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               Nikos Paragios},
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  bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{Pluim2003-nu,
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               Max A. Viergever},
  title     = {Mutual Information Based Registration of Medical Images: {A} Survey},
  journal   = {{IEEE} Trans. Medical Imaging},
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  number    = {8},
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  year      = {2003},
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}

@article{Maes1997-pg,
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  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@INPROCEEDINGS{Collignon1995-ri,
  title       = "Automated multi-modality image registration based on
                 information theory",
  booktitle   = "Information processing in medical imaging",
  author      = "Collignon, Andr{\'e} and Maes, Frederik and Delaere, Dominique
                 and Vandermeulen, Dirk and Suetens, Paul and Marchal, Guy",
  publisher   = "Citeseer",
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  pages       = "263--274",
  institution = "Citeseer",
  year        =  1995
}


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               Shin Nakajima and
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@article{Studholme1999-bu,
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@article{Modat2010-rg,
  author    = {Marc Modat and
               Gerard R. Ridgway and
               Zeike A. Taylor and
               Manja Lehmann and
               Josephine Barnes and
               David J. Hawkes and
               Nick C. Fox and
               S{\'{e}}bastien Ourselin},
  title     = {Fast free-form deformation using graphics processing units},
  journal   = {Comput. Methods Programs Biomed.},
  volume    = {98},
  number    = {3},
  pages     = {278--284},
  year      = {2010},
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  doi       = {10.1016/j.cmpb.2009.09.002},
  timestamp = {Thu, 20 Feb 2020 09:09:42 +0100},
  biburl    = {https://dblp.org/rec/journals/cmpb/ModatRTLBHFO10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@article{Thevenaz2000-hw,
  author    = {Philippe Th{\'{e}}venaz and
               Michael Unser},
  title     = {Optimization of mutual information for multiresolution image registration},
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  number    = {12},
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  bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{Rueckert1999-bn,
  author    = {Daniel Rueckert and
               Luke I. Sonoda and
               Carmel Hayes and
               Derek L. G. Hill and
               Martin O. Leach and
               David J. Hawkes},
  title     = {Non-rigid Registration Using Free-form Deformations: Application to
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  biburl    = {https://dblp.org/rec/journals/tmi/RueckertSHHLH99.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@article{Balakrishnan2018-qz,
  author    = {Guha Balakrishnan and
               Amy Zhao and
               Mert R. Sabuncu and
               John V. Guttag and
               Adrian V. Dalca},
  title     = {VoxelMorph: {A} Learning Framework for Deformable Medical Image Registration},
  journal   = {{IEEE} Trans. Medical Imaging},
  volume    = {38},
  number    = {8},
  pages     = {1788--1800},
  year      = {2019},
  url       = {https://doi.org/10.1109/TMI.2019.2897538},
  doi       = {10.1109/TMI.2019.2897538},
  timestamp = {Thu, 18 Jun 2020 22:10:02 +0200},
  biburl    = {https://dblp.org/rec/journals/tmi/BalakrishnanZSG19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

@article{De_Vos2019-ni,
  author    = {Bob D. de Vos and
               Floris F. Berendsen and
               Max A. Viergever and
               Hessam Sokooti and
               Marius Staring and
               Ivana Isgum},
  title     = {A deep learning framework for unsupervised affine and deformable image
               registration},
  journal   = {Medical Image Anal.},
  volume    = {52},
  pages     = {128--143},
  year      = {2019},
  url       = {https://doi.org/10.1016/j.media.2018.11.010},
  doi       = {10.1016/j.media.2018.11.010},
  timestamp = {Sat, 30 May 2020 19:56:08 +0200},
  biburl    = {https://dblp.org/rec/journals/mia/VosBVSSI19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@article{Haskins2019-kw,
  author    = {Grant Haskins and
               Uwe Kruger and
               Pingkun Yan},
  title     = {Deep learning in medical image registration: a survey},
