@book{Lamport:Book:1989,
 author = {Lamport, Leslie},
 title = {Latex: A Document Preparation System},
 year = {1986},
 isbn = {0-201-15790-X},
 publisher = {Addison-Wesley Longman Publishing Co., Inc.},
 address = {Boston, MA, USA},
}

@misc{Hinton:arXiv:2015:Distilling,
 title={Distilling the knowledge in a neural network},
 author={Hinton, Geoffrey and Vinyals, Oriol and Dean, Jeff},
 OPTeprinttype={arXiv},
 OPTeprint={1503.02531},
 howpublished={Eprint \href{http://arxiv.org/abs/1503.02531}{arXiv:1503.02531}},
 OPTurl={http://arxiv.org/abs/1503.02531},
 year=2015
}

@book{em:86,
  editor  = "Engelmore, Robert and Morgan, Anthony",
  title   = "Blackboard Systems",
  year    = 1986,
  address = "Reading, Mass.",
  publisher = "Addison-Wesley",
}

@article{perovnik2023functional,
  title={Functional brain networks in the evaluation of patients with neurodegenerative disorders},
  author={Perovnik, Matej and Rus, Toma{\v{z}} and Schindlbeck, Katharina A and Eidelberg, David},
  journal={Nature Reviews Neurology},
  volume={19},
  number={2},
  pages={73--90},
  year={2023},
  publisher={Nature Publishing Group UK London}
}

@article{xu2020new,
  title={A new graph Gaussian embedding method for analyzing the effects of cognitive training},
  author={Xu, Mengjia and Wang, Zhijiang and Zhang, Haifeng and Pantazis, Dimitrios and Wang, Huali and Li, Quanzheng},
  journal={PLoS computational biology},
  volume={16},
  number={9},
  pages={e1008186},
  year={2020},
  publisher={Public Library of Science San Francisco, CA USA}
}
@article{xu2021graph,
  title={A graph Gaussian embedding method for predicting Alzheimer's disease progression with MEG brain networks},
  author={Xu, Mengjia and Sanz, David Lopez and Garces, Pilar and Maestu, Fernando and Li, Quanzheng and Pantazis, Dimitrios},
  journal={IEEE Transactions on Biomedical Engineering},
  volume={68},
  number={5},
  pages={1579--1588},
  year={2021},
  publisher={IEEE}
}
@article{baker2024hyperbolic,
  title={Hyperbolic graph embedding of MEG brain networks to study brain alterations in individuals with subjective cognitive decline},
  author={Baker, Cole and Su{\'a}rez-M{\'e}ndez, Isabel and Smith, Grace and Marsh, Elisabeth B and Funke, Michael and Mosher, John C and Maest{\'u}, Fernando and Xu, Mengjia and Pantazis, Dimitrios},
  journal={IEEE journal of biomedical and health informatics},
  volume={28},
  number={12},
  pages={7357--7368},
  year={2024},
  publisher={IEEE}
}
@inproceedings{c:83,
  author  = "Clancey, William J.",
  year    = 1983,
  title   = "{Communication, Simulation, and Intelligent
Agents: Implications of Personal Intelligent Machines
for Medical Education}",
  booktitle="Proceedings of the Eighth International Joint Conference on Artificial Intelligence {(IJCAI-83)}", 
  pages   = "556-560",
  address = "Menlo Park, Calif",
  publisher = "{IJCAI Organization}",
}
@inproceedings{c:84,
  author  = "Clancey, William J.",
  year    = 1984,
  title   = "{Classification Problem Solving}",
  booktitle = "Proceedings of the Fourth National 
              Conference on Artificial Intelligence",
  pages   = "45-54",
  address = "Menlo Park, Calif.",
  publisher="AAAI Press",
}
@article{r:80,
  author = {Robinson, Arthur L.},
  title = {New Ways to Make Microcircuits Smaller},
  volume = {208},
  number = {4447},
  pages = {1019--1022},
  year = {1980},
  doi = {10.1126/science.208.4447.1019},
  publisher = {American Association for the Advancement of Science},
  issn = {0036-8075},
  URL = {https://science.sciencemag.org/content/208/4447/1019},
  eprint = {https://science.sciencemag.org/content/208/4447/1019.full.pdf},
  journal = {Science},
}
@article{r:80x,
  author  = "Robinson, Arthur L.",
  year    = 1980,
  title   = "{New Ways to Make Microcircuits Smaller---Duplicate Entry}",
  journal = "Science",
  volume  =  208,
  pages   = "1019-1026",
}
@article{hcr:83,
title = {Strategic explanations for a diagnostic consultation system},
journal = {International Journal of Man-Machine Studies},
volume = {20},
number = {1},
pages = {3-19},
year = {1984},
issn = {0020-7373},
doi = {https://doi.org/10.1016/S0020-7373(84)80003-6},
url = {https://www.sciencedirect.com/science/article/pii/S0020737384800036},
author = {Diane Warner Hasling and William J. Clancey and Glenn Rennels},
}

