@book{Lamport:Book:1989,
 author = {Lamport, Leslie},
 title = {Latex: A Document Preparation System},
 year = {1986},
 isbn = {0-201-15790-X},
 publisher = {Addison-Wesley Longman Publishing Co., Inc.},
 address = {Boston, MA, USA},
}

@misc{Hinton:arXiv:2015:Distilling,
 title={Distilling the knowledge in a neural network},
 author={Hinton, Geoffrey and Vinyals, Oriol and Dean, Jeff},
 OPTeprinttype={arXiv},
 OPTeprint={1503.02531},
 howpublished={Eprint \href{http://arxiv.org/abs/1503.02531}{arXiv:1503.02531}},
 OPTurl={http://arxiv.org/abs/1503.02531},
 year=2015
}
@article{sitzmann2020,
  title={Implicit neural representations with periodic activation functions},
  author={Sitzmann, Vincent and Martel, Julien and Bergman, Alexander and Lindell, David and Wetzstein, Gordon},
  journal={Advances in neural information processing systems},
  volume={33},
  pages={7462--7473},
  year={2020}
}
@inproceedings{wolterink2022,
  title={Implicit neural representations for deformable image registration},
  author={Wolterink, Jelmer M and Zwienenberg, Jesse C and Brune, Christoph},
  booktitle={International Conference on medical imaging with deep learning},
  pages={1349--1359},
  year={2022},
  organization={PMLR}
}

@article{dirlabCOPD,
  title={A reference dataset for deformable image registration spatial accuracy evaluation using the COPDgene study archive},
  author={Castillo, Richard and Castillo, Edward and Fuentes, David and Ahmad, Moiz and Wood, Abbie M and Ludwig, Michelle S and Guerrero, Thomas},
  journal={Physics in Medicine \& Biology},
  volume={58},
  number={9},
  pages={2861},
  year={2013},
  publisher={IOP Publishing}
}

@article{dirlab,
  title={A framework for evaluation of deformable image registration spatial accuracy using large landmark point sets},
  author={Castillo, Richard and Castillo, Edward and Guerra, Rudy and Johnson, Valen E and McPhail, Travis and Garg, Amit K and Guerrero, Thomas},
  journal={Physics in Medicine \& Biology},
  volume={54},
  number={7},
  pages={1849},
  year={2009},
  publisher={IOP Publishing}
}

@article{voxelmorph,
  title={Voxelmorph: a learning framework for deformable medical image registration},
  author={Balakrishnan, Guha and Zhao, Amy and Sabuncu, Mert R and Guttag, John and Dalca, Adrian V},
  journal={IEEE Transactions on Medical Imaging},
  volume={38},
  number={8},
  pages={1788--1800},
  year={2019},
  publisher={IEEE}
}
@article{hering2021,
  title={CNN-based lung CT registration with multiple anatomical constraints},
  author={Hering, Alessa and H{\"a}ger, Stephanie and Moltz, Jan and Lessmann, Nikolas and Heldmann, Stefan and Van Ginneken, Bram},
  journal={Medical Image Analysis},
  volume={72},
  pages={102139},
  year={2021},
  publisher={Elsevier}
}
@article{rueckert2002,
  title={Nonrigid registration using free-form deformations: application to breast MR images},
  author={Rueckert, Daniel and Sonoda, Luke I and Hayes, Carmel and Hill, Derek LG and Leach, Martin O and Hawkes, David J},
  journal={IEEE Transactions on Medical Imaging},
  volume={18},
  number={8},
  pages={712--721},
  year={2002},
  publisher={IEEE}
}
@article{werner2014,
  title={Estimation of lung motion fields in 4D CT data by variational non-linear intensity-based registration: A comparison and evaluation study},
  author={Werner, Ren{\'e} and Schmidt-Richberg, Alexander and Handels, Heinz and Ehrhardt, Jan},
  journal={Physics in Medicine \& Biology},
  volume={59},
  number={15},
  pages={4247},
  year={2014},
  publisher={IOP Publishing}
}
@article{sotiras2013,
  title={Deformable medical image registration: A survey},
  author={Sotiras, Aristeidis and Davatzikos, Christos and Paragios, Nikos},
  journal={IEEE Transactions on Medical Imaging},
  volume={32},
  number={7},
  pages={1153--1190},
  year={2013},
  publisher={IEEE}
}

@InProceedings{pmlr-v97-rahaman19a,
  title = 	 {On the Spectral Bias of Neural Networks},
  author =       {Rahaman, Nasim and Baratin, Aristide and Arpit, Devansh and Draxler, Felix and Lin, Min and Hamprecht, Fred and Bengio, Yoshua and Courville, Aaron},
  booktitle = 	 {Proceedings of the 36th International Conference on Machine Learning},
  pages = 	 {5301--5310},
  year = 	 {2019},
  editor = 	 {Chaudhuri, Kamalika and Salakhutdinov, Ruslan},
  volume = 	 {97},
  series = 	 {Proceedings of Machine Learning Research},
  month = 	 {09--15 Jun},
  publisher =    {PMLR},
}