  journal   = {Mach. Vis. Appl.},
  volume    = {31},
  number    = {1-2},
  pages     = {8},
  year      = {2020},
  url       = {https://doi.org/10.1007/s00138-020-01060-x},
  doi       = {10.1007/s00138-020-01060-x},
  timestamp = {Thu, 26 Mar 2020 09:42:21 +0100},
  biburl    = {https://dblp.org/rec/journals/mva/HaskinsKY20.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@inproceedings{Lee2019-be,
  author    = {Matthew C. H. Lee and
               Ozan Oktay and
               Andreas Schuh and
               Michiel Schaap and
               Ben Glocker},
  editor    = {Dinggang Shen and
               Tianming Liu and
               Terry M. Peters and
               Lawrence H. Staib and
               Caroline Essert and
               Sean Zhou and
               Pew{-}Thian Yap and
               Ali R. Khan},
  title     = {Image-and-Spatial Transformer Networks for Structure-Guided Image
               Registration},
  booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
               2019 - 22nd International Conference, Shenzhen, China, October 13-17,
               2019, Proceedings, Part {II}},
  series    = {Lecture Notes in Computer Science},
  volume    = {11765},
  pages     = {337--345},
  publisher = {Springer},
  year      = {2019},
  url       = {https://doi.org/10.1007/978-3-030-32245-8\_38},
  doi       = {10.1007/978-3-030-32245-8\_38},
  timestamp = {Fri, 06 Nov 2020 10:10:14 +0100},
  biburl    = {https://dblp.org/rec/conf/miccai/LeeOSSG19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@article{Rueckert2020-rl,
  author    = {Daniel Rueckert and
               Julia A. Schnabel},
  title     = {Model-Based and Data-Driven Strategies in Medical Image Computing},
  journal   = {Proc. {IEEE}},
  volume    = {108},
  number    = {1},
  pages     = {110--124},
  year      = {2020},
  url       = {https://doi.org/10.1109/JPROC.2019.2943836},
  doi       = {10.1109/JPROC.2019.2943836},
  timestamp = {Fri, 02 Oct 2020 14:42:31 +0200},
  biburl    = {https://dblp.org/rec/journals/pieee/RueckertS20.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@inproceedings{Jaderberg2015STN,
  author    = {Max Jaderberg and
               Karen Simonyan and
               Andrew Zisserman and
               Koray Kavukcuoglu},
  editor    = {Corinna Cortes and
               Neil D. Lawrence and
               Daniel D. Lee and
               Masashi Sugiyama and
               Roman Garnett},
  title     = {Spatial Transformer Networks},
  booktitle = {Advances in Neural Information Processing Systems 28: Annual Conference
               on Neural Information Processing Systems 2015, December 7-12, 2015,
               Montreal, Quebec, Canada},
  pages     = {2017--2025},
  year      = {2015},
  url       = {https://proceedings.neurips.cc/paper/2015/hash/33ceb07bf4eeb3da587e268d663aba1a-Abstract.html},
  timestamp = {Thu, 21 Jan 2021 15:15:22 +0100},
  biburl    = {https://dblp.org/rec/conf/nips/JaderbergSZK15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@inproceedings{Sokooti2017-ia,
  author    = {Hessam Sokooti and
               Bob D. de Vos and
               Floris F. Berendsen and
               Boudewijn P. F. Lelieveldt and
               Ivana Isgum and
               Marius Staring},
  editor    = {Maxime Descoteaux and
               Lena Maier{-}Hein and
               Alfred M. Franz and
               Pierre Jannin and
               D. Louis Collins and
               Simon Duchesne},
  title     = {Nonrigid Image Registration Using Multi-scale 3D Convolutional Neural
               Networks},
  booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
               2017 - 20th International Conference, Quebec City, QC, Canada, September
               11-13, 2017, Proceedings, Part {I}},
  series    = {Lecture Notes in Computer Science},
  volume    = {10433},
  pages     = {232--239},
  publisher = {Springer},
  year      = {2017},
  url       = {https://doi.org/10.1007/978-3-319-66182-7\_27},
  doi       = {10.1007/978-3-319-66182-7\_27},
  timestamp = {Tue, 14 May 2019 10:00:50 +0200},
  biburl    = {https://dblp.org/rec/conf/miccai/SokootiVBLIS17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

@article{Yang2017-qy,
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  biburl    = {https://dblp.org/rec/journals/neuroimage/YangKSN17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{Ashburner2007-vx,
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  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@article{Beg2005-jh,
  author    = {Mirza Faisal Beg and
               Michael I. Miller and
               Alain Trouv{\'{e}} and
               Laurent Younes},