@article{faskowitz2020edge,
  title={Edge-centric functional network representations of human cerebral cortex reveal overlapping system-level architecture},
  author={Faskowitz, Joshua and Esfahlani, Farnaz Zamani and Jo, Youngheun and Sporns, Olaf and Betzel, Richard F},
  journal={Nature neuroscience},
  volume={23},
  number={12},
  pages={1644--1654},
  year={2020},
  publisher={Nature Publishing Group US New York}
}
@article{hcrt:83,
  author  = "Hasling, Diane Warner and Clancey, William J. and Rennels, Glenn R. and Test, Thomas",
  year    = 1983,
  title   = "{Strategic Explanations in Consultation---Duplicate}",
  journal = "The International Journal of Man-Machine Studies",
  volume  = 20,
  number  = 1,
  pages   = "3-19",
}
@techreport{r:86,
  author  = "Rice, James",
  year    = 1986,
  title   = "{Poligon: A System for Parallel Problem Solving}",
  type    = "Technical Report", 
  number  = "KSL-86-19", 
  institution = "Dept.\ of Computer Science, Stanford Univ.",
}
@phdthesis{c:79,
  author  = "Clancey, William J.",
  year    = 1979,
  title   = "{Transfer of Rule-Based Expertise
through a Tutorial Dialogue}",
  type    = "{Ph.D.} diss.",
  school  = "Dept.\ of Computer Science, Stanford Univ.",
  address = "Stanford, Calif.",
}
@unpublished{c:21,
  author  = "Clancey, William J.",
  title   = "{The Engineering of Qualitative Models}",
  year    = 2021,
  note    = "Forthcoming",
}
@misc{c:22,
      title={Attention Is All You Need}, 
      author={Ashish Vaswani and Noam Shazeer and Niki Parmar and Jakob Uszkoreit and Llion Jones and Aidan N. Gomez and Lukasz Kaiser and Illia Polosukhin},
      year={2017},
      eprint={1706.03762},
      archivePrefix={arXiv},
      primaryClass={cs.CL}
}
@misc{c:23,
  title        = "Pluto: The 'Other' Red Planet",
  author       = "{NASA}",
  howpublished = "\url{https://www.nasa.gov/nh/pluto-the-other-red-planet}",
  year         = 2015,
  note         = "Accessed: 2018-12-06"
}

@incollection{ahrends2025dynamic,
  title={Dynamic functional connectivity},
  author={Ahrends, Christine and Vidaurre, Diego},
  booktitle={fMRI Techniques and Protocols},
  pages={333--375},
  year={2025},
  publisher={Springer}
}

@article{ahrends2025predicting,
  title={Predicting individual traits from models of brain dynamics accurately and reliably using the Fisher kernel},
  author={Ahrends, Christine and Woolrich, Mark W and Vidaurre, Diego},
  journal={eLife},
  volume={13},
  pages={RP95125},
  year={2025},
  publisher={eLife Sciences Publications Limited}
}

@article{kipf2016variational,
  title={Variational graph auto-encoders},
  author={Kipf, Thomas N and Welling, Max},
  journal={arXiv preprint arXiv:1611.07308},
  year={2016}
}

@article{mowinckel2012network,
  title={Network-specific effects of age and in-scanner subject motion: a resting-state fMRI study of 238 healthy adults},
  author={Mowinckel, Athanasia M and Espeseth, Thomas and Westlye, Lars T},
  journal={Neuroimage},
  volume={63},
  number={3},
  pages={1364--1373},
  year={2012},
  publisher={Elsevier}
}

@article{bi2020functional,
  title={Functional brain network classification for Alzheimer's disease detection with
         deep features and extreme learning machine},
  author={Bi, Xin and Zhao, Xiangguo and Huang, Hong and Chen, Deyang and Ma, Yuliang},
  journal={Cognitive Computation},
  volume={12},
  pages={513--527},
  year={2020},
  publisher={Springer}
}



