@article{Ribeiro2016LIME,
    title = {{"Why Should I Trust You?": Explaining the Predictions of Any Classifier}},
    year = {2016},
    author = {Ribeiro, Marco Tulio and Singh, Sameer and Guestrin, Carlos},
    month = {2},
    url = {https://arxiv.org/abs/1602.04938},
    arxivId = {1602.04938}
}

@misc{Litjens2018CAMELYON,
    title = {{1399 H{\&}E-stained sentinel lymph node sections of breast cancer patients: The CAMELYON dataset}},
    year = {2018},
    booktitle = {GigaScience},
    author = {Litjens, Geert and Bandi, Peter and Bejnordi, Babak Ehteshami and Geessink, Oscar and Balkenhol, Maschenka and Bult, Peter and Halilovic, Altuna and Hermsen, Meyke and van de Loo, Rob and Vogels, Rob and Manson, Quirine F and Stathonikos, Nikolas and Baidoshvili, Alexi and van Diest, Paul and Wauters, Carla and van Dijk, Marcory and van der Laak, Jeroen},
    number = {6},
    month = {6},
    volume = {7},
    url = {https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giy065/5026175},
    doi = {10.1093/gigascience/giy065},
    issn = {2047217X},
    keywords = {Breast cancer, Grand challenge, Lymph node metastases, Sentinel node, Whole-slide images}
}

@article{Cicek2016,
    title = {{3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation}},
    year = {2016},
    author = {{\c{C}}i{\c{c}}ek, Özgün and Abdulkadir, Ahmed and Lienkamp, Soeren S. and Brox, Thomas and Ronneberger, Olaf},
    month = {6},
    url = {https://arxiv.org/abs/1606.06650},
    arxivId = {1606.06650}
}

@inproceedings{Hendrycks2017,
    title = {{A baseline for detecting misclassified and out-of-distribution examples in neural networks}},
    year = {2017},
    booktitle = {International Conference on Learning Representations},
    author = {Hendrycks, Dan and Gimpel, Kevin},
    arxivId = {1610.02136}
}

@inproceedings{Cao2020-OoD-Benchmark,
    title = {{A Benchmark of Medical Out of Distribution Detection}},
    year = {2020},
    booktitle = {Uncertainty {\&} Robustness in Deep Learning workshop at ICML},
    author = {Cao, Tianshi and Huang, Chinwei and Hui, David Yu-Tung and Cohen, Joseph Paul},
    month = {7},
    url = {http://arxiv.org/abs/2007.04250},
    arxivId = {2007.04250}
}

@misc{Nair2020bst,
    title = {{A British Society of Thoracic Imaging statement: considerations in designing local imaging diagnostic algorithms for the COVID-19 pandemic}},
    year = {2020},
    booktitle = {Clinical Radiology},
    author = {Nair, A. and Rodrigues, J. C.L. and Hare, S. and Edey, A. and Devaraj, A. and Jacob, J. and Johnstone, A. and McStay, R. and Denton, Erika and Robinson, G.},
    number = {5},
    month = {5},
    pages = {329--334},
    volume = {75},
    publisher = {W.B. Saunders Ltd},
    doi = {10.1016/j.crad.2020.03.008},
    issn = {1365229X},
    pmid = {32265036}
}

@article{Arpit2017,
    title = {{A Closer Look at Memorization in Deep Networks}},
    year = {2017},
    author = {Arpit, Devansh and Jastrz˛, Stanisław and Ballas, Nicolas and Krueger, David and Bengio, Emmanuel and Kanwal, Maxinder S and Maharaj, Tegan and Fischer, Asja and Courville, Aaron and Bengio, Yoshua and Lacoste-Julien, Simon},
    url = {http://proceedings.mlr.press/v70/arpit17a/arpit17a.pdf}
}

@article{Cohen1960,
    title = {{A Coefficient of Agreement for Nominal Scales}},
    year = {1960},
    journal = {Educational and Psychological Measurement},
    author = {Cohen, Jacob},
    number = {1},
    month = {4},
    pages = {37--46},
    volume = {20},
    url = {http://journals.sagepub.com/doi/10.1177/001316446002000104},
    doi = {10.1177/001316446002000104},
    issn = {0013-1644}
}

@article{Leger2017,
    title = {{A comparative study of machine learning methods for time-to-event survival data for radiomics risk modelling}},
    year = {2017},
    journal = {Scientific Reports},
    author = {Leger, Stefan and Zwanenburg, Alex and Pilz, Karoline and Lohaus, Fabian and Linge, Annett and Z{\"{o}}phel, Klaus and Kotzerke, Jörg and Schreiber, Andreas and Tinhofer, Inge and Budach, Volker and Sak, Ali and Stuschke, Martin and Balermpas, Panagiotis and R{\"{o}}del, Claus and Ganswindt, Ute and Belka, Claus and Pigorsch, Steffi and Combs, Stephanie E. and M{\"{o}}nnich, David and Zips, Daniel and Krause, Mechthild and Baumann, Michael and Troost, Esther G. C. and L{\"{o}}ck, Steffen and Richter, Christian},
    number = {1},
    month = {12},
    pages = {13206},
    volume = {7},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/articles/s41598-017-13448-3},
    doi = {10.1038/s41598-017-13448-3},
    issn = {2045-2322},
    keywords = {Cancer imaging, Prognostic markers}
}

@article{Nasti2016,
    title = {{A Comparative Study on Web Data Extraction Approaches}},
    year = {2016},
    journal = {International Journal of Engineering Science and Computing},
    author = {Nasti, Samiah Jan and Asghar, M. and Butt, Muheet Ahmad},
    doi = {10.4010/2016.1322},
    keywords = {- language dependent, data extraction, dom trees, language independent, web, wrappers}
}

@article{Mikolajczyk2005,
    title = {{A comparison of affine region detectors}},
    year = {2005},
    journal = {International journal of computer vision},
    author = {Mikolajczyk, K. and Tuytelaars, T. and Schmid, C. and Zisserman, A. and Matas, J. and Schaffalitzky, F. and Kadir, T. and Gool, L.V.},
    number = {1},
    pages = {43–72},
    volume = {65}
}

@article{Liu2019,
    title = {{A comparison of deep learning performance against health-care professionals in detecting diseases from medical imaging: a systematic review and meta-analysis}},
    year = {2019},
    journal = {The Lancet Digital Health},
    author = {Liu, Xiaoxuan and Faes, Livia and Kale, Aditya U and Wagner, Siegfried K and Fu, Dun Jack and Bruynseels, Alice and Mahendiran, Thushika and Moraes, Gabriella and Shamdas, Mohith and Kern, Christoph and Ledsam, Joseph R and Schmid, Martin K and Balaskas, Konstantinos and Topol, Eric J and Bachmann, Lucas M and Keane, Pearse A and Denniston, Alastair K},
    doi = {10.1016/s2589-7500(19)30123-2},
    issn = {25897500}
}

