@book{Lamport:Book:1989,
 author = {Lamport, Leslie},
 title = {Latex: A Document Preparation System},
 year = {1986},
 isbn = {0-201-15790-X},
 publisher = {Addison-Wesley Longman Publishing Co., Inc.},
 address = {Boston, MA, USA},
}

@misc{Hinton:arXiv:2015:Distilling,
 title={Distilling the knowledge in a neural network},
 author={Hinton, Geoffrey and Vinyals, Oriol and Dean, Jeff},
 OPTeprinttype={arXiv},
 OPTeprint={1503.02531},
 howpublished={Eprint \href{http://arxiv.org/abs/1503.02531}{arXiv:1503.02531}},
 OPTurl={http://arxiv.org/abs/1503.02531},
 year=2015
}

@inproceedings{ronneberger2015unet,
  author    = {Ronneberger, Olaf and Fischer, Philipp and Brox, Thomas},
  title     = {U-Net: Convolutional Networks for Biomedical Image Segmentation},
  booktitle = {Medical Image Computing and Computer-Assisted Intervention (MICCAI)},
  year      = {2015}
}

@inproceedings{zhou2018unetpp,
  author    = {Zhou, Zongwei and Siddiquee, Md Mahfuzur Rahman and Tajbakhsh, Nima and Liang, Jianming},
  title     = {{UNet++}: A Nested {U-Net} Architecture for Medical Image Segmentation},
  booktitle = {Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support},
  year      = {2018}
}

@inproceedings{szegedy2015goingdeeper,
  author    = {Szegedy, Christian and Liu, Wei and Jia, Yangqing and Sermanet, Pierre and Reed, Scott and Anguelov, Dragomir and Erhan, Dumitru and Vanhoucke, Vincent and Rabinovich, Andrew},
  title     = {Going Deeper with Convolutions},
  booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR)},
  year      = {2015}
}

@inproceedings{he2016resnet,
  author    = {He, Kaiming and Zhang, Xiangyu and Ren, Shaoqing and Sun, Jian},
  title     = {Deep Residual Learning for Image Recognition},
  booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR)},
  year      = {2016}
}

@article{otsu1979threshold,
  author  = {Otsu, Nobuyuki},
  title   = {A Threshold Selection Method from Gray-Level Histograms},
  journal = {IEEE Transactions on Systems, Man, and Cybernetics},
  volume  = {9},
  number  = {1},
  pages   = {62--66},
  year    = {1979}
}

@inproceedings{long2015fcn,
  author    = {Long, Jonathan and Shelhamer, Evan and Darrell, Trevor},
  title     = {Fully Convolutional Networks for Semantic Segmentation},
  booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR)},
  year      = {2015}
}

@inproceedings{paszke2019pytorch,
  author    = {Paszke, Adam and Gross, Sam and Massa, Francisco and Lerer, Adam and Bradbury, James and Chanan, Gregory and Killeen, Trevor and Lin, Zeming and Gimelshein, Natalia and Antiga, Luca and Desmaison, Alban and Kopf, Andreas and Yang, Edward and DeVito, Zachary and Raison, Martin and Tejani, Alykhan and Chilamkurthy, Sasank and Steiner, Benoit and Fang, Lu and Bai, Junjie and Chintala, Soumith},
  title     = {{PyTorch}: An Imperative Style, High-Performance Deep Learning Library},
  booktitle = {Advances in Neural Information Processing Systems (NeurIPS)},
  year      = {2019}
}

% Skeletonization reference – bitte durch konkrete Methode ersetzen
@article{skeletonizationRef,
  author  = {Author, First and Author, Second},
  title   = {Title of the Skeletonization Method},
  journal = {Journal Name},
  year    = {Year},
  note    = {Replace with the specific skeletonization method used}
}

@inproceedings{akiba2019optuna,
  author    = {Akiba, Takuya and Sano, Shotaro and Yanase, Toshihiko and Ohta, Takeru and Koyama, Masanori},
  title     = {Optuna: A Next-generation Hyperparameter Optimization Framework},
  booktitle = {Proceedings of the 25th {ACM} {SIGKDD} International Conference on Knowledge Discovery and Data Mining},
  year      = {2019}
}

@article{kurzbach2025patternoid,
  author  = {Kurzbach, S. et al.},
  title   = {Patternoid: A High-throughput Platform for Standardized {3D} Organoid Culture and Longitudinal Imaging},
  journal = {Lab on a Chip},
  year    = {2025}
}

@article{randriamanantsoa2022pdacOrganoids,
  author  = {Randriamanantsoa, Samuel et al.},
  title   = {A Novel Pancreatic Ductal Adenocarcinoma Organoid Model Reveals Interpatient Morphological and Transcriptional Heterogeneity},
  journal = {Nature Communications},
  year    = {2022}
}

@article{clevers2016organoids,
  author  = {Clevers, Hans},
  title   = {Modeling Development and Disease with Organoids},
  journal = {Cell},
  volume  = {165},
  pages   = {1586--1597},
  year    = {2016}
}

@article{boj2015pdacOrganoids,
  author  = {Boj, Sylvia F. et al.},
  title   = {Organoid Models of Human and Mouse Ductal Pancreatic Cancer},
  journal = {Cell},
  volume  = {160},
  pages   = {324--338},
  year    = {2015}
}
