@article{brookmeyer2007forecasting,
  title={Forecasting the global burden of Alzheimer’s disease},
  author={Brookmeyer, Ron and Johnson, Elizabeth and Ziegler-Graham, Kathryn and Arrighi, H Michael},
  journal={Alzheimer's \& dementia},
  volume={3},
  number={3},
  pages={186--191},
  year={2007},
  publisher={Elsevier}
}

@misc{xie2016unsuperviseddeepembeddingclustering,
      title={Unsupervised Deep Embedding for Clustering Analysis}, 
      author={Junyuan Xie and Ross Girshick and Ali Farhadi},
      year={2016},
      eprint={1511.06335},
      archivePrefix={arXiv},
      primaryClass={cs.LG},
      url={https://arxiv.org/abs/1511.06335}, 
}

@article{blennow2006alzheimer,
  title={Alzheimer's disease},
  author={Blennow, Kaj and de Leon, Mony J and Zetterberg, Henrik},
  journal={The Lancet},
  volume={368},
  number={9533},
  pages={387--403},
  year={2006},
  publisher={Elsevier}
}

@article{mayeux1999treatment,
  title={Treatment of Alzheimer's disease},
  author={Mayeux, Richard and Sano, Mary},
  journal={New England Journal of Medicine},
  volume={341},
  number={22},
  pages={1670--1679},
  year={1999},
  publisher={Mass Medical Soc}
}

@article{ferretti2001anxiety,
  title={Anxiety and Alzheimer's disease},
  author={Ferretti, Louise and McCurry, Susan M and Logsdon, Rebecca and Gibbons, Laura and Teri, Linda},
  journal={Journal of geriatric psychiatry and neurology},
  volume={14},
  number={1},
  pages={52--58},
  year={2001},
  publisher={Sage Publications Sage CA: Thousand Oaks, CA}
}

@article{porter2003frequency,
  title={Frequency and characteristics of anxiety among patients with Alzheimer's disease and related dementias},
  author={Porter, Verna R and Buxton, William G and Fairbanks, Lynn A and Strickland, Tony and O'Connor, Susan M and Rosenberg-Thompson, Susan and Cummings, Jeffrey L},
  journal={The Journal of neuropsychiatry and clinical neurosciences},
  volume={15},
  number={2},
  pages={180--186},
  year={2003},
  publisher={Am Neuropsych Assoc}
}

@article{patel2021relationship,
  title={The relationship of anxiety with alzheimer’s disease: A narrative review},
  author={Patel, Palak and Masurkar, Arjun V},
  journal={Current Alzheimer Research},
  volume={18},
  number={5},
  pages={359--371},
  year={2021},
  publisher={Bentham Science Publishers}
}

@article{patel2021prevalence,
  title={Prevalence, risk factors, and impact of anxiety in the early stages of autopsy-confirmed Alzheimer’s disease: a retrospective study (1839)},
  author={Patel, Palak and Masurkar, Arjun},
  journal={Neurology},
  volume={96},
  number={15\_supplement},
  pages={1839},
  year={2021},
  publisher={AAN Enterprises}
}

@article{marchant2015cognitive,
  title={Cognitive debt and Alzheimer's disease},
  author={Marchant, Natalie L and Howard, Robert J},
  journal={Journal of Alzheimer's disease},
  volume={44},
  number={3},
  pages={755--770},
  year={2015},
  publisher={IOS Press}
}

@article{chemerinski1998prevalence,
  title={Prevalence and correlates of anxiety in Alzheimer's disease},
  author={Chemerinski, Er{\'a}n and Petracca, Gustavo and Manes, Facundo and Leiguarda, Ram{\'o}n and Starkstein, Sergio E},
  journal={Depression and anxiety},
  volume={7},
  number={4},
  pages={166--170},
  year={1998},
  publisher={Wiley Online Library}
}

@article{becker2018anxiety,
  title={Anxiety as a risk factor of Alzheimer's disease and vascular dementia},
  author={Becker, Eva and Rios, Claudia Lorena Orellana and Lahmann, Claas and Ruecker, Gerta and Bauer, Joachim and Boeker, Martin},
  journal={The British Journal of Psychiatry},
  volume={213},
  number={5},
  pages={654--660},
  year={2018},
  publisher={Cambridge University Press}
}

@article{mah2015anxiety,
  title={Anxiety symptoms in amnestic mild cognitive impairment are associated with medial temporal atrophy and predict conversion to Alzheimer disease},
  author={Mah, Linda and Binns, Malcolm A and Steffens, David C and Alzheimer's Disease Neuroimaging Initiative and others},
  journal={The American Journal of Geriatric Psychiatry},
  volume={23},
  number={5},
  pages={466--476},
  year={2015},
  publisher={Elsevier}
}

