\newcommand{\hmmax}{0}
\newcommand{\bmmax}{0}
\PassOptionsToPackage{ruled, vlined, linesnumbered}{algorithm2e}
\documentclass{midl} % Include author names

% The following packages will be automatically loaded:
% jmlr, amsmath, amssymb, natbib, graphicx, url, algorithm2e
% ifoddpage, relsize and probably more
% make sure they are installed with your latex distribution

\usepackage{mwe} % to get dummy images
\usepackage{amsmath}
\usepackage{amssymb}
\usepackage{mathbbol}
% \usepackage{algorithmic}
\usepackage{stix}
\usepackage{lineno}
% \usepackage[ruled,vlined]{algorithm2e}
% \newcommand\hmmax{0}
% \newcommand\bmmax{0}
% \input{preamble}



\usepackage{url}
\usepackage{tikz}
\usetikzlibrary{arrows.meta, positioning}
%\usepackage{amssymb}
\usepackage{amsmath}  % For mathematical symbols and formatting
\usepackage{bbm}
\usepackage{amsfonts}
\newcommand{\fix}{\marginpar{FIX}}
\newcommand{\new}{\marginpar{NEW}}
\newcommand{\ind}{\mathbbm{1}}
% \usepackage{algorithm}
% \usepackage{algorithm2e}
%\usepackage{algorithmic}
%\usepackage{algpseudocode}
% Reduce the spacing around \paragraph
% \makeatletter
% \renewcommand\paragraph{\@startsection{paragraph}{4}{\z@}%
%   {1ex \@plus1ex \@minus.5ex} % Space before
%   {0.ex}                     % Space after
%   {\normalfont\normalsize\bfseries}}
% \makeatother


\input{math_commands}
\usepackage{booktabs}
\usepackage[ruled,vlined,linesnumbered]{algorithm2e}

\jmlrvolume{-- 137}
\jmlryear{2026}
\jmlrworkshop{Full Paper -- MIDL 2026 submission}
\editors{Accepted for publication at MIDL 2026}

\title[Unpaired Multimodal Learning for Biological Datasets]{Unpaired Multimodal Learning for Biological Datasets}

 % Use \Name{Author Name} to specify the name.
 % If the surname contains spaces, enclose the surname
 % in braces, e.g. \Name{John {Smith Jones}} similarly
 % if the name has a "von" part, e.g \Name{Jane {de Winter}}.
 % If the first letter in the forenames is a diacritic
 % enclose the diacritic in braces, e.g. \Name{{\'E}louise Smith}

 % Two authors with the same address
 % \midlauthor{\Name{Author Name1} \Email{abc@sample.edu}\and
 %  \Name{Author Name2} \Email{xyz@sample.edu}\\
 %  \addr Address}

 % Three or more authors with the same address:
 % \midlauthor{\Name{Author Name1} \Email{an1@sample.edu}\\
 %  \Name{Author Name2} \Email{an2@sample.edu}\\
 %  \Name{Author Name3} \Email{an3@sample.edu}\\
 %  \addr Address}


% Authors with different addresses:
% \midlauthor{\Name{Author Name1} \Email{abc@sample.edu}\\
% \addr Address 1
% \AND
% \Name{Author Name2} \Email{xyz@sample.edu}\\
% \addr Address 2
% }

%\footnotetext[1]{Contributed equally}

% More complicate cases, e.g. with dual affiliations and joint authorship
% \midlauthor{\Name{Author Name1\midljointauthortext{Contributed equally}\nametag{$^{1,2}$}} \orcid{1111-2222-3333-4444} \Email{abc@sample.edu}\\
% \addr $^{1}$ Address 1 \\
% \addr $^{2}$ Address 2 \AND
% \Name{Author Name2\midlotherjointauthor\nametag{$^{1}$}} \Email{xyz@sample.edu}\\
% \Name{Author Name3\nametag{$^{2}$}} \Email{alphabeta@example.edu}\\
% \Name{Author Name4\midljointauthortext{Contributed equally}\nametag{$^{3}$}} \Email{uvw@foo.ac.uk}\\
% \addr $^{3}$ Address 3 \AND
% \Name{Author Name5\midlotherjointauthor\nametag{$^{4}$}} \Email{fgh@bar.com}\\
% \addr $^{4}$ Address 4
% }


\midlauthor{\Name{Zongliang Ji\nametag{$^{1,2,3}$}} \orcid{0000-0002-6791-5964} \Email{jerryji@cs.toronto.edu}\\
\Name{Cian Eastwood\nametag{$^{1}$}} \Email{cian@valencelabs.com}\\
\Name{Anna Goldenberg\nametag{$^{2,3}$}} \Email{anna.goldenberg@utoronto.ca}\\
\Name{Paul Pu Liang\nametag{$^{4}$}} \Email{ppliang@mit.edu}\\
\Name{Jason Hartford\nametag{$^{1}$}} \Email{jason@valencelabs.com}\\
\Name{Rahul G. Krishnan\nametag{$^{2,3}$}} \Email{rahulgk@cs.toronto.edu}\\
\Name{Emmanuel Noutahi\nametag{$^{1}$}} \Email{emmanuel@valencelabs.com}\\
\addr $^{1}$ Valence Labs \\
\addr $^{2}$ University of Toronto \\
\addr $^{3}$ Vector Institute \\
\addr $^{4}$ MIT
}


