The fastMRI Dataset

The Dataset: The fastMRI dataset, and related descriptions for each track can be found here. https://fastmri.org/dataset/. Each partition (train, validation or test) of the fastMRI data is distributed as a set of HDF5 files, such that each HDF5 file contains data from one MR acquisition. The set of fields and attributes in these HDF5 files depends on the track (single-coil or multi-coil) and the data partition. We use the multi-coil knee track in our experiments. The specific file names of the HDF5 files used in our experiments are presented below for the sake of reproducibility:

More information about the dataset is also available here: https://fastmri.med.nyu.edu/

The GitHub repository: This directory provides a reference data loader to read the fastMRI data one slice at a time and some useful data transforms to work with the data in PyTorch. https://github.com/facebookresearch/fastMRI/tree/master/fastmri/data
https://fastmri.org/dataset/

The fastMRI Subset Used In MRI Experiments:

The HDF5 file names containing the MRI acquisitions for the patients used in the training set are given below:

['file1001121.h5', 'file1000236.h5', 'file1001979.h5', 'file1002276.h5', 'file1001861.h5', 'file1000584.h5', 'file1000824.h5', 'file1001902.h5', 'file1000427.h5', 'file1002298.h5', 'file1001257.h5', 'file1000088.h5', 'file1001042.h5', 'file1001613.h5', 'file1000619.h5', 'file1002037.h5', 'file1002357.h5', 'file1000223.h5', 'file1000785.h5', 'file1001491.h5', 'file1001209.h5', 'file1001149.h5', 'file1000336.h5', 'file1001580.h5', 'file1000089.h5', 'file1000408.h5', 'file1000472.h5', 'file1001299.h5', 'file1001985.h5', 'file1002494.h5', 'file1001673.h5', 'file1002201.h5', 'file1000778.h5', 'file1000814.h5', 'file1001746.h5', 'file1000300.h5', 'file1001685.h5', 'file1000053.h5', 'file1001067.h5', 'file1001599.h5', 'file1002293.h5', 'file1001196.h5', 'file1001036.h5', 'file1001561.h5', 'file1000973.h5', 'file1001698.h5', 'file1002004.h5', 'file1000597.h5', 'file1001294.h5']

The HDF5 file names containing the MRI acquisitions for the patients used in the test set are given below:

['file1000033.h5', 'file1001096.h5', 'file1001344.h5', 'file1001497.h5', 'file1000831.h5', 'file1000267.h5', 'file1001843.h5', 'file1002340.h5', 'file1002159.h5', 'file1001170.h5']