@article{sperling2011potential,
  title={The potential of functional MRI as a biomarker in early Alzheimer's disease},
  author={Sperling, Reisa},
  journal={Neurobiology of aging},
  volume={32},
  pages={S37--S43},
  year={2011},
  publisher={Elsevier}
}

@article{tozzi2024personalized,
  title={Personalized brain circuit scores identify clinically distinct biotypes in depression and anxiety},
  author={Tozzi, Leonardo and Zhang, Xue and Pines, Adam and Olmsted, Alisa M and Zhai, Emily S and Anene, Esther T and Chesnut, Megan and Holt-Gosselin, Bailey and Chang, Sarah and Stetz, Patrick C and others},
  journal={Nature Medicine},
  pages={1--12},
  year={2024},
  publisher={Nature Publishing Group US New York}
}

@article{drysdale2017resting,
  title={Resting-state connectivity biomarkers define neurophysiological subtypes of depression},
  author={Drysdale, Andrew T and Grosenick, Logan and Downar, Jonathan and Dunlop, Katharine and Mansouri, Farrokh and Meng, Yue and Fetcho, Robert N and Zebley, Benjamin and Oathes, Desmond J and Etkin, Amit and others},
  journal={Nature medicine},
  volume={23},
  number={1},
  pages={28--38},
  year={2017},
  publisher={Nature Publishing Group US New York}
}

@article{brenes2006age,
  title={Age differences in the presentation of anxiety},
  author={Brenes, Gretchen A},
  journal={Aging and Mental Health},
  volume={10},
  number={3},
  pages={298--302},
  year={2006},
  publisher={Taylor \& Francis}
}

@article{bassil2011anxiety,
  title={How anxiety presents differently in older adults},
  author={Bassil, Nazem and Ghandour, Abdalraouf and Grossberg, George T},
  journal={Current Psychiatry},
  volume={10},
  number={3},
  pages={65--71},
  year={2011}
}

@article{tagai2014correlation,
  title={Correlation between both morphologic and functional changes and anxiety in Alzheimer's disease},
  author={Tagai, Kenji and Nagata, Tomoyuki and Shinagawa, Shunichiro and Nemoto, Kiyotaka and Inamura, Keisuke and Tsuno, Norifumi and Nakayama, Kazuhiko},
  journal={Dementia and geriatric cognitive disorders},
  volume={38},
  number={3-4},
  pages={153--160},
  year={2014},
  publisher={S. Karger AG}
}

@article{waner2023connecting,
  title={Connecting memory and functional brain networks in older adults: a resting-state fMRI study},
  author={Waner, Jori L and Hausman, Hanna K and Kraft, Jessica N and Hardcastle, Cheshire and Evangelista, Nicole D and O’Shea, Andrew and Albizu, Alejandro and Boutzoukas, Emanuel M and Van Etten, Emily J and Bharadwaj, Pradyumna K and others},
  journal={GeroScience},
  volume={45},
  number={5},
  pages={3079--3093},
  year={2023},
  publisher={Springer}
}

@article{takagi2018common,
  title={A common brain network among state, trait, and pathological anxiety from whole-brain functional connectivity},
  author={Takagi, Yu and Sakai, Yuki and Abe, Yoshinari and Nishida, Seiji and Harrison, Ben J and Mart{\'\i}nez-Zalaca{\'\i}n, Ignacio and Soriano-Mas, Carles and Narumoto, Jin and Tanaka, Saori C},
  journal={Neuroimage},
  volume={172},
  pages={506--516},
  year={2018},
  publisher={Elsevier}
}

@article{kim2021representation,
  title={Representation learning of resting state fMRI with variational autoencoder},
  author={Kim, Jung-Hoon and Zhang, Yizhen and Han, Kuan and Wen, Zheyu and Choi, Minkyu and Liu, Zhongming},
  journal={NeuroImage},
  volume={241},
  pages={118423},
  year={2021},
  publisher={Elsevier}
}

@article{han2019variational,
  title={Variational autoencoder: An unsupervised model for encoding and decoding fMRI activity in visual cortex},
  author={Han, Kuan and Wen, Haiguang and Shi, Junxing and Lu, Kun-Han and Zhang, Yizhen and Fu, Di and Liu, Zhongming},
  journal={NeuroImage},
  volume={198},
  pages={125--136},
  year={2019},
  publisher={Elsevier}
}

@article{qiang2021modeling,
  title={Modeling and augmenting of fMRI data using deep recurrent variational auto-encoder},
  author={Qiang, Ning and Dong, Qinglin and Liang, Hongtao and Ge, Bao and Zhang, Shu and Sun, Yifei and Zhang, Cheng and Zhang, Wei and Gao, Jie and Liu, Tianming},
  journal={Journal of neural engineering},
  volume={18},
  number={4},
  pages={0460b6},
  year={2021},
  publisher={IOP Publishing}
}