\usepackage[compact]{titlesec}

% Adjust the spacing: {command}{left}{before}{after}
% \titlespacing*{\section}{0pt}{4pt plus 1pt minus 1pt}{3pt plus 1pt minus 1pt}
\titlespacing*{\subsection}{0pt}{3pt plus 1pt minus 1pt}{2pt plus 1pt minus 1pt}
% \titlespacing*{\subsubsection}{0pt}{2pt plus 1pt minus 1pt}{1pt plus 1pt minus 1pt}

% Shrink space around figures/tables (captions)
\setlength{\floatsep}{4pt plus 2pt minus 2pt}
\setlength{\textfloatsep}{4pt plus 2pt minus 2pt}
\setlength{\intextsep}{4pt plus 2pt minus 2pt}
\setlength{\dbltextfloatsep}{4pt plus 2pt minus 2pt}

% Shrink space between items in lists (itemize/enumerate)
\usepackage{enumitem}
\setlist{nosep} % Eliminates vertical space in all lists


\begin{document}

\maketitle

% \begin{abstract}
% This is a great paper and it has a concise abstract.
% \end{abstract}

\begin{keywords}
Unpaired Contrastive Learning, Pathology Imaging, Spatial Transcriptomics
\end{keywords}

\input{sec/0_abstract}  

\input{sec/1_intro}
% \input{sec/2_relatedwork}
\input{sec/2_background}
\input{sec/3_methods}
\input{sec/4_experiments}
\input{sec/5_discussion}
%\input{sec/2_formatting}
%\input{sec/3_finalcopy}
\newpage 


\newpage




% \section{Introduction}

% This is where the content of your paper goes.  Some random
% notes\footnote{Random footnote are discouraged}:
% \begin{itemize}
% \item You should use \LaTeX \cite{Lamport:Book:1989}.
% \item JMLR/PMLR uses natbib for references. For simplicity, here, \verb|\cite|  defaults to
%   parenthetical citations, i.e. \verb|\citep|. You can of course also
%   use \verb|\citet| for textual citations.
% \item Eprints such as arXiv papers can of course be cited \cite{Hinton:arXiv:2015:Distilling}. We recomend using a \verb|@misc| bibtex entry for these as shown in the sample bibliography.
% \item You should follow the guidelines provided by the conference.
% \item Read through the JMLR template documentation for specific \LaTeX
%   usage questions.
% \item Note that the JMLR template provides many handy functionalities
% such as \verb|\figureref| to refer to a figure,
% e.g. \figureref{fig:example},  \verb|\tableref| to refer to a table,
% e.g. \tableref{tab:example} and \verb|\equationref| to refer to an equation,
% e.g. \equationref{eq:example}.
% \end{itemize}

% \begin{table}[htbp]
%  % The first argument is the label.
%  % The caption goes in the second argument, and the table contents
%  % go in the third argument.
% \floatconts
%   {tab:example}%
%   {\caption{An Example Table}}%
%   {\begin{tabular}{ll}
%   \bfseries Dataset & \bfseries Result\\
%   Data1 & 0.12345\\
%   Data2 & 0.67890\\
%   Data3 & 0.54321\\
%   Data4 & 0.09876
%   \end{tabular}}
% \end{table}

% \begin{figure}[htbp]
%  % Caption and label go in the first argument and the figure contents
%  % go in the second argument
% \floatconts
%   {fig:example}
%   {\caption{Example Image}}
%   {\includegraphics[width=0.5\linewidth]{example-image}}
% \end{figure}

% \begin{algorithm2e}
% \caption{Computing Net Activation}
% \label{alg:net}
%  % older versions of algorithm2e have \dontprintsemicolon instead
%  % of the following:
%  %\DontPrintSemicolon
%  % older versions of algorithm2e have \linesnumbered instead of the
%  % following:
%  %\LinesNumbered
% \KwIn{$x_1, \ldots, x_n, w_1, \ldots, w_n$}
% \KwOut{$y$, the net activation}
% $y\leftarrow 0$\;
% \For{$i\leftarrow 1$ \KwTo $n$}{
%   $y \leftarrow y + w_i*x_i$\;
% }
% \end{algorithm2e}

\clearpage  % Acknowledgements, references, and appendix do not count toward the page limit (if any)
% Acknowledgments---Will not appear in anonymized version
% \midlacknowledgments{We thank a bunch of people.}


\bibliography{midl26_137}


\appendix
\input{sec/X_suppl}
% \section{Proof of Theorem 1}

% This is a boring technical proof of
% \begin{equation}\label{eq:example}
% \cos^2\theta + \sin^2\theta \equiv 1.
% \end{equation}

% \section{Proof of Theorem 2}

% This is a complete version of a proof sketched in the main text.

\end{document}