# RAPTORGraph - Unified Requirements

## Development Tools
autopep8
pylint
pylance
GitPython

## Utilities
tqdm

## File Formats
h5py
pyjson5

## Scientific Computing
numpy
pandas
scipy

## Plotting
matplotlib
plotly

## Experiment Tracking
hydra-core
tensorboard
tensorboardX

## Metrics
torchmetrics
pytorch-ignite
pytorch_metric_learning


## Optimal Transport
POT

## Machine Learning
scikit-learn
umap-learn

## Deep Learning
torch
lightning
timm
einops

## scRNA-seq Analysis
scanpy