@misc{seo2016structuredsequencemodelinggraph,
      title={Structured Sequence Modeling with Graph Convolutional Recurrent Networks}, 
      author={Youngjoo Seo and Micha{\"e}l Defferrard and Pierre Vandergheynst and Xavier Bresson},
      year={2016},
      eprint={1612.07659},
      archivePrefix={arXiv},
      primaryClass={stat.ML},
      url={https://arxiv.org/abs/1612.07659}, 
}

@misc{pareja2019evolvegcnevolvinggraphconvolutional,
      title={EvolveGCN: Evolving Graph Convolutional Networks for Dynamic Graphs}, 
      author={Aldo Pareja and Giacomo Domeniconi and Jie Chen and Tengfei Ma and Toyotaro Suzumura and Hiroki Kanezashi and Tim Kaler and Tao B. Schardl and Charles E. Leiserson},
      year={2019},
      eprint={1902.10191},
      archivePrefix={arXiv},
      primaryClass={cs.LG},
      url={https://arxiv.org/abs/1902.10191}, 
}
@article{yu2024long,
  title={Long-range brain graph transformer},
  author={Yu, Shuo and Jin, Shan and Li, Ming and Sarwar, Tabinda and Xia, Feng},
  journal={Advances in Neural Information Processing Systems},
  volume={37},
  pages={24472--24495},
  year={2024}
}
@article{vaswani2017attention,
  title={Attention is all you need},
  author={Vaswani, Ashish and Shazeer, Noam and Parmar, Niki and Uszkoreit, Jakob and Jones, Llion and Gomez, Aidan N and Kaiser, {\L}ukasz and Polosukhin, Illia},
  journal={Advances in neural information processing systems},
  volume={30},
  year={2017}
}
@article{gu2021efficiently,
  title={Efficiently modeling long sequences with structured state spaces},
  author={Gu, Albert and Goel, Karan and R{\'e}, Christopher},
  journal={arXiv preprint arXiv:2111.00396},
  year={2021}
}
@article{wang2024stnagnn,
  title={STNAGNN: Data-driven Spatio-temporal Brain Connectivity beyond FC},
  author={Wang, Jiyao and Dvornek, Nicha C and Duan, Peiyu and Staib, Lawrence H and Ventola, Pamela and Duncan, James S},
  journal={arXiv preprint arXiv:2406.12065},
  year={2024}
}
@inproceedings{gadgil2020spatio,
  title={Spatio-temporal graph convolution for resting-state fMRI analysis},
  author={Gadgil, Soham and Zhao, Qingyu and Pfefferbaum, Adolf and Sullivan, Edith V and Adeli, Ehsan and Pohl, Kilian M},
  booktitle={International conference on medical image computing and computer-assisted intervention},
  pages={528--538},
  year={2020},
  organization={Springer}
}
@article{cao2022modeling,
  title={Modeling the dynamic brain network representation for autism spectrum disorder diagnosis},
  author={Cao, Peng and Wen, Guangqi and Liu, Xiaoli and Yang, Jinzhu and Zaiane, Osmar R},
  journal={Medical \& Biological Engineering \& Computing},
  volume={60},
  number={7},
  pages={1897--1913},
  year={2022},
  publisher={Springer}
}
@article{kim2021learning,
  title={Learning dynamic graph representation of brain connectome with spatio-temporal attention},
  author={Kim, Byung-Hoon and Ye, Jong Chul and Kim, Jae-Jin},
  journal={Advances in Neural Information Processing Systems},
  volume={34},
  pages={4314--4327},
  year={2021}
}
@article{azevedo2022deep,
  title={A deep graph neural network architecture for modelling spatio-temporal dynamics in resting-state functional MRI data},
  author={Azevedo, Tiago and Campbell, Alexander and Romero-Garcia, Rafael and Passamonti, Luca and Bethlehem, Richard AI and Lio, Pietro and Toschi, Nicola},
  journal={Medical Image Analysis},
  volume={79},
  pages={102471},
  year={2022},
  publisher={Elsevier}
}
@misc{zhou2024selfsupervisedpretrainingtasksfmri,
      title={Self-Supervised Pre-training Tasks for an fMRI Time-series Transformer in Autism Detection}, 
      author={Yinchi Zhou and Peiyu Duan and Yuexi Du and Nicha C. Dvornek},
      year={2024},
      eprint={2409.12304},
      archivePrefix={arXiv},
      primaryClass={cs.CV},
      url={https://arxiv.org/abs/2409.12304}, 
}

