Area2_Bump Data
A preprocessed version of the Area2Bump data has been included in the Area2_Bump folder. If you want to download the original data and preprocess it, go to link https://dandiarchive.org/dandiset/000127
and put it in Area2_Bump folder. Preprocessing code that we used is provided, see "Area2_Bump_Preprocess.py"


Model Training (Required a GPU)
To train the LSTM network, run "m-phate_big kernel_area2bump_interstep_combine_plots.py"


After the training:
To perform intra-step and inter-step entropy analysis, run "Area2_Bump_Figures.py"


After inter-step entropy analysis:
To perform clustering anlysis and subnetwork test, run "subnetwork_lstm_area2bump.py". This only works for lstm models.