  title     = {Computing Large Deformation Metric Mappings via Geodesic Flows of
               Diffeomorphisms},
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  bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{Arsigny2006-th,
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  title     = {A Log-Euclidean Framework for Statistics on Diffeomorphisms},
  booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
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               2006, Proceedings, Part {I}},
  series    = {Lecture Notes in Computer Science},
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  pages     = {924--931},
  publisher = {Springer},
  year      = {2006},
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  bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{Modat2012-xv,
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  pages     = {145--150},
  publisher = {{IEEE}},
  year      = {2012},
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  doi       = {10.1109/MMBIA.2012.6164745},
  timestamp = {Wed, 16 Oct 2019 14:14:55 +0200},
  biburl    = {https://dblp.org/rec/conf/mmbia/ModatDCORA12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
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@ARTICLE{Shafto2014-sc,
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@article{Taylor2017-rd,
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               Cam{-}CAN Group and
               Richard N. Henson},
  title     = {The Cambridge Centre for Ageing and Neuroscience (Cam-CAN) data repository:
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  journal   = {NeuroImage},
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@article{Ledig2015-zv,
  author    = {Christian Ledig and
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               Juan Carlos L{\'{o}}pez and
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  year      = {2015},
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  bibsource = {dblp computer science bibliography, https://dblp.org}
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@ARTICLE{Bai2018-yc,
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  year     =  2018,
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@inproceedings{Schuh2015-cd,
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               Antonios Makropoulos and
               Christian Ledig and
               Serena J. Counsell and
               Joseph V. Hajnal and
               Paul Aljabar and
               Daniel Rueckert},
  editor    = {Stanley Durrleman and
               Tom Fletcher and
               Guido Gerig and
               Marc Niethammer and
               Xavier Pennec},
  title     = {Construction of a 4D Brain Atlas and Growth Model Using Diffeomorphic
               Registration},
  booktitle = {Spatio-temporal Image Analysis for Longitudinal and Time-Series Image
               Data - Third International Workshop, {STIA} 2014, Held in Conjunction
               with {MICCAI} 2014, Boston, MA, USA, September 18, 2014, Revised Selected
               Papers},
  series    = {Lecture Notes in Computer Science},
  volume    = {8682},
  pages     = {27--37},
  publisher = {Springer},
  year      = {2014},
  url       = {https://doi.org/10.1007/978-3-319-14905-9_3},
  doi       = {10.1007/978-3-319-14905-9_3},
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  biburl    = {https://dblp.org/rec/conf/miccai/SchuhMMLCHAR14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{De_Vos2020-xg,
  author    = {Bob D. de Vos and
               Bas H. M. van der Velden and
               J{\"{o}}rg Sander and
               Kenneth G. A. Gilhuijs and
               Marius Staring and
               Ivana Isgum},
  editor    = {Ivana Isgum and
               Bennett A. Landman},
  title     = {Mutual information for unsupervised deep learning image registration},
  booktitle = {Medical Imaging 2020: Image Processing, Houston, TX, USA, February
               15-20, 2020},
  series    = {{SPIE} Proceedings},
  volume    = {11313},
  pages     = {113130R},
  publisher = {{SPIE}},
  year      = {2020},
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  timestamp = {Tue, 21 Jul 2020 15:32:21 +0200},
  biburl    = {https://dblp.org/rec/conf/miip/VosVSGSI20.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/cvpr/ArarGDBC20,
  author    = {Moab Arar and
               Yiftach Ginger and
               Dov Danon and
               Amit H. Bermano and
               Daniel Cohen{-}Or},
  title     = {Unsupervised Multi-Modal Image Registration via Geometry Preserving
               Image-to-Image Translation},