@misc{behrouz2024graphmambalearninggraphs,
      title={Graph Mamba: Towards Learning on Graphs with State Space Models}, 
      author={Ali Behrouz and Farnoosh Hashemi},
      year={2024},
      eprint={2402.08678},
      archivePrefix={arXiv},
      primaryClass={cs.LG},
      url={https://arxiv.org/abs/2402.08678}, 
}

@article{glasser2016hcp,
  author    = {Glasser, Matthew F. and Smith, Stephen M. and Marcus, Daniel S. and Andersson, Jesper L. and Auerbach, Eric J. and Behrens, Timothy E. and Coalson, Timothy S. and Harms, Michael P. and Jenkinson, Mark and Moeller, Steen and Robinson, Emma C. and Sotiropoulos, Stamatios N. and Xu, Junqian and Yacoub, Essa and Ugurbil, Kamil and Van Essen, David C.},
  title     = {The Human Connectome Project's neuroimaging approach},
  journal   = {Nature Neuroscience},
  volume    = {19},
  number    = {9},
  pages     = {1175--1187},
  year      = {2016},
  month     = aug,
  doi       = {10.1038/nn.4361},
  pmid      = {27571196},
  pmcid     = {PMC6172654},
  publisher = {Nature Publishing Group}
}



@article{PARK2018114,
title = {Dynamic functional connectivity analysis reveals improved association between brain networks and eating behaviors compared to static analysis},
journal = {Behavioural Brain Research},
volume = {337},
pages = {114-121},
year = {2018},
issn = {0166-4328},
doi = {https://doi.org/10.1016/j.bbr.2017.10.001},
url = {https://www.sciencedirect.com/science/article/pii/S0166432817314249},
author = {Bo-yong Park and Taesup Moon and Hyunjin Park},
}

@misc{kan2022brainnetworktransformer,
      title={Brain Network Transformer}, 
      author={Xuan Kan and Wei Dai and Hejie Cui and Zilong Zhang and Ying Guo and Carl Yang},
      year={2022},
      eprint={2210.06681},
      archivePrefix={arXiv},
      primaryClass={cs.LG},
      url={https://arxiv.org/abs/2210.06681}, 
}


@Article{s25010156,
AUTHOR = {Tang, Jun and Chen, Jie and Hu, Miaojun and Hu, Yao and Zhang, Zixi and Xiao, Liuming},
TITLE = {Diagnosis of Autism Spectrum Disorder (ASD) by Dynamic Functional Connectivity Using GNN-LSTM},
JOURNAL = {Sensors},
VOLUME = {25},
YEAR = {2025},
NUMBER = {1},
ARTICLE-NUMBER = {156},
URL = {https://www.mdpi.com/1424-8220/25/1/156},
PubMedID = {39796946},
ISSN = {1424-8220},
DOI = {10.3390/s25010156}
}


@article{WANG2025130582,
title = {A novel graph neural network framework for resting-state functional MRI spatiotemporal dynamics analysis},
journal = {Physica A: Statistical Mechanics and its Applications},
volume = {669},
pages = {130582},
year = {2025},
issn = {0378-4371},
doi = {https://doi.org/10.1016/j.physa.2025.130582},
url = {https://www.sciencedirect.com/science/article/pii/S0378437125002341},
author = {Tao Wang and Zenghui Ding and Zheng Chang and Xianjun Yang and Yanyan Chen and Meng Li and Shu Xu and Yu Wang},
}


@inproceedings{wang2024learning,
  title={Learning dynamic brain network representation based on graph mamba architecture},
  author={Wang, Jingjie and Lang, Jinwei and Yang, Li-Zhuang and Li, Hai},
  booktitle={2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)},
  pages={5143--5150},
  year={2024},
  organization={IEEE}
}

@inproceedings{wei2025hierarchical,
  title={Hierarchical spatio-temporal state-space modeling for fmri analysis},
  author={Wei, Yuxiang and Abrol, Anees and Calhoun, Vince D},
  booktitle={International Conference on Research in Computational Molecular Biology},
  pages={86--98},
  year={2025},
  organization={Springer}
}


@misc{zrimek2025dynstgmambadynamicspatiotemporalgraph,
      title={DynSTG-Mamba: Dynamic Spatio-Temporal Graph Mamba with Cross-Graph Knowledge Distillation for Gait Disorders Recognition}, 
      author={Zakariae Zrimek and Youssef Mourchid and Mohammed El Hassouni},
      year={2025},
      eprint={2503.13156},
      archivePrefix={arXiv},
      primaryClass={cs.CV},
      url={https://arxiv.org/abs/2503.13156}, 
}