@article{Wiebe2018,
    title = {{A Comparison of HLA Molecular Mismatch Methods to Determine HLA Immunogenicity}},
    year = {2018},
    journal = {Transplantation},
    author = {Wiebe, Chris and Kosmoliaptsis, Vasilis and Pochinco, Denish and Taylor, Craig J. and Nickerson, Peter},
    number = {8},
    month = {8},
    pages = {1338--1343},
    volume = {102},
    url = {http://insights.ovid.com/crossref?an=00007890-201808000-00030},
    doi = {10.1097/TP.0000000000002117},
    issn = {00411337}
}

@article{Wang2018,
    title = {{A Comparison of Word Embeddings for the Biomedical Natural Language Processing}},
    year = {2018},
    author = {Wang, Yanshan and Liu, Sijia and Afzal, Naveed and Rastegar-Mojarad, Majid and Wang, Liwei and Shen, Feichen and Kingsbury, Paul and Liu, Hongfang},
    url = {https://arxiv.org/pdf/1802.00400.pdf},
    arxivId = {arXiv:1802.00400v2},
    keywords = {Index Terms word embeddings, biomedical application, deep learning, natural language processing}
}

@article{Dong2013,
    title = {{A comprehensive review of earthquake-induced building damage detection with remote sensing techniques}},
    year = {2013},
    journal = {ISPRS Journal of Photogrammetry and Remote Sensing},
    author = {Dong, Laigen and Shan, Jie},
    pages = {85–99},
    volume = {84},
    url = {http://www.sciencedirect.com/science/article/pii/S0924271613001627}
}

@article{Zararsz2017,
    title = {{A comprehensive simulation study on classification of RNA-Seq data}},
    year = {2017},
    journal = {PLOS ONE},
    author = {Zararsız, Gökmen and Goksuluk, Dincer and Korkmaz, Selcuk and Eldem, Vahap and Zararsiz, Gozde Erturk and Duru, Izzet Parug and Ozturk, Ahmet},
    editor = {Sch{\"{o}}nbach, Christian},
    number = {8},
    month = {8},
    pages = {e0182507},
    volume = {12},
    publisher = {Public Library of Science},
    url = {http://dx.plos.org/10.1371/journal.pone.0182507},
    doi = {10.1371/journal.pone.0182507},
    issn = {1932-6203}
}

@article{Canny1986,
    title = {{A computational approach to edge detection}},
    year = {1986},
    journal = {Pattern Analysis and Machine Intelligence, IEEE Transactions on},
    author = {Canny, John},
    number = {6},
    pages = {679–698},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4767851 http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.420.3300&rep=rep1&type=pdf http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4767851&tag=1}
}

@article{Zhou2006,
    title = {{A computerized cellular imaging system for high content analysis in Monastrol suppressor screens.}},
    year = {2006},
    journal = {J Biomed Inform},
    author = {Zhou, X and Cao, X and Perlman, Z and Wong, S T},
    volume = {39},
    url = {http://dx.doi.org/10.1016/j.jbi.2005.05.008},
    doi = {10.1016/j.jbi.2005.05.008}
}

@techreport{Betancourt2018,
    title = {{A Conceptual Introduction to Hamiltonian Monte Carlo}},
    year = {2018},
    author = {Betancourt, Michael},
    url = {https://arxiv.org/pdf/1701.02434.pdf},
    arxivId = {1701.02434v2}
}

@inproceedings{Salkoff1980,
    title = {{A context-free grammar of French}},
    year = {1980},
    booktitle = {Proceedings of the 8th conference on Computational linguistics -},
    author = {Salkoff, Morris and {Morris}},
    publisher = {Association for Computational Linguistics},
    url = {http://portal.acm.org/citation.cfm?doid=990174.990182},
    doi = {10.3115/990174.990182}
}

@article{Porumb2020,
    title = {{A convolutional neural network approach to detect congestive heart failure}},
    year = {2020},
    journal = {Biomedical Signal Processing and Control},
    author = {Porumb, Mihaela and Iadanza, Ernesto and Massaro, Sebastiano and Pecchia, Leandro},
    publisher = {Elsevier},
    url = {https://www.sciencedirect.com/science/article/pii/S1746809419301776},
    doi = {10.1016/J.BSPC.2019.101597},
    issn = {1746-8094}
}

@article{Maguolo2020critic,
    title = {{A Critic Evaluation of Methods for COVID-19 Automatic Detection from X-Ray Images}},
    year = {2020},
    author = {Maguolo, Gianluca and Nanni, Loris},
    month = {4},
    url = {http://arxiv.org/abs/2004.12823},
    arxivId = {2004.12823}
}

@article{Staiger2012,
    title = {{A critical evaluation of network and pathway-based classifiers for outcome prediction in breast cancer}},
    year = {2012},
    journal = {PLoS ONE},
    author = {Staiger, Christine and Cadot, Sidney and Kooter, Raul and Dittrich, Marcus and M{\"{u}}ller, Tobias and Klau, Gunnar W. and Wessels, Lodewyk F.A.},
    number = {4},
    month = {4},
    volume = {7},
    doi = {10.1371/journal.pone.0034796},
    issn = {19326203}
}

@article{Danaee2016,
    title = {{A DEEP LEARNING APPROACH FOR CANCER DETECTION AND RELEVANT GENE IDENTIFICATION.}},
    year = {2016},
    journal = {Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing},
    author = {Danaee, Padideh and Ghaeini, Reza and Hendrix, David A},
    pages = {219--229},
    volume = {22},
    publisher = {NIH Public Access},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/27896977 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5177447},
    issn = {2335-6936},
    pmid = {27896977}
}

@article{Al-Kofahi2018,
    title = {{A deep learning-based algorithm for 2-D cell segmentation in microscopy images}},
    year = {2018},
    journal = {BMC Bioinformatics},
    author = {Al-Kofahi, Yousef and Zaltsman, Alla and Graves, Robert and Marshall, Will and Rusu, Mirabela},
    number = {1},
    month = {10},
    pages = {365},
    volume = {19},
    publisher = {BioMed Central Ltd.},
    url = {https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2375-z},
    doi = {10.1186/s12859-018-2375-z},
    issn = {14712105},
    keywords = {2-D cells segmentation, Deep learning, Microscopy images, Watershed segmentation}
}