  booktitle = {2020 {IEEE/CVF} Conference on Computer Vision and Pattern Recognition,
               {CVPR} 2020, Seattle, WA, USA, June 13-19, 2020},
  pages     = {13407--13416},
  publisher = {{IEEE}},
  year      = {2020},
  url       = {https://doi.org/10.1109/CVPR42600.2020.01342},
  doi       = {10.1109/CVPR42600.2020.01342},
  timestamp = {Tue, 11 Aug 2020 16:59:49 +0200},
  biburl    = {https://dblp.org/rec/conf/cvpr/ArarGDBC20.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/corr/abs-2004-10282,
  author    = {Malte Hoffmann and
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               Juan Eugenio Iglesias and
               Bruce Fischl and
               Adrian V. Dalca},
  title     = {Learning Multi-Modal Image Registration without Real Data},
  journal   = {CoRR},
  volume    = {abs/2004.10282},
  year      = {2020},
  url       = {https://arxiv.org/abs/2004.10282},
  archivePrefix = {arXiv},
  eprint    = {2004.10282},
  timestamp = {Tue, 28 Apr 2020 16:10:02 +0200},
  biburl    = {https://dblp.org/rec/journals/corr/abs-2004-10282.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/ipmi/QinSLMRK19,
  author    = {Chen Qin and
               Bibo Shi and
               Rui Liao and
               Tommaso Mansi and
               Daniel Rueckert and
               Ali Kamen},
  editor    = {Albert C. S. Chung and
               James C. Gee and
               Paul A. Yushkevich and
               Siqi Bao},
  title     = {Unsupervised Deformable Registration for Multi-modal Images via Disentangled
               Representations},
  booktitle = {Information Processing in Medical Imaging - 26th International Conference,
               {IPMI} 2019, Hong Kong, China, June 2-7, 2019, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {11492},
  pages     = {249--261},
  publisher = {Springer},
  year      = {2019},
  url       = {https://doi.org/10.1007/978-3-030-20351-1_19},
  doi       = {10.1007/978-3-030-20351-1_19},
  timestamp = {Wed, 22 May 2019 11:32:48 +0200},
  biburl    = {https://dblp.org/rec/conf/ipmi/QinSLMRK19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/mia/HuMGLGBWBMEONBV18,
  author    = {Yipeng Hu and
               Marc Modat and
               Eli Gibson and
               Wenqi Li and
               Nooshin Ghavami and
               Ester Bonmati and
               Guotai Wang and
               Steven Bandula and
               Caroline M. Moore and
               Mark Emberton and
               S{\'{e}}bastien Ourselin and
               J. Alison Noble and
               Dean C. Barratt and
               Tom Vercauteren},
  title     = {Weakly-supervised convolutional neural networks for multimodal image
               registration},
  journal   = {Medical Image Anal.},
  volume    = {49},
  pages     = {1--13},
  year      = {2018},
  url       = {https://doi.org/10.1016/j.media.2018.07.002},
  doi       = {10.1016/j.media.2018.07.002},
  timestamp = {Mon, 24 Feb 2020 11:41:47 +0100},
  biburl    = {https://dblp.org/rec/journals/mia/HuMGLGBWBMEONBV18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@inproceedings{DBLP:conf/miccai/DalcaBGS18,
  author    = {Adrian V. Dalca and
               Guha Balakrishnan and
               John V. Guttag and
               Mert R. Sabuncu},
  editor    = {Alejandro F. Frangi and
               Julia A. Schnabel and
               Christos Davatzikos and
               Carlos Alberola{-}L{\'{o}}pez and
               Gabor Fichtinger},
  title     = {Unsupervised Learning for Fast Probabilistic Diffeomorphic Registration},
  booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
               2018 - 21st International Conference, Granada, Spain, September 16-20,
               2018, Proceedings, Part {I}},
  series    = {Lecture Notes in Computer Science},
  volume    = {11070},
  pages     = {729--738},
  publisher = {Springer},
  year      = {2018},
  url       = {https://doi.org/10.1007/978-3-030-00928-1_82},
  doi       = {10.1007/978-3-030-00928-1_82},
  timestamp = {Tue, 14 May 2019 10:00:49 +0200},
  biburl    = {https://dblp.org/rec/conf/miccai/DalcaBGS18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/miip/HeringH19,
  author    = {Alessa Hering and
               Stefan Heldmann},
  editor    = {Elsa D. Angelini and
               Bennett A. Landman},
  title     = {Unsupervised learning for large motion thoracic {CT} follow-up registration},
  booktitle = {Medical Imaging 2019: Image Processing, San Diego, California, United
               States, 16-21 February 2019},
  series    = {{SPIE} Proceedings},
  volume    = {10949},
  pages     = {109491B},
  publisher = {{SPIE}},
  year      = {2019},
  url       = {https://doi.org/10.1117/12.2506962},