@misc{ding2024machinelearningdynamicfunctional,
      title={Machine Learning on Dynamic Functional Connectivity: Promise, Pitfalls, and Interpretations}, 
      author={Jiaqi Ding and Tingting Dan and Ziquan Wei and Hyuna Cho and Paul J. Laurienti and Won Hwa Kim and Guorong Wu},
      year={2024},
      eprint={2409.11377},
      archivePrefix={arXiv},
      primaryClass={cs.LG},
      url={https://arxiv.org/abs/2409.11377}, 
}

@article{CHEN2024120771,
title = {Explainable spatio-temporal graph evolution learning with applications to dynamic brain network analysis during development},
journal = {NeuroImage},
volume = {298},
pages = {120771},
year = {2024},
issn = {1053-8119},
doi = {https://doi.org/10.1016/j.neuroimage.2024.120771},
url = {https://www.sciencedirect.com/science/article/pii/S1053811924002684},
author = {Longyun Chen and Chen Qiao and Kai Ren and Gang Qu and Vince D. Calhoun and Julia M. Stephen and Tony W. Wilson and Yu-Ping Wang}
}
@article{hutchison2013dynamic,
  title={Dynamic functional connectivity: promise, issues, and interpretations},
  author={Hutchison, R Matthew and Womelsdorf, Thilo and Allen, Elena A and Bandettini, Peter A and Calhoun, Vince D and Corbetta, Maurizio and Della Penna, Stefania and Duyn, Jeff H and Glover, Gary H and Gonzalez-Castillo, Javier and others},
  journal={Neuroimage},
  volume={80},
  pages={360--378},
  year={2013},
  publisher={Elsevier}
}
@article{dao2024transformers,
  title={Transformers are ssms: Generalized models and efficient algorithms through structured state space duality},
  author={Dao, Tri and Gu, Albert},
  journal={arXiv preprint arXiv:2405.21060},
  year={2024}
}

@article{thompson2017static,
  title={From static to temporal network theory: Applications to functional brain connectivity},
  author={Thompson, William Hedley and Brantefors, Per and Fransson, Peter},
  journal={Network Neuroscience},
  volume={1},
  number={2},
  pages={69--99},
  year={2017},
  publisher={MIT Press One Rogers Street, Cambridge, MA 02142-1209, USA}
}

@article{biswal1995functional,
  title={Functional connectivity in the motor cortex of resting human brain using echo-planar MRI},
  author={Biswal, Bharat and Zerrin Yetkin, F and Haughton, Victor M and Hyde, James S},
  journal={Magnetic resonance in medicine},
  volume={34},
  number={4},
  pages={537--541},
  year={1995},
  publisher={Wiley Online Library}
}
@article{shen2015resting,
  title={Resting-state connectivity},
  author={Shen, Helen H},
  journal={Proceedings of the National Academy of Sciences},
  volume={112},
  number={46},
  pages={14115--14116},
  year={2015},
  publisher={National Academy of Sciences}
}
@article{smith2013functional,
  title={Functional connectomics from resting-state fMRI},
  author={Smith, Stephen M and Vidaurre, Diego and Beckmann, Christian F and Glasser, Matthew F and Jenkinson, Mark and Miller, Karla L and Nichols, Thomas E and Robinson, Emma C and Salimi-Khorshidi, Gholamreza and Woolrich, Mark W and others},
  journal={Trends in cognitive sciences},
  volume={17},
  number={12},
  pages={666--682},
  year={2013},
  publisher={Elsevier}
}
@article{alteriis2025dysco,
  title={DySCo: A general framework for dynamic functional connectivity},
  author={Alteriis, Giuseppe de and Sherwood, Oliver and Ciaramella, Alessandro and Leech, Robert and Cabral, Joana and Turkheimer, Federico E and Expert, Paul},
  journal={PLoS Computational Biology},
  volume={21},
  number={3},
  pages={e1012795},
  year={2025},
  publisher={Public Library of Science San Francisco, CA USA}
}