@article{Krasner1988,
    title = {{A description of the model-view-controller user interface paradigm in the smalltalk-80 system}},
    year = {1988},
    journal = {Journal of Object Oriented Programming},
    author = {Krasner, G. E and Pope, S. T},
    number = {3},
    pages = {26–49},
    volume = {1},
    url = {http://www.itu.dk/courses/VOP/E2005/VOP2005E/8_mvc_krasner_and_pope.pdf}
}

@article{SinghWalia,
    title = {{A Dynamic Pipeline for Spatio-Temporal Fire Risk Predic-tion}},
    journal = {KDD},
    author = {Singh Walia, Bhavkaran and Hu, Qianyi and Chen, Jeffrey and Chen, Fangyan and Lee, Jessica and Kuo, Nathan and Narang, Palak and Jason Batts, Lt and Arnold, Geoffrey and Madaio, Michael},
    volume = {18},
    publisher = {ACM},
    url = {https://doi.org/10.1145/3219819.3219913},
    doi = {10.1145/3219819.3219913}
}

@phdthesis{OKMAN2013,
    title = {{A FAST SHAPE DETECTION APPROACH BY DIRECTIONAL INTEGRATIONS}},
    year = {2013},
    author = {OKMAN, OSMAN ERMAN},
    url = {http://etd.lib.metu.edu.tr/upload/12616464/index.pdf}
}

@article{Carreira-PerpnanEECS,
    title = {{A fast, universal algorithm to learn parametric nonlinear embeddings}},
    year = {2015},
    journal = {Nips},
    author = {Carreira-Perpinan, Miguel A. and Vladymyrov, Max},
    url = {http://papers.nips.cc/paper/5972-a-fast-universal-algorithm-to-learn-parametric-nonlinear-embeddings},
    issn = {10495258}
}

@article{Rodenacker2003,
    title = {{A feature set for cytometry on digitized microscopic images.}},
    year = {2003},
    journal = {Anal Cell Pathol},
    author = {Rodenacker, K and Bengtsson, E},
    volume = {25},
    url = {http://dx.doi.org/10.1155/2003/548678},
    doi = {10.1155/2003/548678}
}

@inproceedings{Baker2006,
    title = {{A fresh look at the reliability of long-term digital storage}},
    year = {2006},
    author = {Baker, Mary and Shah, Mehul and Rosenthal, David SH and Roussopoulos, Mema and Maniatis, Petros and Giuli, Thomas J. and Bungale, Prashanth},
    publisher = {ACM},
    url = {http://dl.acm.org/citation.cfm?id=1217957 http://arxiv.org/pdf/cs/0508130}
}

@inproceedings{Buttler2001,
    title = {{A fully automated object extraction system for the World Wide Web}},
    year = {2001},
    author = {Buttler, D. and Liu, L. and Pu, C.},
    pages = {361–370},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=918966}
}

@inproceedings{buttler_fully_2001,
    title = {{A fully automated object extraction system for the World Wide Web}},
    year = {2001},
    booktitle = {Distributed Computing Systems, 2001. 21st International Conference on.},
    author = {Buttler, D and Liu, L and Pu, C}
}

@article{Kiger2003,
    title = {{A functional genomic analysis of cell morphology using RNA interference.}},
    year = {2003},
    journal = {J Biol},
    author = {Kiger, A and Baum, B and Jones, S and Jones, M and Coulson, A and Echeverri, C and Perrimon, N},
    volume = {2},
    url = {http://dx.doi.org/10.1186/1475-4924-2-27},
    doi = {10.1186/1475-4924-2-27}
}

@article{Chung2015a,
    title = {{A General Framework for Multi-focal Image Classification and Authentication: Application to Microscope Pollen Images}},
    year = {2015},
    author = {Chung, François and Rodr{\'{i}}guez, Tomás},
    month = {3},
    url = {http://arxiv.org/abs/1503.05786},
    arxivId = {1503.05786},
    keywords = {generalized feature extraction, image classification, microscope images, optimal focus selection, pollen authentication, random forest, snake-based segmentation, supervised clustering}
}

@article{Papageorgiou1998,
    title = {{A general framework for object detection}},
    year = {1998},
    journal = {Center for Biological and Computational Learning Artificial Intelligence Laboratory},
    author = {Papageorgiou, C. P and Oren, M. and Poggio, T.}
}

@article{Needleman1970,
    title = {{A general method applicable to the search for similarities in the amino acid sequence of two proteins}},
    year = {1970},
    journal = {Journal of molecular biology},
    author = {Needleman, Saul B. and Wunsch, Christian D.},
    url = {http://www.sciencedirect.com/science/article/pii/0022283670900574 http://www.cise.ufl.edu/class/cis4930sp09rab/00052.pdf}
}

@article{Needleman1970b,
    title = {{A general method applicable to the search for similarities in the amino acid sequence of two proteins}},
    year = {1970},
    journal = {Journal of molecular biology},
    author = {Needleman, S.B. Saul B. and Wunsch, C.D. Christian D.},
    number = {3},
    pages = {443–453},
    volume = {48},
    url = {http://www.sciencedirect.com/science/article/pii/0022283670900574 http://www.cise.ufl.edu/class/cis4930sp09rab/00052.pdf}
}

@article{Jindal2010,
    title = {{A generalized tree matching algorithm considering nested lists for web data extraction}},
    year = {2010},
    journal = {The SIAM International Conference on Data Mining},
    author = {Jindal, Nitin and Liu, Bing},
    pages = {930--941},
    url = {https://siam.org/proceedings/datamining/2010/dm10_081_jindaln.pdf http://72.32.205.185/proceedings/datamining/2010/dm10_081_jindaln.pdf},
    isbn = {9781611972801},
    doi = {10.1137/1.9781611972801.81},
    keywords = {we data extraction, web mining}
}

@article{jindal_generalized_2010,
    title = {{A Generalized Tree Matching Algorithm Considering Nested Lists for Web Data Extraction}},
    year = {2010},
    author = {Jindal, N and Liu, B}
}

@article{jindal_generalized_2010b,
    title = {{A Generalized Tree Matching Algorithm Considering Nested Lists for Web Data Extraction}},
    year = {2010},
    journal = {The SIAM International Conference on Data Mining},
    author = {Jindal, Nitin and Liu, Bing},
    isbn = {9781611972801},
    doi = {10.1137/1.9781611972801.81},
    keywords = {we data extraction, web mining}
}

@article{jindal_generalized_2010c,
    title = {{A Generalized Tree Matching Algorithm Considering Nested Lists for Web Data Extraction}},
    year = {2010},
    author = {Jindal, N. and Liu, B.},
    url = {https://siam.org/proceedings/datamining/2010/dm10_081_jindaln.pdf}
}

