter.py \
#      --input=$INPUT_DIR/$FILE_NAME.hdf5 \
#      --transcripts_list=$DATA_DIR/mane_transcript_names.txt \
#      --direction=$DIRECTION \
#      --output=$OUTPUT_DIR \
#      --h5=$FILE_NAME


python3 $WORK_DIR/exon_level_letter.py \
      --input=$INPUT_DIR/$FILE_NAME.hdf5 \
      --output=$OUTPUT_DIR/${FILE_NAME}_pr_auc.txt

#python3 $WORK_DIR/gene_level_letter.py  \
#      --input=$INPUT_DIR/$FILE_NAME.hdf5 \
#      --gff=/mnt/10tb/home/shadskiy/ncbi_dataset/data/GCF_009914755.1/genomic.gff  \
#      --chrs=$CHROM \
#      --direction=$DIRECTION \
#      --output=$OUTPUT_DIR/${FILE_NAME}_gene-level_letter_${DIRECTION}


FILE_NAME=segment_enformer
#segment_enformer

#segment_nt_multi_species-Hs-NC_060944.1
#python3 $WORK_DIR/busco_letter.py \
#      --input=$INPUT_DIR/$FILE_NAME.hdf5 \
#      --transcripts_list=$DATA_DIR/mane_transcript_names.txt \
#      --direction=$DIRECTION \
#      --output=$OUTPUT_DIR \
#      --h5=$FILE_NAME


python3 $WORK_DIR/exon_level_letter.py \
      --input=$INPUT_DIR/$FILE_NAME.hdf5 \
      --output=$OUTPUT_DIR/${FILE_NAME}_pr_auc.txt

#python3 $WORK_DIR/gene_level_letter.py  \
#      --input=$INPUT_DIR/$FILE_NAME.hdf5 \
#      --gff=/mnt/10tb/home/shadskiy/ncbi_dataset/data/GCF_009914755.1/genomic.gff  \
#      --chrs=$CHROM \
#      --direction=$DIRECTION \
#      --output=$OUTPUT_DIR/${FILE_NAME}_gene-level_letter_${DIRECTION}




 