@article{lurie2018nature,
  title={On the nature of resting fMRI and time-varying functional connectivity},
  author={Lurie, Daniel J and Kessler, Daniel and Bassett, Danielle and Betzel, Richard F and Breakspear, Michael and Keilholz, Shella and Kucyi, Aaron and Liegeois, Raphael and Lindquist, Martin A and McIntosh, Anthony Randal and others},
  journal={Advance online publication. Retrieved December},
  volume={24},
  number={2018},
  pages={10--31234},
  year={2018}
}
@article{biswal2025history,
  title={The history and future of resting-state functional magnetic resonance imaging},
  author={Biswal, Bharat B and Uddin, Lucina Q},
  journal={Nature},
  volume={641},
  number={8065},
  pages={1121--1131},
  year={2025},
  publisher={Nature Publishing Group UK London}
}
@inproceedings{turja2023deepgraphdmd,
  title={DeepGraphDMD: Interpretable Spatio-Temporal Decomposition of Non-linear Functional Brain Network Dynamics},
  author={Turja, Md Asadullah and Styner, Martin and Wu, Guorong},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={358--368},
  year={2023},
  organization={Springer}
}
@article{leonardi2013principal,
  title={Principal components of functional connectivity: a new approach to study dynamic brain connectivity during rest},
  author={Leonardi, Nora and Richiardi, Jonas and Gschwind, Markus and Simioni, Samanta and Annoni, Jean-Marie and Schluep, Myriam and Vuilleumier, Patrik and Van De Ville, Dimitri},
  journal={NeuroImage},
  volume={83},
  pages={937--950},
  year={2013},
  publisher={Elsevier}
}
@article{laumann2024challenges,
  title={Challenges in the measurement and interpretation of dynamic functional connectivity},
  author={Laumann, Timothy O and Snyder, Abraham Z and Gratton, Caterina},
  journal={Imaging Neuroscience},
  volume={2},
  pages={1--19},
  year={2024},
  publisher={MIT Press 255 Main Street, 9th Floor, Cambridge, Massachusetts 02142, USA}
}
@article{torabi2024variability,
  title={On the variability of dynamic functional connectivity assessment methods},
  author={Torabi, Mohammad and Mitsis, Georgios D and Poline, Jean-Baptiste},
  journal={GigaScience},
  volume={13},
  pages={giae009},
  year={2024},
  publisher={Oxford University Press}
}

@article{sakouglu2010method,
  title={A method for evaluating dynamic functional network connectivity and task-modulation: application to schizophrenia},
  author={Sako{\u{g}}lu, {\"U}nal and Pearlson, Godfrey D and Kiehl, Kent A and Wang, Y Michelle and Michael, Andrew M and Calhoun, Vince D},
  journal={Magnetic Resonance Materials in Physics, Biology and Medicine},
  volume={23},
  pages={351--366},
  year={2010},
  publisher={Springer}
}
@article{van2024dynamic,
  title={Dynamic functional connectivity in pediatric mild traumatic brain injury},
  author={van der Horn, Harm J and Ling, Josef M and Wick, Tracey V and Dodd, Andrew B and Robertson-Benta, Cidney R and McQuaid, Jessica R and Zotev, Vadim and Vakhtin, Andrei A and Ryman, Sephira G and Cabral, Joana and others},
  journal={Neuroimage},
  volume={285},
  pages={120470},
  year={2024},
  publisher={Elsevier}
}
@article{spencer2022using,
  title={Using deep clustering to improve fMRI dynamic functional connectivity analysis},
  author={Spencer, Arthur PC and Goodfellow, Marc},
  journal={NeuroImage},
  volume={257},
  pages={119288},
  year={2022},
  publisher={Elsevier}
}
@article{allen2014tracking,
  title={Tracking whole-brain connectivity dynamics in the resting state},
  author={Allen, Elena A and Damaraju, Eswar and Plis, Sergey M and Erhardt, Erik B and Eichele, Tom and Calhoun, Vince D},
  journal={Cerebral cortex},
  volume={24},
  number={3},
  pages={663--676},
  year={2014},
  publisher={Oxford University Press}
}


@article{ou2015characterizing,
  title={Characterizing and differentiating brain state dynamics via hidden Markov models},
  author={Ou, Jinli and Xie, Li and Jin, Changfeng and Li, Xiang and Zhu, Dajiang and Jiang, Rongxin and Chen, Yaowu and Zhang, Jing and Li, Lingjiang and Liu, Tianming},
  journal={Brain topography},
  volume={28},
  pages={666--679},
  year={2015},
  publisher={Springer}
}
@article{vidaurre2017brain,
  title={Brain network dynamics are hierarchically organized in time},
  author={Vidaurre, Diego and Smith, Stephen M and Woolrich, Mark W},
  journal={Proceedings of the National Academy of Sciences},
  volume={114},
  number={48},
  pages={12827--12832},
  year={2017},
  publisher={National Academy of Sciences}
}