@article{Fasel2005,
    title = {{A generative framework for real time object detection and classification}},
    year = {2005},
    journal = {Computer Vision and Image Understanding},
    author = {Fasel, I. and Fortenberry, B. and Movellan, J.},
    number = {1},
    pages = {182–210},
    volume = {98},
    url = {http://www.sciencedirect.com/science/article/pii/S1077314204001171}
}

@techreport{Yangb,
    title = {{A Graph Regularized Deep Neural Network for Unsupervised Image Representation Learning}},
    author = {Yang, Shijie and Li, Liang and Wang, Shuhui and Zhang, Weigang and Huang, Qingming},
    url = {http://openaccess.thecvf.com/content_cvpr_2017/papers/Yang_A_Graph_Regularized_CVPR_2017_paper.pdf}
}

@article{Keiningham2008,
    title = {{A holistic examination of Net Promoter}},
    year = {2008},
    journal = {Journal of Database Marketing {\&} Customer Strategy Management},
    author = {Keiningham, Timothy L and Aksoy, Lerzan and Cooil, Bruce and Andreassen, Tor Wallin and Williams, Luke},
    publisher = {Palgrave Macmillan UK},
    url = {http://link.springer.com/10.1057/dbm.2008.4},
    doi = {10.1057/dbm.2008.4},
    issn = {1741-2447}
}

@article{Gretton,
    title = {{A Kernel Method for the Two-Sample-Problem}},
    author = {Gretton, Arthur and Borgwardt, Karsten M and Rasch, Malte and Sch{\"{o}}lkopf, Bernhard and Smola, Alexander J},
    url = {https://papers.nips.cc/paper/3110-a-kernel-method-for-the-two-sample-problem.pdf}
}

@article{Simpson2019a,
    title = {{A large annotated medical image dataset for the development and evaluation of segmentation algorithms}},
    year = {2019},
    author = {Simpson, Amber L. and Antonelli, Michela and Bakas, Spyridon and Bilello, Michel and Farahani, Keyvan and van Ginneken, Bram and Kopp-Schneider, Annette and Landman, Bennett A. and Litjens, Geert and Menze, Bjoern and Ronneberger, Olaf and Summers, Ronald M. and Bilic, Patrick and Christ, Patrick F. and Do, Richard K. G. and Gollub, Marc and Golia-Pernicka, Jennifer and Heckers, Stephan H. and Jarnagin, William R. and McHugo, Maureen K. and Napel, Sandy and Vorontsov, Eugene and Maier-Hein, Lena and Cardoso, M. Jorge},
    month = {2},
    url = {http://arxiv.org/abs/1902.09063},
    arxivId = {1902.09063}
}

@article{Simpson_MSD_2019,
    title = {{A large annotated medical image dataset for the development and evaluation of segmentation algorithms}},
    year = {2019},
    author = {Simpson, Amber L. and Antonelli, Michela and Bakas, Spyridon and Bilello, Michel and Farahani, Keyvan and van Ginneken, Bram and Kopp-Schneider, Annette and Landman, Bennett A. and Litjens, Geert and Menze, Bjoern and Ronneberger, Olaf and Summers, Ronald M. and Bilic, Patrick and Christ, Patrick F. and Do, Richard K. G. and Gollub, Marc and Golia-Pernicka, Jennifer and Heckers, Stephan H. and Jarnagin, William R. and McHugo, Maureen K. and Napel, Sandy and Vorontsov, Eugene and Maier-Hein, Lena and Cardoso, M. Jorge},
    url = {http://arxiv.org/abs/1902.09063},
    arxivId = {1902.09063}
}

@incollection{Mundhenk2016,
    title = {{A Large Contextual Dataset for Classification, Detection and Counting of Cars with Deep Learning}},
    year = {2016},
    author = {Mundhenk, T. Nathan and Konjevod, Goran and Sakla, Wesam A. and Boakye, Kofi},
    publisher = {Springer International Publishing},
    url = {http://arxiv.org/abs/1609.04453},
    isbn = {9783319464879},
    doi = {10.1007/978-3-319-46487-9{\_}48},
    arxivId = {1609.04453},
    keywords = {automobile, cars, classification, cnn, context, counting, cowc, deep, detection, learning}
}

@article{Moffat2006,
    title = {{A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen.}},
    year = {2006},
    journal = {Cell},
    author = {Moffat, J and Grueneberg, D A and Yang, X and Kim, S Y and Kloepfer, A M and Hinkle, G and Piqani, B and Eisenhaure, T M and Luo, B and Grenier, J K},
    volume = {124},
    url = {http://dx.doi.org/10.1016/j.cell.2006.01.040},
    doi = {10.1016/j.cell.2006.01.040}
}

@article{Chang2004,
    title = {{A linear-time component-labeling algorithm using contour tracing technique}},
    year = {2004},
    journal = {Computer Vision and Image Understanding},
    author = {Chang, Fu and Chen, Chun-Jen and Lu, Chi-Jen},
    number = {2},
    pages = {206--220},
    volume = {93},
    url = {http://www.sciencedirect.com/science/article/pii/S1077314203001401 http://pdf.aminer.org/000/294/600/a_component_labeling_algorithm_using_contour_tracing_technique.pdf}
}

@article{PMID28155657,
    title = {{A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data.}},
    year = {2016},
    journal = {BMC genomics},
    author = {Hu, Yongli and Hase, Takeshi and Li, Hui Peng and Prabhakar, Shyam and Kitano, Hiroaki and Ng, See Kiong and Ghosh, Samik and Wee, Lawrence Jin Kiat},
    number = {Suppl 13},
    pages = {1025},
    volume = {17},
    publisher = {BioMed Central},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/28155657 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5260093},
    doi = {10.1186/s12864-016-3317-7},
    issn = {1471-2164},
    pmid = {28155657},
    keywords = {Machine learning, Network reconstruction, Single-cell RNA-seq, Systems biology}
}

@article{Chan,
    title = {{A machine learning approach to anomaly detection}},
    journal = {2003},
    author = {Chan, P. K and Mahoney, M. V and Arshad, M. H}
}

@article{Shannon1948,
    title = {{A mathematical theory of communication}},
    year = {1948},
    journal = {Bell System Technical Journal, The},
    author = {Shannon, C.E.},
    number = {3},
    month = {7},
    pages = {379--423},
    volume = {27},
    url = {http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6773024},
    doi = {10.1002/j.1538-7305.1948.tb01338.x},
    issn = {0005-8580}
}