  doi       = {10.1117/12.2506962},
  timestamp = {Wed, 17 Apr 2019 09:16:41 +0200},
  biburl    = {https://dblp.org/rec/conf/miip/HeringH19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/miip/RueckertCHH00,
  author    = {Daniel Rueckert and
               Matthew J. Clarkson and
               Derek L. G. Hill and
               David John Hawkes},
  editor    = {Kenneth M. Hanson},
  title     = {Non-rigid registration using higher-order mutual information},
  booktitle = {Medical Imaging 2000: Image Processing, San Diego, CA, United States,
               12-18 February 2000},
  series    = {{SPIE} Proceedings},
  volume    = {3979},
  publisher = {{SPIE}},
  year      = {2000},
  url       = {https://doi.org/10.1117/12.804801},
  doi       = {10.1117/12.804801},
  timestamp = {Sat, 05 Sep 2020 17:57:54 +0200},
  biburl    = {https://dblp.org/rec/conf/miip/RueckertCHH00.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}


@inproceedings{DBLP:conf/miccai/QiuQFHSR19,
  author    = {Huaqi Qiu and
               Chen Qin and
               Lo{\"{\i}}c Le Folgoc and
               Benjamin Hou and
               Jo Schlemper and
               Daniel Rueckert},
  editor    = {Mihaela Pop and
               Maxime Sermesant and
               Oscar Camara and
               Xiahai Zhuang and
               Shuo Li and
               Alistair A. Young and
               Tommaso Mansi and
               Avan Suinesiaputra},
  title     = {Deep Learning for Cardiac Motion Estimation: Supervised vs. Unsupervised
               Training},
  booktitle = {Statistical Atlases and Computational Models of the Heart. Multi-Sequence
               {CMR} Segmentation, CRT-EPiggy and {LV} Full Quantification Challenges
               - 10th International Workshop, {STACOM} 2019, Held in Conjunction
               with {MICCAI} 2019, Shenzhen, China, October 13, 2019, Revised Selected
               Papers},
  series    = {Lecture Notes in Computer Science},
  volume    = {12009},
  pages     = {186--194},
  publisher = {Springer},
  year      = {2019},
  url       = {https://doi.org/10.1007/978-3-030-39074-7_20},
  doi       = {10.1007/978-3-030-39074-7_20},
  timestamp = {Tue, 28 Jan 2020 09:01:27 +0100},
  biburl    = {https://dblp.org/rec/conf/miccai/QiuQFHSR19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}



@inproceedings{DBLP:conf/miccai/QinWCQBR20,
  author    = {Chen Qin and
               Shuo Wang and
               Chen Chen and
               Huaqi Qiu and
               Wenjia Bai and
               Daniel Rueckert},
  editor    = {Anne L. Martel and
               Purang Abolmaesumi and
               Danail Stoyanov and
               Diana Mateus and
               Maria A. Zuluaga and
               S. Kevin Zhou and
               Daniel Racoceanu and
               Leo Joskowicz},
  title     = {Biomechanics-Informed Neural Networks for Myocardial Motion Tracking
               in {MRI}},
  booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
               2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
               Proceedings, Part {III}},
  series    = {Lecture Notes in Computer Science},
  volume    = {12263},
  pages     = {296--306},
  publisher = {Springer},
  year      = {2020},
  url       = {https://doi.org/10.1007/978-3-030-59716-0_29},
  doi       = {10.1007/978-3-030-59716-0_29},
  timestamp = {Mon, 05 Oct 2020 18:46:13 +0200},
  biburl    = {https://dblp.org/rec/conf/miccai/QinWCQBR20.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/miccai/QinBSPPNR18,
  author    = {Chen Qin and
               Wenjia Bai and
               Jo Schlemper and
               Steffen E. Petersen and
               Stefan K. Piechnik and
               Stefan Neubauer and
               Daniel Rueckert},
  editor    = {Alejandro F. Frangi and
               Julia A. Schnabel and
               Christos Davatzikos and
               Carlos Alberola{-}L{\'{o}}pez and
               Gabor Fichtinger},
  title     = {Joint Learning of Motion Estimation and Segmentation for Cardiac {MR}
               Image Sequences},
  booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
               2018 - 21st International Conference, Granada, Spain, September 16-20,
               2018, Proceedings, Part {II}},
  series    = {Lecture Notes in Computer Science},
  volume    = {11071},
  pages     = {472--480},
  publisher = {Springer},
  year      = {2018},
  url       = {https://doi.org/10.1007/978-3-030-00934-2_53},
  doi       = {10.1007/978-3-030-00934-2_53},
  timestamp = {Tue, 14 May 2019 10:00:50 +0200},
  biburl    = {https://dblp.org/rec/conf/miccai/QinBSPPNR18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}