@book{Lamport:Book:1989,
 author = {Lamport, Leslie},
 title = {Latex: A Document Preparation System},
 year = {1986},
 isbn = {0-201-15790-X},
 publisher = {Addison-Wesley Longman Publishing Co., Inc.},
 address = {Boston, MA, USA},
}

@misc{Hinton:arXiv:2015:Distilling,
 title={Distilling the knowledge in a neural network},
 author={Hinton, Geoffrey and Vinyals, Oriol and Dean, Jeff},
 OPTeprinttype={arXiv},
 OPTeprint={1503.02531},
 howpublished={Eprint \href{http://arxiv.org/abs/1503.02531}{arXiv:1503.02531}},
 OPTurl={http://arxiv.org/abs/1503.02531},
 year=2015
}

@inproceedings{mok2022unsupervised,
  title={Unsupervised deformable image registration with absent correspondences in pre-operative and post-recurrence brain tumor MRI scans},
  author={Mok, Tony CW and Chung, Albert CS},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={25--35},
  year={2022},
  organization={Springer}
}

@article{Ref1,
  title={Deformable medical image registration: A survey},
  author={Sotiras, Aristeidis and Davatzikos, Christos and Paragios, Nikos},
  journal={IEEE transactions on medical imaging},
  volume={32},
  number={7},
  pages={1153--1190},
  year={2013},
  publisher={IEEE}
}

@article{Ref2,
  title={Medical image registration: a review},
  author={Oliveira, Francisco PM and Tavares, Joao Manuel RS},
  journal={Computer methods in biomechanics and biomedical engineering},
  volume={17},
  number={2},
  pages={73--93},
  year={2014},
  publisher={Taylor \& Francis}
}

@article{ref3,
  title={HAMMER: hierarchical attribute matching mechanism for elastic registration},
  author={Shen, Dinggang and Davatzikos, Christos},
  journal={IEEE transactions on medical imaging},
  volume={21},
  number={11},
  pages={1421--1439},
  year={2002},
  publisher={IEEE}
}

@article{ref4,
  title={A robust and interpretable deep learning framework for multi-modal registration via keypoints},
  author={Wang, Alan Q and Evan, M Yu and Dalca, Adrian V and Sabuncu, Mert R},
  journal={Medical Image Analysis},
  volume={90},
  pages={102962},
  year={2023},
  publisher={Elsevier}
}

@inproceedings{ref5,
  title={Medical image registration method based on simulated CT},
  author={Wang, Xuqing and Su, Yanan and Liu, Ruoyu and Qu, Qianhui and Liu, Hao and Gu, Yi},
  booktitle={International Conference on Intelligent Computing},
  pages={719--728},
  year={2022},
  organization={Springer}
}

@inproceedings{ref6,
  title={Xmorpher: Full transformer for deformable medical image registration via cross attention},
  author={Shi, Jiacheng and He, Yuting and Kong, Youyong and Coatrieux, Jean-Louis and Shu, Huazhong and Yang, Guanyu and Li, Shuo},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={217--226},
  year={2022},
  organization={Springer}
}

@inproceedings{ref7,
  title={IC-CViT: Inverse-Consistent Convolutional Vision Transformer for Diffeomorphic Image Registration},
  author={Xu, Tao and Jiang, Ting and Li, Xiaoning},
  booktitle={2023 International Joint Conference on Neural Networks (IJCNN)},
  pages={1--10},
  year={2023},
  organization={IEEE}
}

@article{ref8,
  title={Transmatch: A transformer-based multilevel dual-stream feature matching network for unsupervised deformable image registration},
  author={Chen, Zeyuan and Zheng, Yuanjie and Gee, James C},
  journal={IEEE transactions on medical imaging},
  volume={43},
  number={1},
  pages={15--27},
  year={2023},
  publisher={IEEE}
}

@inproceedings{ref13,
  title={unigradicon: A foundation model for medical image registration},
  author={Tian, Lin and Greer, Hastings and Kwitt, Roland and Vialard, Fran{\c{c}}ois-Xavier and San Jos{\'e} Est{\'e}par, Ra{\'u}l and Bouix, Sylvain and Rushmore, Richard and Niethammer, Marc},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={749--760},
  year={2024},
  organization={Springer}
}