@article{Rubner1998,
    title = {{A metric for distributions with applications to image databases}},
    year = {1998},
    journal = {International Conference on Computer Vision},
    author = {Rubner, Y and Tomasi, C and Guibas, L J},
    pages = {59--66},
    url = {https://users.cs.duke.edu/~tomasi/papers/rubner/rubnerIccv98.pdf},
    isbn = {81-7319-221-9},
    doi = {10.1109/ICCV.1998.710701},
    issn = {8173192219},
    keywords = {Application software, Computer displays, Computer science, Frequency, Geoscience, Histograms, Image databases, Image retrieval, Navigation, Psychology, color, distributions, easy-to-compute lower bounds, image colour analysis, image databases, image texture, linear optimization, multi-dimensional scaling displays, partial matching, texture, transportation problem, visual databases}
}

@article{Lebbe1987,
    title = {{A microcomputer-aided Method for Identification of Airborne Pollen Grains and Spores}},
    year = {1987},
    journal = {Grana},
    author = {Lebbe, J and Nilsson, S and Praglowski, J and Vignes, R and Hideux, M},
    number = {3},
    pages = {223--229},
    volume = {26},
    doi = {10.1080/00173138709428917},
    issn = {0017-3134}
}

@article{Shachor2019,
    title = {{A mixture of views network with applications to multi-view medical imaging}},
    year = {2019},
    journal = {Neurocomputing},
    author = {Shachor, Yaniv and Greenspan, Hayit and Goldberger, Jacob},
    month = {9},
    publisher = {Elsevier BV},
    doi = {10.1016/j.neucom.2019.09.027},
    issn = {09252312}
}

@article{shen2008mobile,
    title = {{A mobile phone system to find crosswalks for visually impaired pedestrians}},
    year = {2008},
    journal = {Technology and disability},
    author = {Shen, Huiying and Chan, Kee-Yip and Coughlan, James and Brabyn, John},
    number = {3},
    pages = {217--224},
    volume = {20},
    publisher = {IOS Press}
}

@article{Garippa2004,
    title = {{A multi-faceted approach to the advancement of cell-based drug discovery.}},
    year = {2004},
    journal = {Drug Discovery World},
    author = {Garippa, R J},
    volume = {6}
}

@article{Robertson2011,
    title = {{A multi-laboratory comparative study of spore trap analyses.}},
    year = {2011},
    journal = {Mycologia},
    author = {Robertson, L. D. and Brandys, Robert},
    number = {1},
    month = {1},
    pages = {226--231},
    volume = {103},
    url = {http://www.mycologia.org/cgi/doi/10.3852/10-017},
    doi = {10.3852/10-017},
    issn = {0027-5514},
    pmid = {20943546},
    keywords = {air-o-cell, allergenco d, cyclex-d}
}

@article{Vese2002,
    title = {{A multiphase level set framework for image segmentation using the Mumford and Shah model}},
    year = {2002},
    journal = {International journal of computer vision},
    author = {Vese, Luminita A. and Chan, Tony F.},
    number = {3},
    pages = {271–293},
    volume = {50},
    url = {http://link.springer.com/article/10.1023/A:1020874308076 http://mosaic.utia.cas.cz/}
}

@article{Pekel2014,
    title = {{A near real-time water surface detection method based on HSV transformation of MODIS multi-spectral time series data}},
    year = {2014},
    journal = {Remote Sensing of Environment},
    author = {Pekel, J. -F. and Vancutsem, C. and Bastin, L. and Clerici, M. and Vanbogaert, E. and Bartholom{\'{e}}, E. and Defourny, P.},
    month = {1},
    pages = {704--716},
    volume = {140},
    url = {http://www.sciencedirect.com/science/article/pii/S0034425713003763 http://www.sciencedirect.com/science/article/pii/S0034425713003763/pdfft?md5=6efd17e82bcdd40e35d4d961fa7137e8&pid=1-s2.0-S0034425713003763-main.pdf},
    doi = {10.1016/j.rse.2013.10.008},
    issn = {0034-4257}
}

@article{Boland2001,
    title = {{A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells.}},
    year = {2001},
    journal = {Bioinformatics},
    author = {Boland, M V and Murphy, R F},
    volume = {17},
    url = {http://dx.doi.org/10.1093/bioinformatics/17.12.1213},
    doi = {10.1093/bioinformatics/17.12.1213}
}

@article{Su2014,
    title = {{A Neural-Network-Based Approach to White Blood Cell Classification}},
    year = {2014},
    journal = {The Scientific World Journal},
    author = {Su, Mu-Chun and Cheng, Chun-Yen and Wang, Pa-Chun},
    pages = {796371},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/24672374 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3929189 https://www.hindawi.com/journals/tswj/2014/796371/},
    doi = {10.1155/2014/796371},
    issn = {1537-744X},
    pmid = {24672374}
}

@inproceedings{Gori2005,
    title = {{A new model for earning in graph domains}},
    year = {2005},
    booktitle = {International Joint Conference on Neural Networks},
    author = {Gori, Marco and Monfardini, Gabriele and Scarselli, Franco},
    isbn = {0780390482},
    doi = {10.1109/IJCNN.2005.1555942}
}

@article{Subramanian2017,
    title = {{A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles}},
    year = {2017},
    journal = {Cell},
    author = {Subramanian, Aravind and Narayan, Rajiv and Corsello, Steven M. and Peck, David D. and Natoli, Ted E. and Lu, Xiaodong and Gould, Joshua and Davis, John F. and Tubelli, Andrew A. and Asiedu, Jacob K. and Lahr, David L. and Hirschman, Jodi E. and Liu, Zihan and Donahue, Melanie and Julian, Bina and Khan, Mariya and Wadden, David and Smith, Ian C. and Lam, Daniel and Liberzon, Arthur and Toder, Courtney and Bagul, Mukta and Orzechowski, Marek and Enache, Oana M. and Piccioni, Federica and Johnson, Sarah A. and Lyons, Nicholas J. and Berger, Alice H. and Shamji, Alykhan F. and Brooks, Angela N. and Vrcic, Anita and Flynn, Corey and Rosains, Jacqueline and Takeda, David Y. and Hu, Roger and Davison, Desiree and Lamb, Justin and Ardlie, Kristin and Hogstrom, Larson and Greenside, Peyton and Gray, Nathanael S. and Clemons, Paul A. and Silver, Serena and Wu, Xiaoyun and Zhao, Wen-Ning and Read-Button, Willis and Wu, Xiaohua and Haggarty, Stephen J. and Ronco, Lucienne V. and Boehm, Jesse S. and Schreiber, Stuart L. and Doench, John G. and Bittker, Joshua A. and Root, David E. and Wong, Bang and Golub, Todd R.},
    number = {6},
    month = {11},
    pages = {1437--1452},
    volume = {171},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/29195078 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5990023 https://linkinghub.elsevier.com/retrieve/pii/S0092867417313090},
    doi = {10.1016/j.cell.2017.10.049},
    issn = {00928674},
    pmid = {29195078},
    keywords = {Functional genomics, chemical biology, gene expression profiling}
}

