=== FINAL NETWORK VISUALIZATIONS ===

SCRIPTS (3 final versions):
1. neuroendocrine_covarnet_discovery_improved.R - Main analysis pipeline
2. create_network_visualizations.R - General network improvements
3. create_endocrine_analysis.R - Endocrine-focused analysis
4. create_endocrine_network_final.R - Final pastel tissue-annotated version

KEY NETWORK PDFS (keep these):
Original:
  • network_global_enhanced_v1.pdf - Original force-directed (user likes this)
  • network_global_enhanced_v2.pdf - Original circular layout

Improved Organization:
  • network_global_simplified.pdf - Major cell groups only
  • network_top_connected.pdf - Top 30 nodes
  • network_subgroups.pdf - Sub-networks by category
  • network_communities.pdf - Community detection

Endocrine-Focused (FINAL):
  • network_global_endocrine_focus.pdf - Global with endocrine strength
  • network_communities_annotated.pdf - Annotated communities
  • network_endocrine_tissue_pastel.pdf - FINAL pastel Kamada-Kawai layout
  • network_endocrine_tissue_pastel_v2.pdf - FINAL pastel FR layout

Module Analysis:
  • network_individual_modules_K12.pdf - Individual module networks

Archived intermediate versions in: archive_network_intermediate/