@inproceedings{ref9,
  title={Unsupervised deformable image registration with absent correspondences in pre-operative and post-recurrence brain tumor MRI scans},
  author={Mok, Tony CW and Chung, Albert CS},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={25--35},
  year={2022},
  organization={Springer}
}

@article{ref11,
  title={Voxelmorph: a learning framework for deformable medical image registration},
  author={Balakrishnan, Guha and Zhao, Amy and Sabuncu, Mert R and Guttag, John and Dalca, Adrian V},
  journal={IEEE transactions on medical imaging},
  volume={38},
  number={8},
  pages={1788--1800},
  year={2019},
  publisher={IEEE}
}

@article{ref10,
  title={SymReg-GAN: symmetric image registration with generative adversarial networks},
  author={Zheng, Yuanjie and Sui, Xiaodan and Jiang, Yanyun and Che, Tongtong and Zhang, Shaoting and Yang, Jie and Li, Hongsheng},
  journal={IEEE transactions on pattern analysis and machine intelligence},
  volume={44},
  number={9},
  pages={5631--5646},
  year={2021},
  publisher={IEEE}
}

@inproceedings{ref12,
  title={Icon: Learning regular maps through inverse consistency},
  author={Greer, Hastings and Kwitt, Roland and Vialard, Fran{\c{c}}ois-Xavier and Niethammer, Marc},
  booktitle={Proceedings of the IEEE/CVF International Conference on Computer Vision},
  pages={3396--3405},
  year={2021}
}

@inproceedings{ref13,
  title={GradICON: Approximate diffeomorphisms via gradient inverse consistency},
  author={Tian, Lin and Greer, Hastings and Vialard, Fran{\c{c}}ois-Xavier and Kwitt, Roland and Est{\'e}par, Ra{\'u}l San Jos{\'e} and Rushmore, Richard Jarrett and Makris, Nikolaos and Bouix, Sylvain and Niethammer, Marc},
  booktitle={Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition},
  pages={18084--18094},
  year={2023}
}

@inproceedings{ref14,
  title={Nephi: Neural deformation fields for approximately diffeomorphic medical image registration},
  author={Tian, Lin and Greer, Hastings and Jos{\'e} Est{\'e}par, Ra{\'u}l San and Sengupta, Roni and Niethammer, Marc},
  booktitle={European Conference on Computer Vision},
  pages={213--237},
  year={2025},
  organization={Springer}
}

@article{attenUnet,
  title={Attention u-net: Learning where to look for the pancreas},
  author={Oktay, Ozan and Schlemper, Jo and Folgoc, Loic Le and Lee, Matthew and Heinrich, Mattias and Misawa, Kazunari and Mori, Kensaku and McDonagh, Steven and Hammerla, Nils Y and Kainz, Bernhard and others},
  journal={arXiv preprint arXiv:1804.03999},
  year={2018}
}

@article{ref15,
  title={Medical image segmentation review: The success of u-net},
  author={Azad, Reza and Aghdam, Ehsan Khodapanah and Rauland, Amelie and Jia, Yiwei and Avval, Atlas Haddadi and Bozorgpour, Afshin and Karimijafarbigloo, Sanaz and Cohen, Joseph Paul and Adeli, Ehsan and Merhof, Dorit},
  journal={IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year={2024},
  publisher={IEEE}
}

@article{ref16,
  title={Attention mechanisms in computer vision: A survey},
  author={Guo, Meng-Hao and Xu, Tian-Xing and Liu, Jiang-Jiang and Liu, Zheng-Ning and Jiang, Peng-Tao and Mu, Tai-Jiang and Zhang, Song-Hai and Martin, Ralph R and Cheng, Ming-Ming and Hu, Shi-Min},
  journal={Computational visual media},
  volume={8},
  number={3},
  pages={331--368},
  year={2022},
  publisher={Springer}
}