@article{Mallows1972,
    title = {{A Note on Asymptotic Joint Normality}},
    year = {1972},
    journal = {The Annals of Mathematical Statistics},
    author = {Mallows, C. L.},
    number = {2},
    month = {4},
    pages = {508--515},
    volume = {43},
    publisher = {Institute of Mathematical Statistics},
    url = {http://projecteuclid.org/euclid.aoms/1177692631},
    isbn = {0003-4851},
    doi = {10.1214/aoms/1177692631},
    issn = {0003-4851}
}

@article{Buettner2012,
    title = {{A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocyst}},
    year = {2012},
    journal = {Bioinformatics},
    author = {Buettner, F. and Theis, F. J.},
    month = {9},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/22962491},
    doi = {10.1093/bioinformatics/bts385},
    issn = {1367-4803},
    pmid = {22962491}
}

@article{Zou2019,
    title = {{A primer on deep learning in genomics}},
    year = {2019},
    journal = {Nature Genetics},
    author = {Zou, James and Huss, Mikael and Abid, Abubakar and Mohammadi, Pejman and Torkamani, Ali and Telenti, Amalio},
    number = {1},
    month = {1},
    pages = {12--18},
    volume = {51},
    publisher = {Nature Publishing Group},
    doi = {10.1038/s41588-018-0295-5},
    issn = {15461718},
    pmid = {30478442}
}

@inproceedings{Liu1996,
    title = {{A probabilistic approach to feature selection-a filter solution}},
    year = {1996},
    author = {Liu, Huan and Setiono, Rudy and {others}},
    pages = {319–327},
    volume = {96},
    publisher = {Citeseer},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.36.1270&rep=rep1&type=pdf}
}

@article{Sirmacek2011,
    title = {{A probabilistic framework to detect buildings in aerial and satellite images}},
    year = {2011},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Sirmacek, Beril and Unsalan, Cem},
    number = {1},
    pages = {211--221},
    volume = {49},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5523977 http://elib.dlr.de/64838/1/5523977.pdf http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5523977&abstractAccess=no&userType=inst}
}

@book{Neumann1980,
    title = {{A provably secure operating system: The system, its applications, and proofs}},
    shorttitle = {A provably secure operating system},
    year = {1980},
    author = {Neumann, P. and Boyer, R. S and Feiertag, R. J and Levitt, K. N and Robinson, L.},
    publisher = {SRI International},
    url = {http://www.csl.sri.com/~neumann/psos/psos80.ps}
}

@article{Allen2019,
    title = {{A Road Map for Translational Research on Artificial Intelligence in Medical Imaging: From the 2018 National Institutes of Health/RSNA/ACR/The Academy Workshop}},
    year = {2019},
    journal = {Journal of the American College of Radiology},
    author = {Allen, Bibb and Seltzer, Steven E. and Langlotz, Curtis P. and Dreyer, Keith P. and Summers, Ronald M. and Petrick, Nicholas and Marinac-Dabic, Danica and Cruz, Marisa and Alkasab, Tarik K. and Hanisch, Robert J. and Nilsen, Wendy J. and Burleson, Judy and Lyman, Kevin and Kandarpa, Krishna},
    month = {5},
    publisher = {Elsevier},
    url = {https://www.sciencedirect.com/science/article/pii/S1546144019304582},
    doi = {10.1016/J.JACR.2019.04.014},
    issn = {1546-1440}
}

@inproceedings{Forrest1996,
    title = {{A sense of self for unix processes}},
    year = {1996},
    author = {Forrest, S. and Hofmeyr, S. A and Somayaji, A. and Longstaff, T. A},
    pages = {120–128}
}

@article{Zhang1999,
    title = {{A simple statistical parameter for use in evaluation and validation of high throughput screening assays.}},
    year = {1999},
    journal = {J Biomol Screen},
    author = {Zhang, J H and Chung, T D and Oldenburg, K R},
    volume = {4},
    url = {http://dx.doi.org/10.1177/108705719900400206},
    doi = {10.1177/108705719900400206}
}

@article{Lee2018a,
    title = {{A Simple Unified Framework for Detecting Out-of-Distribution Samples and Adversarial Attacks}},
    year = {2018},
    author = {Lee, Kimin and Lee, Kibok and Lee, Honglak and Shin, Jinwoo},
    month = {7},
    url = {http://arxiv.org/abs/1807.03888},
    arxivId = {1807.03888}
}

@inproceedings{Yao2019op,
    title = {{A Strong Baseline for Domain Adaptation and Generalization in Medical Imaging}},
    year = {2019},
    booktitle = {Medical Imaging with Deep Learning Abstract},
    author = {Yao, Li and Prosky, Jordan and Covington, Ben and Lyman, Kevin},
    month = {4},
    url = {http://arxiv.org/abs/1904.01638},
    arxivId = {cs.CV/1904.01638}
}

@article{Solomon2012,
    title = {{A study of open access journals using article processing charges}},
    year = {2012},
    journal = {Journal of the American Society for Information Science and Technology},
    author = {Solomon, David J. and Bj{\"{o}}rk, Bo Christer},
    number = {8},
    month = {8},
    pages = {1485--1495},
    volume = {63},
    url = {http://doi.wiley.com/10.1002/asi.22673},
    doi = {10.1002/asi.22673},
    issn = {15322882},
    language = {en}
}

@article{Karras2018StyleGAN,
    title = {{A Style-Based Generator Architecture for Generative Adversarial Networks}},
    year = {2018},
    author = {Karras, Tero and Laine, Samuli and Aila, Timo},
    month = {12},
    url = {https://arxiv.org/abs/1812.04948},
    arxivId = {1812.04948}
}

@inproceedings{Tremblay-Gosselin2013,
    title = {{A supervised training and learning method for building identification in remotely sensed imaging}},
    year = {2013},
    author = {Tremblay-Gosselin, Jordan and Cretu, Ana-Maria},
    pages = {73–78},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6698421 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6698421&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6698421}
}

@article{Tuia2011a,
    title = {{A survey of active learning algorithms for supervised remote sensing image classification}},
    year = {2011},
    journal = {Selected Topics in Signal Processing, IEEE Journal of},
    author = {Tuia, Devis and Volpi, Michele and Copa, Loris and Kanevski, Mikhail and Munoz-Mari, Jordi},
    number = {3},
    pages = {606–617},
    volume = {5},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5742970 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5742970&abstractAccess=no&userType=inst}
}

