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AUTHORS.md
LICENSE.txt
README.md
fig1.png
pyproject.toml
setup.cfg
setup.py
tox.ini
.github/workflows/ci.yml
docs/Makefile
docs/authors.md
docs/conf.py
docs/index.md
docs/license.md
docs/readme.md
docs/requirements.txt
docs/_static/.gitignore
gpu_tests/test_lightning.py
src/callbacks/gpu_affinity.py
src/callbacks/norms.py
src/callbacks/params.py
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src/callbacks/timer.py
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src/dataloaders/__init__.py
src/dataloaders/base.py
src/dataloaders/et.py
src/dataloaders/fault_tolerant_sampler.py
src/dataloaders/genomics.py
src/dataloaders/datasets/chromatin_profile_dataset.py
src/dataloaders/datasets/genomic_bench_dataset.py
src/dataloaders/datasets/hg38_char_tokenizer.py
src/dataloaders/datasets/hg38_dataset.py
src/dataloaders/datasets/hg38_fixed_dataset.py
src/dataloaders/datasets/hg38_icl_dataset.py
src/dataloaders/datasets/icl_genomics_dataset.py
src/dataloaders/datasets/lm_dataset.py
src/dataloaders/datasets/nucleotide_transformer_dataset.py
src/dataloaders/datasets/species_dataset.py
src/dataloaders/utils/vocabulary.py
src/models/nn/__init__.py
src/models/nn/adaptive_softmax.py
src/models/nn/components.py
src/models/nn/dxt.py
src/models/nn/gate.py
src/models/nn/residual.py
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src/models/sequence/__init__.py
src/models/sequence/base.py
src/models/sequence/block.py
src/models/sequence/block_fft.py
src/models/sequence/dna_embedding.py
src/models/sequence/ff.py
src/models/sequence/hyena.py
src/models/sequence/long_conv.py
src/models/sequence/long_conv_kernel.py
src/models/sequence/long_conv_lm.py
src/models/sequence/mha.py
src/models/sequence/model.py
src/models/sequence/pool.py
src/models/sequence/simple_lm.py
src/ops/fftconv.py
src/ops/krylov.py
src/ops/toeplitz.py
src/ops/unroll.py
src/ops/vandermonde.py
src/regLM.egg-info/PKG-INFO
src/regLM.egg-info/SOURCES.txt
src/regLM.egg-info/dependency_links.txt
src/regLM.egg-info/not-zip-safe
src/regLM.egg-info/requires.txt
src/regLM.egg-info/top_level.txt
src/reglm/__init__.py
src/reglm/dataset.py
src/reglm/evolve.py
src/reglm/interpret.py
src/reglm/lightning.py
src/reglm/metrics.py
src/reglm/regression.py
src/reglm/utils.py
src/tasks/decoders.py
src/tasks/encoders.py
src/tasks/metrics.py
src/tasks/tasks.py
src/tasks/torchmetrics.py
src/utils/__init__.py
src/utils/config.py
src/utils/distributed.py
src/utils/optim_groups.py
src/utils/permutations.py
src/utils/profiling.py
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src/utils/train.py
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tests/conftest.py
tests/test_dataset.py
tests/test_interpret.py
tests/test_metrics.py
tests/test_utils.py
tutorials/tutorial.ipynb