@article{ref17,
  title={A general survey on attention mechanisms in deep learning},
  author={Brauwers, Gianni and Frasincar, Flavius},
  journal={IEEE Transactions on Knowledge and Data Engineering},
  volume={35},
  number={4},
  pages={3279--3298},
  year={2021},
  publisher={IEEE}
}

@article{diffemorphic,
  title={Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain},
  author={Avants, Brian B and Epstein, Charles L and Grossman, Murray and Gee, James C},
  journal={Medical image analysis},
  volume={12},
  number={1},
  pages={26--41},
  year={2008},
  publisher={Elsevier}
}


@article{icnet,
  title={Inverse-consistent deep networks for unsupervised deformable image registration},
  author={Zhang, Jun},
  journal={arXiv preprint arXiv:1809.03443},
  year={2018}
}

@inproceedings{lapirn,
  title={Large deformation diffeomorphic image registration with laplacian pyramid networks},
  author={Mok, Tony CW and Chung, Albert CS},
  booktitle={Medical Image Computing and Computer Assisted Intervention--MICCAI 2020: 23rd International Conference, Lima, Peru, October 4--8, 2020, Proceedings, Part III 23},
  pages={211--221},
  year={2020},
  organization={Springer}
}

@article{ants,
  title={Advanced normalization tools (ANTS)},
  author={Avants, Brian B and Tustison, Nick and Song, Gang and others},
  journal={Insight j},
  volume={2},
  number={365},
  pages={1--35},
  year={2009}
}

@article{freesurfer,
  title={FreeSurfer},
  author={Fischl, Bruce},
  journal={Neuroimage},
  volume={62},
  number={2},
  pages={774--781},
  year={2012},
  publisher={Elsevier}
}


@inproceedings{hering2019mlvirnet,
  title={mlvirnet: Multilevel variational image registration network},
  author={Hering, Alessa and Van Ginneken, Bram and Heldmann, Stefan},
  booktitle={Medical Image Computing and Computer Assisted Intervention--MICCAI 2019: 22nd International Conference, Shenzhen, China, October 13--17, 2019, Proceedings, Part VI 22},
  pages={257--265},
  year={2019},
  organization={Springer}
}

@article{eppenhof2019progressively,
  title={Progressively trained convolutional neural networks for deformable image registration},
  author={Eppenhof, Koen AJ and Lafarge, Maxime W and Veta, Mitko and Pluim, Josien PW},
  journal={IEEE transactions on medical imaging},
  volume={39},
  number={5},
  pages={1594--1604},
  year={2019},
  publisher={IEEE}
}

@article{che2023amnet,
  title={AMNet: Adaptive multi-level network for deformable registration of 3D brain MR images},
  author={Che, Tongtong and Wang, Xiuying and Zhao, Kun and Zhao, Yan and Zeng, Debin and Li, Qiongling and Zheng, Yuanjie and Yang, Ning and Wang, Jian and Li, Shuyu},
  journal={Medical Image Analysis},
  volume={85},
  pages={102740},
  year={2023},
  publisher={Elsevier}
}

@article{walve,
  title={3D discrete wavelet transform-based feature extraction for hyperspectral face recognition},
  author={Ghasemzadeh, Aman and Demirel, Hasan},
  journal={Iet Biometrics},
  volume={7},
  number={1},
  pages={49--55},
  year={2018},
  publisher={Wiley Online Library}
}

@inproceedings{ref17,
  title={Deformable image registration based on similarity-steered CNN regression},
  author={Cao, Xiaohuan and Yang, Jianhua and Zhang, Jun and Nie, Dong and Kim, Minjeong and Wang, Qian and Shen, Dinggang},
  booktitle={Medical Image Computing and Computer Assisted Intervention- MICCAI 2017: 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part I 20},
  pages={300--308},
  year={2017},
  organization={Springer}
}

@article{ref18,
  title={Deformable image registration using a cue-aware deep regression network},
  author={Cao, Xiaohuan and Yang, Jianhua and Zhang, Jun and Wang, Qian and Yap, Pew-Thian and Shen, Dinggang},
  journal={IEEE Transactions on Biomedical Engineering},
  volume={65},
  number={9},
  pages={1900--1911},
  year={2018},
  publisher={IEEE}
}