@article{raichle2001default,
  title={A default mode of brain function},
  author={Raichle, Marcus E and MacLeod, Ann Mary and Snyder, Abraham Z and Powers, William J and Gusnard, Debra A and Shulman, Gordon L},
  journal={Proceedings of the national academy of sciences},
  volume={98},
  number={2},
  pages={676--682},
  year={2001},
  publisher={The National Academy of Sciences}
}

@article{poursafaei2022towards,
  title={Towards better evaluation for dynamic link prediction},
  author={Poursafaei, Farimah and Huang, Shenyang and Pelrine, Kellin and Rabbany, Reihaneh},
  journal={Advances in Neural Information Processing Systems},
  volume={35},
  pages={32928--32941},
  year={2022}
}

@article{parmanand2024comparative,
  title={A Comparative Study on Dynamic Graph Embedding based on Mamba and Transformers},
  author={Parmanand Pandey, Ashish and Varghese, Alan John and Patil, Sarang and Xu, Mengjia},
  journal={arXiv e-prints},
  pages={arXiv--2412},
  year={2024}
}

@article{bojchevski2017deep,
  title={Deep gaussian embedding of graphs: Unsupervised inductive learning via ranking},
  author={Bojchevski, Aleksandar and G{\"u}nnemann, Stephan},
  journal={arXiv preprint arXiv:1707.03815},
  year={2017}
}

@article{hu2019strategies,
  title={Strategies for pre-training graph neural networks},
  author={Hu, Weihua and Liu, Bowen and Gomes, Joseph and Zitnik, Marinka and Liang, Percy and Pande, Vijay and Leskovec, Jure},
  journal={arXiv preprint arXiv:1905.12265},
  year={2019}
}



@article{gu2023mamba,
  title={Mamba: Linear-time sequence modeling with selective state spaces},
  author={Gu, Albert and Dao, Tri},
  journal={arXiv preprint arXiv:2312.00752},
  year={2023}
}

@article{zhang2022classification,
  title={Classification of brain disorders in rs-fMRI via local-to-global graph neural networks},
  author={Zhang, Hao and Song, Ran and Wang, Liping and Zhang, Lin and Wang, Dawei and Wang, Cong and Zhang, Wei},
  journal={IEEE transactions on medical imaging},
  volume={42},
  number={2},
  pages={444--455},
  year={2022},
  publisher={IEEE}
}
@article{park2013structural,
  title={Structural and functional brain networks: from connections to cognition},
  author={Park, Hae-Jeong and Friston, Karl},
  journal={Science},
  volume={342},
  number={6158},
  pages={1238411},
  year={2013},
  publisher={American Association for the Advancement of Science}
}
@article{power2011functional,
  title={Functional network organization of the human brain},
  author={Power, Jonathan D and Cohen, Alexander L and Nelson, Steven M and Wig, Gagan S and Barnes, Kelly Anne and Church, Jessica A and Vogel, Alecia C and Laumann, Timothy O and Miezin, Fran M and Schlaggar, Bradley L and others},
  journal={Neuron},
  volume={72},
  number={4},
  pages={665--678},
  year={2011},
  publisher={Elsevier}
}

@article{kipf2016semi,
  title={Semi-Supervised Classification with Graph Convolutional Networks},
  author={Kipf, TN},
  journal={arXiv preprint arXiv:1609.02907},
  year={2016}
}

@article{hamilton2017inductive,
  title={Inductive representation learning on large graphs},
  author={Hamilton, Will and Ying, Zhitao and Leskovec, Jure},
  journal={Advances in neural information processing systems},
  volume={30},
  year={2017}
}

@article{velivckovic2017graph,
  title={Graph attention networks},
  author={Veli{\v{c}}kovi{\'c}, Petar and Cucurull, Guillem and Casanova, Arantxa and Romero, Adriana and Lio, Pietro and Bengio, Yoshua},
  journal={arXiv preprint arXiv:1710.10903},
  year={2017}
}

@article{xu2018powerful,
  title={How powerful are graph neural networks?},
  author={Xu, Keyulu and Hu, Weihua and Leskovec, Jure and Jegelka, Stefanie},
  journal={arXiv preprint arXiv:1810.00826},
  year={2018}
}