@inproceedings{waswani2017attention,
  title={Attention is all you need},
  author={Waswani, A and Shazeer, N and Parmar, N and Uszkoreit, J and Jones, L and Gomez, A and Kaiser, L and Polosukhin, I},
  booktitle={NIPS},
  year={2017}
}

@article{hofmann2008kernel,
  title={Kernel methods in machine learning},
  author={Hofmann, Thomas and Sch{\"o}lkopf, Bernhard and Smola, Alexander J},
  year={2008}
}

@book{spielberger1999measuring,
  title={Measuring anxiety and anger with the State-Trait Anxiety Inventory (STAI) and the State-Trait Anger Expression Inventory (STAXI).},
  author={Spielberger, Charles D and Sydeman, Sumner J and Owen, Ashley E and Marsh, Brian J},
  year={1999},
  publisher={Lawrence Erlbaum Associates Publishers}
}

@book{gauss_method_of_least_squares, 
    author = "Carl Friedrich Gauss", 
    title = "Theoria motus corporum coelestium in ellipsibus solaribus", 
    year = 1809, 
    publisher = "Perthes and Besser"
}

@article{kullback1951information,
    title = "Information Theory and Statistics",
    author = "S. Kullback and R. A. Leibler",
    journal = "The Annals of Mathematical Statistics",
    volume = 22,
    number = 1,
    pages = "79--86",
    year = 1951
}

@article{benjamini1995controlling,
    title = {Controlling the false discovery rate: A practical and powerful approach to multiple testing},
    author = {Yoav Benjamini and  Drai Hochberg},
    journal = {Journal of the Royal Statistical Society: Series B (Methodological)},
    volume = {57},
    number = {1},
    pages = {289-300},
    year = {1995}
}

@article{evans2013psychologists,
  title={Psychologists' perspectives on the diagnostic classification of mental disorders: results from the WHO-IUPsyS Global Survey},
  author={Evans, Spencer C and Reed, Geoffrey M and Roberts, Michael C and Esparza, Patricia and Watts, Ann D and Correia, Jo{\~a}o Mendon{\c{c}}a and Ritchie, Pierre and Maj, Mario and Saxena, Shekhar},
  journal={International Journal of Psychology},
  volume={48},
  number={3},
  pages={177--193},
  year={2013},
  publisher={Wiley Online Library}
}

@article{rao2023biotypes,
  title={Biotypes of Central Nervous System Complications in People Living With Human Immunodeficiency Virus (HIV): National Institute of Mental Health Perspectives on Advancing the Future of HIV Healthcare},
  author={Rao, Vasudev R and Brouwers, Pim and Joseph, Jeymohan and Lawhorn, Collene and Scott Sheldon, Lori AJ and Rausch, Dianne M},
  journal={The Journal of Infectious Diseases},
  volume={227},
  number={Supplement\_1},
  pages={S58--S61},
  year={2023},
  publisher={Oxford University Press}
}

@article{clementz2016identification,
  title={Identification of distinct psychosis biotypes using brain-based biomarkers},
  author={Clementz, Brett A and Sweeney, John A and Hamm, Jordan P and Ivleva, Elena I and Ethridge, Lauren E and Pearlson, Godfrey D and Keshavan, Matcheri S and Tamminga, Carol A},
  journal={American Journal of Psychiatry},
  volume={173},
  number={4},
  pages={373--384},
  year={2016},
  publisher={American Psychiatric Association Arlington, VA}
}

@article{Penninx2021Anxiety,
  author    = {Brenda W. J. H. Penninx and Daniel S. Pine and Emily A. Holmes and Andreas Reif},
  title     = {Anxiety disorders},
  journal   = {The Lancet},
  year      = {2021},
  volume    = {397},
  number    = {10277},
  pages     = {914--927},
  doi       = {10.1016/S0140-6736(21)00359-7},
  url       = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9248771/}
}

@article{langhammer2024resting,
  title={Resting-state functional connectivity in anxiety disorders: a multicenter fMRI study},
  author={Langhammer, Till and Hilbert, Kevin and Adolph, Dirk and Arolt, Volker and Bischoff, Sophie and B{\"o}hnlein, Joscha and Cwik, Jan C and Dannlowski, Udo and Deckert, J{\"u}rgen and Domschke, Katharina and others},
  journal={Molecular psychiatry},
  pages={1--10},
  year={2024},
  publisher={Nature Publishing Group UK London}
}

@article{van2021effects,
  title={Effects of unilateral tDCS over left prefrontal cortex on emotion regulation in depression: evidence from concurrent functional magnetic resonance imaging},
  author={van Dam, Wessel O and Chrysikou, Evangelia G},
  journal={Cognitive, Affective, \& Behavioral Neuroscience},
  volume={21},
  number={1},
  pages={14--34},
  year={2021},
  publisher={Springer}
}