@article{ref19,
  title={Quicksilver: Fast predictive image registration--a deep learning approach},
  author={Yang, Xiao and Kwitt, Roland and Styner, Martin and Niethammer, Marc},
  journal={NeuroImage},
  volume={158},
  pages={378--396},
  year={2017},
  publisher={Elsevier}
}

@article{ref20,
  title={CycleMorph: cycle consistent unsupervised deformable image registration},
  author={Kim, Boah and Kim, Dong Hwan and Park, Seong Ho and Kim, Jieun and Lee, June-Goo and Ye, Jong Chul},
  journal={Medical image analysis},
  volume={71},
  pages={102036},
  year={2021},
  publisher={Elsevier}
}


@article{ref21,
  title={Transmorph: Transformer for unsupervised medical image registration},
  author={Chen, Junyu and Frey, Eric C and He, Yufan and Segars, William P and Li, Ye and Du, Yong},
  journal={Medical image analysis},
  volume={82},
  pages={102615},
  year={2022},
  publisher={Elsevier}
}

@article{ref22,
  title={SuperFusion: A versatile image registration and fusion network with semantic awareness},
  author={Tang, Linfeng and Deng, Yuxin and Ma, Yong and Huang, Jun and Ma, Jiayi},
  journal={IEEE/CAA Journal of Automatica Sinica},
  volume={9},
  number={12},
  pages={2121--2137},
  year={2022},
  publisher={IEEE}
}


@article{ref23,
  title={Deep learning attention mechanism in medical image analysis: Basics and beyonds},
  author={Li, Xiang and Li, Minglei and Yan, Pengfei and Li, Guanyi and Jiang, Yuchen and Luo, Hao and Yin, Shen},
  journal={International Journal of Network Dynamics and Intelligence},
  pages={93--116},
  year={2023}
}

@article{ref24,
  title={Brain tumor segmentation based on deep learning and an attention mechanism using MRI multi-modalities brain images},
  author={Ranjbarzadeh, Ramin and Bagherian Kasgari, Abbas and Jafarzadeh Ghoushchi, Saeid and Anari, Shokofeh and Naseri, Maryam and Bendechache, Malika},
  journal={Scientific Reports},
  volume={11},
  number={1},
  pages={1--17},
  year={2021},
  publisher={Nature Publishing Group}
}


@inproceedings{large1,
  title={Correlation-aware coarse-to-fine mlps for deformable medical image registration},
  author={Meng, Mingyuan and Feng, Dagan and Bi, Lei and Kim, Jinman},
  booktitle={Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition},
  pages={9645--9654},
  year={2024}
}

@article{large2,
  title={Recursive deformable pyramid network for unsupervised medical image registration},
  author={Wang, Haiqiao and Ni, Dong and Wang, Yi},
  journal={IEEE Transactions on Medical Imaging},
  volume={43},
  number={6},
  pages={2229--2240},
  year={2024},
  publisher={IEEE}
}

@inproceedings{large3,
  title={Affine medical image registration with coarse-to-fine vision transformer},
  author={Mok, Tony CW and Chung, Albert},
  booktitle={Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition},
  pages={20835--20844},
  year={2022}
}

@inproceedings{gradicon,
  title={GradICON: Approximate diffeomorphisms via gradient inverse consistency},
  author={Tian, Lin and Greer, Hastings and Vialard, Fran{\c{c}}ois-Xavier and Kwitt, Roland and Est{\'e}par, Ra{\'u}l San Jos{\'e} and Rushmore, Richard Jarrett and Makris, Nikolaos and Bouix, Sylvain and Niethammer, Marc},
  booktitle={Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition},
  pages={18084--18094},
  year={2023}
}

@article{synthmorph,
  title={SynthMorph: learning contrast-invariant registration without acquired images},
  author={Hoffmann, Malte and Billot, Benjamin and Greve, Douglas N and Iglesias, Juan Eugenio and Fischl, Bruce and Dalca, Adrian V},
  journal={IEEE transactions on medical imaging},
  volume={41},
  number={3},
  pages={543--558},
  year={2021},
  publisher={IEEE}
}