@article{DSilva2008,
    title = {{A survey of automated techniques for formal software verification}},
    year = {2008},
    journal = {Computer-Aided Design of Integrated Circuits and Systems, IEEE Transactions on},
    author = {D'Silva, V. and Kroening, D. and Weissenbacher, G.},
    number = {7},
    pages = {1165–1178},
    volume = {27},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4544862&abstractAccess=no&userType=inst}
}

@misc{Silla2011,
    title = {{A survey of hierarchical classification across different application domains}},
    year = {2011},
    booktitle = {Data Mining and Knowledge Discovery},
    author = {Silla, Carlos N. and Freitas, Alex A.},
    number = {1-2},
    month = {1},
    pages = {31--72},
    volume = {22},
    publisher = {Springer},
    url = {https://link.springer.com/article/10.1007/s10618-010-0175-9},
    doi = {10.1007/s10618-010-0175-9},
    issn = {13845810},
    keywords = {DAG-structured class hierarchies, Hierarchical classification, Tree-structured class hierarchies}
}

@article{Bhadra2007,
    title = {{A survey of hybrid techniques for functional verification}},
    year = {2007},
    journal = {Design {\&} Test of Computers, IEEE},
    author = {Bhadra, J. and Abadir, M. S. and Wang, L. C. and Ray, S.},
    number = {2},
    pages = {112–122},
    volume = {24},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4237488&abstractAccess=no&userType=inst}
}

@techreport{Weiss2018,
    title = {{A Survey of Mobile Computing for the Visually Impaired}},
    year = {2018},
    author = {Weiss, Martin and Luck, Margaux and Girgis, Roger and Pal, Chris and Cohen, Joseph Paul},
    month = {11},
    url = {http://arxiv.org/abs/1811.10120},
    arxivId = {1811.10120}
}

@techreport{Zhang2010,
    title = {{A survey of recent advances in face detection}},
    year = {2010},
    author = {Zhang, Cha and Zhang, Zhengyou},
    url = {http://202.114.89.42/resource/pdf/6582.pdf},
    institution = {Tech. rep., Microsoft Research}
}

@article{Kayed2006,
    title = {{A survey of web information extraction systems}},
    year = {2006},
    journal = {IEEE Transactions on Knowledge and Data Engineering},
    author = {Kayed, M. and Kayed, M. and Girgis, M. R and Shaalan, K. F},
    number = {10},
    pages = {1411–1428},
    volume = {18}
}

@article{kayed_survey_2006,
    title = {{A survey of web information extraction systems}},
    year = {2006},
    journal = {IEEE Transactions on Knowledge and Data Engineering},
    author = {Kayed, M and Kayed, M and Girgis, M R and Shaalan, K F}
}

@article{Litjens2017,
    title = {{A Survey on Deep Learning in Medical Image Analysis}},
    year = {2017},
    journal = {Medical Image Analysis},
    author = {Litjens, Geert and Kooi, Thijs and Bejnordi, Babak Ehteshami and Setio, Arnaud Arindra Adiyoso and Ciompi, Francesco and Ghafoorian, Mohsen and van der Laak, Jeroen A. W. M. and van Ginneken, Bram and S{\'{a}}nchez, Clara I.},
    month = {2},
    url = {http://arxiv.org/abs/1702.05747},
    doi = {10.1016/j.media.2017.07.005},
    arxivId = {1702.05747}
}

@article{Pan2009,
    title = {{A Survey on Transfer Learning}},
    year = {2009},
    author = {Pan, Sinno Jialin and Fellow, Qiang Yang},
    url = {https://www.cse.ust.hk/~qyang/Docs/2009/tkde_transfer_learning.pdf},
    isbn = {9781509047888},
    doi = {10.1109/TKDE.2009.191},
    issn = {10414347},
    arxivId = {1808.01974}
}

@article{Corallo2014,
    title = {{A systematic review of medical practice variation in OECD countries}},
    year = {2014},
    journal = {Health Policy},
    author = {Corallo, Ashley N. and Croxford, Ruth and Goodman, David C. and Bryan, Elisabeth L. and Srivastava, Divya and Stukel, Therese A.},
    number = {1},
    month = {1},
    pages = {5--14},
    volume = {114},
    doi = {10.1016/j.healthpol.2013.08.002},
    issn = {01688510},
    keywords = {Diagnostic techniques and procedures, Health policy, OECD, Physician practice patterns, Small area analysis, Systematic review, Variations}
}

@article{Buda2017,
    title = {{A systematic study of the class imbalance problem in convolutional neural networks}},
    year = {2017},
    author = {Buda, Mateusz and Maki, Atsuto and Mazurowski, Maciej A.},
    month = {10},
    url = {http://arxiv.org/abs/1710.05381 http://dx.doi.org/10.1016/j.neunet.2018.07.011},
    doi = {10.1016/j.neunet.2018.07.011},
    arxivId = {1710.05381}
}

@article{Landwehr1994,
    title = {{A taxonomy of computer program security flaws}},
    year = {1994},
    journal = {ACM Computing Surveys (CSUR)},
    author = {Landwehr, C. E and Bull, A. R and McDermott, J. P and Choi, W. S},
    number = {3},
    pages = {211–254},
    volume = {26},
    url = {http://portal.acm.org/citation.cfm?id=185412}
}

@inproceedings{Valiant1984,
    title = {{A theory of the learnable}},
    year = {1984},
    booktitle = {Proceedings of the Annual ACM Symposium on Theory of Computing},
    author = {Valiant, L. G.},
    month = {12},
    pages = {436--445},
    publisher = {Association for Computing Machinery},
    isbn = {0897911334},
    doi = {10.1145/800057.808710},
    issn = {07378017}
}

@article{Newton1742,
    title = {{A True Copy of a Paper Found, in the Hand Writing of Sir Isaac Newton, among the Papers of the Late Dr. Halley, Containing a Description of an Instrument for Observing the Moon's Distance from the Fixt Stars at Sea}},
    year = {1742},
    journal = {Philosophical Transactions (1683-1775)},
    author = {Newton, Isaac and Halley, Dr.},
    month = {1},
    pages = {155--156},
    volume = {42},
    url = {http://www.jstor.org/stable/104162 http://www.jstor.org/stable/pdfplus/104162.pdf?acceptTC=true},
    issn = {0260-7085}
}

@article{Shankar1993,
    title = {{A tutorial on specification and verification using PVS}},
    year = {1993},
    author = {Shankar, N. and Pase, P. W. and Silverberg, B. A. and Rushby, R. J. and Von Henke, F. and Saxe, S. J. B. and Garl, S. J. and Guttag, J. V. and Shostak, S. R. E. and Schwartz, R. and {others}},
    url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.36.8235}
}