@inproceedings{seo2018structured,
  title={Structured sequence modeling with graph convolutional recurrent networks},
  author={Seo, Youngjoo and Defferrard, Micha{\"e}l and Vandergheynst, Pierre and Bresson, Xavier},
  booktitle={International conference on neural information processing},
  pages={362--373},
  year={2018},
  organization={Springer}
}
@article{chen2022gc,
  title={GC-LSTM: Graph convolution embedded LSTM for dynamic network link prediction},
  author={Chen, Jinyin and Wang, Xueke and Xu, Xuanheng},
  journal={Applied Intelligence},
  volume={52},
  number={7},
  pages={7513--7528},
  year={2022},
  publisher={Springer}
}

@article{hajiramezanali2019variational,
  title={Variational graph recurrent neural networks},
  author={Hajiramezanali, Ehsan and Hasanzadeh, Arman and Narayanan, Krishna and Duffield, Nick and Zhou, Mingyuan and Qian, Xiaoning},
  journal={Advances in neural information processing systems},
  volume={32},
  year={2019}
}


@article{varghese2024transformerg2g,
  title={TransformerG2G: Adaptive time-stepping for learning temporal graph embeddings using transformers},
  author={Varghese, Alan John and Bora, Aniruddha and Xu, Mengjia and Karniadakis, George Em},
  journal={Neural Networks},
  volume={172},
  pages={106086},
  year={2024},
  publisher={Elsevier}
}

@article{pandey2024comparative,
  title={A Comparative Study on Dynamic Graph Embedding based on Mamba and Transformers},
  author={Pandey, Ashish Parmanand and Varghese, Alan John and Patil, Sarang and Xu, Mengjia},
  journal={arXiv preprint arXiv:2412.11293},
  year={2024}
}

@article{van2013wu,
  title={The WU-Minn human connectome project: an overview},
  author={Van Essen, David C and Smith, Stephen M and Barch, Deanna M and Behrens, Timothy EJ and Yacoub, Essa and Ugurbil, Kamil and Wu-Minn HCP Consortium and others},
  journal={Neuroimage},
  volume={80},
  pages={62--79},
  year={2013},
  publisher={Elsevier}
}

@article{smith2013resting,
  title={Resting-state fMRI in the human connectome project},
  author={Smith, Stephen M and Beckmann, Christian F and Andersson, Jesper and Auerbach, Edward J and Bijsterbosch, Janine and Douaud, Gwena{\"e}lle and Duff, Eugene and Feinberg, David A and Griffanti, Ludovica and Harms, Michael P and others},
  journal={Neuroimage},
  volume={80},
  pages={144--168},
  year={2013},
  publisher={Elsevier}
}

@article{schaefer2018local,
  title={Local-global parcellation of the human cerebral cortex from intrinsic functional connectivity MRI},
  author={Schaefer, Alexander and Kong, Ru and Gordon, Evan M and Laumann, Timothy O and Zuo, Xi-Nian and Holmes, Avram J and Eickhoff, Simon B and Yeo, BT Thomas},
  journal={Cerebral cortex},
  volume={28},
  number={9},
  pages={3095--3114},
  year={2018},
  publisher={Oxford University Press}
}

@article{ahrends2022data,
  title={Data and model considerations for estimating time-varying functional connectivity in fMRI},
  author={Ahrends, C and Stevner, Angus and Pervaiz, Usama and Kringelbach, Morten L and Vuust, Peter and Woolrich, Mark W and Vidaurre, Diego},
  journal={NeuroImage},
  volume={252},
  pages={119026},
  year={2022},
  publisher={Elsevier}
}

@article{xu2022dyng2g,
  title={DynG2G: An efficient stochastic graph embedding method for temporal graphs},
  author={Xu, Mengjia and Singh, Apoorva Vikram and Karniadakis, George Em},
  journal={IEEE Transactions on Neural Networks and Learning Systems},
  volume={35},
  number={1},
  pages={985--998},
  year={2022},
  publisher={IEEE}
}

@article{hutchison2013resting,
  title={Resting-state networks show dynamic functional connectivity in awake humans and anesthetized macaques},
  author={Hutchison, R Matthew and Womelsdorf, Thilo and Gati, Joseph S and Everling, Stefan and Menon, Ravi S},
  journal={Human brain mapping},
  volume={34},
  number={9},
  pages={2154--2177},
  year={2013},
  publisher={Wiley Online Library}
}