@article{li2020spontaneous,
  title={The spontaneous activity and functional network of the occipital cortex is correlated with state anxiety in healthy adults},
  author={Li, Kun and Zhang, Meng and Zhang, Haisan and Li, Xianrui and Zou, Feng and Wang, Yufeng and Wu, Xin and Zhang, Hongxing},
  journal={Neuroscience Letters},
  volume={715},
  pages={134596},
  year={2020},
  publisher={Elsevier}
}

@article{seghier2013angular,
  title={The angular gyrus: multiple functions and multiple subdivisions},
  author={Seghier, Mohamed L},
  journal={The Neuroscientist},
  volume={19},
  number={1},
  pages={43--61},
  year={2013},
  publisher={Sage Publications Sage CA: Los Angeles, CA}
}

@article{de2020causal,
  title={A causal role for the right angular gyrus in self-location mediated perspective taking},
  author={De Boer, DML and Johnston, PJ and Kerr, G and Meinzer, M and Cleeremans, Axel},
  journal={Scientific reports},
  volume={10},
  number={1},
  pages={19229},
  year={2020},
  publisher={Nature Publishing Group UK London}
}

@article{Hu2022Efficacy,
  author    = {Yueqing Hu and Yu Jia and Ying Sun and Yan Ding and Zhaoyang Huang and Chunyan Liu and Yuping Wang},
  title     = {Efficacy and safety of simultaneous rTMS–tDCS over bilateral angular gyrus on neuropsychiatric symptoms in patients with moderate Alzheimer's disease: A prospective, randomized, sham-controlled pilot study},
  journal   = {Brain Stimulation},
  year      = {2022},
  volume    = {15},
  number    = {6},
  pages     = {1530--1537},
  doi       = {10.1016/j.brs.2022.11.009},
  url       = {https://pubmed.ncbi.nlm.nih.gov/36460293/}
}

@article{Yarkoni2011Neurosynth,
  author    = {Tal Yarkoni and Russell A. Poldrack and Thomas E. Nichols and David C. Van Essen and Tor D. Wager},
  title     = {Large-scale automated synthesis of human functional neuroimaging data},
  journal   = {Nature Methods},
  year      = {2011},
  volume    = {8},
  number    = {8},
  pages     = {665--670},
  doi       = {10.1038/nmeth.1635},
  url       = {https://www.nature.com/articles/nmeth.1635}
}

@article{Kingma2014Adam,
  title   = {Adam: A Method for Stochastic Optimization},
  author  = {Diederik P. Kingma and Jimmy Ba},
  journal = {Proceedings of the 3rd International Conference on Learning Representations (ICLR)},
  year    = {2014},
  url     = {https://arxiv.org/abs/1412.6980},
  eprint  = {1412.6980},
  archiveprefix = {arXiv},
  primaryclass = {cs.LG}
}


%% For the demographcis data
@article{kessler2008co,
  title={Co-morbid major depression and generalized anxiety disorders in the National Comorbidity Survey follow-up},
  author={Kessler, Ronald C and Gruber, Michael and Hettema, John M and Hwang, Irving and Sampson, Nancy and Yonkers, Kimberly A},
  journal={Psychological medicine},
  volume={38},
  number={3},
  pages={365--374},
  year={2008},
  publisher={Cambridge University Press}
}

@article{lamers2011comorbidity,
  title={Comorbidity patterns of anxiety and depressive disorders in a large cohort study: the Netherlands Study of Depression and Anxiety (NESDA)},
  author={Lamers, Femke and van Oppen, Patricia and Comijs, Hannie C and Smit, Johannes H and Spinhoven, Philip and van Balkom, Anton JLM and Nolen, Willem A and Zitman, Frans G and Beekman, Aartjan TF and Penninx, Brenda WJH},
  journal={Journal of clinical psychiatry},
  volume={72},
  number={3},
  pages={341},
  year={2011}
}

%% For the clinical signficant STAI
@article{corsaletti2014minimal,
  title={Minimal important difference for anxiety and depression surveys after intervention to increase daily physical activity in smokers},
  author={Corsaletti, Beatriz Fredegotto and Proen{\c{c}}a, Mahara-Daian Garcia Lemes and Bisca, Gianna Kelren Waldrich and Leite, J{\'e}ssica Cristina and Bellinetti, Laryssa Milenkovich and Pitta, F{\'a}bio},
  journal={Fisioterapia e Pesquisa},
  volume={21},
  number={4},
  pages={359--364},
  year={2014},
  publisher={SciELO Brasil}
}

@article{julian2011measures,
  title={Measures of anxiety},
  author={Julian, Laura J},
  journal={Arthritis care \& research},
  volume={63},
  number={0 11},
  pages={10--1002},
  year={2011}
}