@article{SUN2024103249,
title = {Medical image registration via neural fields},
journal = {Medical Image Analysis},
volume = {97},
pages = {103249},
year = {2024},
issn = {1361-8415},
author = {Shanlin Sun and Kun Han and Chenyu You and Hao Tang and Deying Kong and Junayed Naushad and Xiangyi Yan and Haoyu Ma and Pooya Khosravi and James S. Duncan and Xiaohui Xie},
keywords = {Optimization, Neural fields, Deformable image registration, Neural ODEs, Hybrid Coordinate samplers}
}


@article{fischer2003curvature,
  title={Curvature based image registration},
  author={Fischer, Bernd and Modersitzki, Jan},
  journal={Journal of Mathematical Imaging and Vision},
  volume={18},
  number={1},
  pages={81--85},
  year={2003},
  publisher={Springer}
}

@article{wasserthal2023,
  title={TotalSegmentator: robust segmentation of 104 anatomic structures in CT images},
  author={Wasserthal, Jakob and Breit, Hanns-Christian and Meyer, Manfred T and Pradella, Maurice and Hinck, Daniel and Sauter, Alexander W and Heye, Tobias and Boll, Daniel T and Cyriac, Joshy and Yang, Shan and others},
  journal={Radiology: Artificial Intelligence},
  volume={5},
  number={5},
  pages={e230024},
  year={2023},
  publisher={Radiological Society of North America}
}

@inproceedings{polzin2013,
  title={Combining automatic landmark detection and variational methods for lung CT registration},
  author={Polzin, Thomas and R{\"u}haak, Jan and Werner, Ren{\'e} and Strehlow, Jan and Heldmann, Stefan and Handels, Heinz and Modersitzki, Jan},
  booktitle={Fifth international workshop on pulmonary image analysis},
  pages={85--96},
  year={2013}
}
@article{vishnevskiy2016,
  title={Isotropic total variation regularization of displacements in parametric image registration},
  author={Vishnevskiy, Valery and Gass, Tobias and Szekely, Gabor and Tanner, Christine and Goksel, Orcun},
  journal={IEEE Transactions on Medical Imaging},
  volume={36},
  number={2},
  pages={385--395},
  year={2016},
  publisher={IEEE}
}
@article{hansen2021,
  title={GraphRegNet: Deep graph regularisation networks on sparse keypoints for dense registration of 3D lung CTs},
  author={Hansen, Lasse and Heinrich, Mattias P},
  journal={IEEE Transactions on Medical Imaging},
  volume={40},
  number={9},
  pages={2246--2257},
  year={2021},
  publisher={IEEE}
}

@inproceedings{MolaeiATKAAM23,
  title = {Implicit Neural Representation in Medical Imaging: A Comparative Survey},
  author = {Amirali Molaei and Amirhossein Aminimehr and Armin Tavakoli and Amirhossein Kazerouni and Bobby Azad and Reza Azad and Dorit Merhof},
  year = {2023},
  cites = {0},
  citedby = {0},
  pages = {2373-2383},
  booktitle = {IEEE/CVF International Conference on Computer Vision, ICCV 2023 - Workshops, Paris, France, October 2-6, 2023},
  publisher = {IEEE},
  isbn = {979-8-3503-0744-3},
}
  %doi = {10.1109/ICCVW60793.2023.00252},
  cites = {0},
  citedby = {0},
  pages = {2373-2383},
  booktitle = {IEEE/CVF International Conference on Computer Vision, ICCV 2023 - Workshops, Paris, France, October 2-6, 2023},
  publisher = {IEEE},
  isbn = {979-8-3503-0744-3},
}

@inproceedings{10.5555/3454287.3455008,
author = {Paszke, Adam and Gross, Sam and Massa, Francisco and Lerer, Adam and Bradbury, James and Chanan, Gregory and Killeen, Trevor and Lin, Zeming and Gimelshein, Natalia and Antiga, Luca and Desmaison, Alban and K\"{o}pf, Andreas and Yang, Edward and DeVito, Zach and Raison, Martin and Tejani, Alykhan and Chilamkurthy, Sasank and Steiner, Benoit and Fang, Lu and Bai, Junjie and Chintala, Soumith},
title = {PyTorch: an imperative style, high-performance deep learning library},
year = {2019},
publisher = {Curran Associates Inc.},
address = {Red Hook, NY, USA},
booktitle = {Proceedings of the 33rd International Conference on Neural Information Processing Systems},
articleno = {721},
numpages = {12}
}

@article{Harten2023,
author = {Harten, Louis and Stoker, Jaap and Išgum, Ivana},
year = {2023},
month = {10},
pages = {1-1},
title = {Robust Deformable Image Registration Using Cycle-Consistent Implicit Representations},
volume = {PP},
journal = {IEEE Transactions on Medical Imaging},

}