@article{VonLuxburg2007,
    title = {{A Tutorial on Spectral Clustering}},
    year = {2007},
    author = {Von Luxburg, Ulrike},
    url = {https://arxiv.org/pdf/0711.0189.pdf http://arxiv.org/abs/0711.0189},
    arxivId = {0711.0189},
    keywords = {graph Laplacian, spectral clustering}
}

@inproceedings{Owre1995,
    title = {{A tutorial on using PVS for hardware verification}},
    year = {1995},
    author = {Owre, S. and Rushby, J. and Shankar, N. and Srivas, M.},
    pages = {258–279},
    url = {http://www.emerald-ids.com/papers/tpcd94-tutorial/tpcd94-tutorial.pdf http://www.springerlink.com/content/7g126wt5104j2786/}
}

@article{Rahman2017,
    title = {{A Unified approach for Conventional Zero-shot, Generalized Zero-shot and Few-shot Learning}},
    year = {2017},
    journal = {IEEE Transactions on Image Processing},
    author = {Rahman, Shafin and Khan, Salman H. and Porikli, Fatih},
    number = {11},
    month = {6},
    pages = {5652--5667},
    volume = {27},
    publisher = {Institute of Electrical and Electronics Engineers Inc.},
    url = {http://arxiv.org/abs/1706.08653 http://dx.doi.org/10.1109/TIP.2018.2861573},
    doi = {10.1109/TIP.2018.2861573},
    arxivId = {1706.08653},
    keywords = {Zero-shot learning, class adaptive principal direction, few-shot learning, generalized zero-shot learning}
}

@article{Moreno-Torres2012,
    title = {{A unifying view on dataset shift in classification}},
    year = {2012},
    journal = {Pattern Recognition},
    author = {Moreno-Torres, Jose G. and Raeder, Troy and Alaiz-Rodr{\'{i}}guez, Rocío and Chawla, Nitesh V. and Herrera, Francisco},
    month = {1},
    publisher = {Pergamon},
    url = {https://www.sciencedirect.com/science/article/abs/pii/S0031320311002901?casa_token=NZ1sjKUINHAAAAAA:08iCUOacZoKrhrtKt-D_SsPRh6b9T7N1jk-1P4_UzH-2Z2Rcek9cVnuMhkRLExnXp-QGV9IyhYA},
    doi = {10.1016/J.PATCOG.2011.06.019},
    issn = {0031-3203}
}

@article{Poggi2016AWM,
    title = {{A wearable mobility aid for the visually impaired based on embedded 3D vision and deep learning}},
    year = {2016},
    journal = {2016 IEEE Symposium on Computers and Communication (ISCC)},
    author = {Poggi, Matteo and Mattoccia, Stefano},
    pages = {208--213}
}

@article{Farmer2005,
    title = {{A wrapper-based approach to image segmentation and classification}},
    year = {2005},
    journal = {Image Processing, IEEE Transactions on},
    author = {Farmer, Michael E. and Jain, Anil K.},
    number = {12},
    pages = {2060–2072},
    volume = {14},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1532306 http://cvl.ice.cycu.edu.tw/meeting/2006.11.23.pdf http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1532306&abstractAccess=no&userType=inst}
}

@article{Li1995,
    title = {{A year-round comparison of fungal spores in indoor and outdoor air}},
    year = {1995},
    journal = {Mycologia},
    author = {Li, Dw and Kendrick, Bryce},
    number = {2},
    pages = {190--195},
    volume = {87},
    url = {http://www.jstor.org/stable/3760904},
    issn = {00275514},
    keywords = {airborne fungi, indoor, outdoor, sea-}
}

@misc{Schmitt2014a,
    title = {{Academic Journals: The Most Profitable Obsolete Technology in History}},
    shorttitle = {Academic Journals},
    year = {2014},
    author = {Schmitt, Jason},
    month = {12},
    url = {http://www.huffingtonpost.com/jason-schmitt/academic-journals-the-mos_1_b_6368204.html}
}

@inproceedings{Cohen2014,
    title = {{Academic Torrents: A Community-Maintained Distributed Repository}},
    year = {2014},
    booktitle = {Annual Conference of the Extreme Science and Engineering Discovery Environment},
    author = {Cohen, Joseph Paul and Lo, Henry Z.},
    url = {http://doi.acm.org/10.1145/2616498.2616528},
    isbn = {978-1-4503-2893-7},
    doi = {10.1145/2616498.2616528}
}

@inproceedings{Lo2016,
    title = {{Academic Torrents: Scalable Data Distribution}},
    year = {2016},
    booktitle = {Neural Information Processing Systems Challenges in Machine Learning (CiML) workshop},
    author = {Lo, Henry Z. and Cohen, Joseph Paul},
    url = {http://arxiv.org/abs/1603.04395},
    arxivId = {1603.04395}
}

@incollection{Shitrit2017,
    title = {{Accelerated Magnetic Resonance Imaging by Adversarial Neural Network}},
    year = {2017},
    author = {Shitrit, Ohad and Riklin Raviv, Tammy},
    month = {9},
    pages = {30--38},
    publisher = {Springer, Cham},
    url = {http://link.springer.com/10.1007/978-3-319-67558-9_4},
    doi = {10.1007/978-3-319-67558-9{\_}4}
}

@techreport{ACR2018Appropriateness,
    title = {{ACR Appropriateness Criteria for Acute Respiratory Illness in Immunocompetent Patients}},
    year = {2018},
    author = {{ACR}},
    institution = {American College of Radiology}
}

@techreport{ACR2020COVIDImaging,
    title = {{ACR Recommendations for the use of Chest Radiography and Computed Tomography (CT) for Suspected COVID-19 Infection}},
    year = {2020},
    author = {{ACR}},
    url = {https://www.acr.org/Advocacy-and-Economics/ACR-Position-Statements/Recommendations-for-Chest-Radiography-and-CT-for-Suspected-COVID19-Infection},
    institution = {American College of Radiology}
}

@article{Kingma2014adam,
    title = {{Adam: A Method for Stochastic Optimization}},
    year = {2014},
    journal = {International Conference on Learning Representations},
    author = {Kingma, Diederik and Ba, Jimmy},
    url = {http://arxiv.org/abs/1412.6980},
    isbn = {9781450300728},
    doi = {10.1145/1830483.1830503},
    issn = {09252312},
    arxivId = {1412.6980}
}

@article{Graves2016,
    title = {{Adaptive Computation Time for Recurrent Neural Networks}},
    year = {2016},
    journal = {arXiv},
    author = {Graves, Alex},
    month = {3},
    url = {http://arxiv.org/abs/1603.08983},
    arxivId = {1603.08983}
}

@article{Srinivas1994,
    title = {{Adaptive Probabilities of Crossover and Mutation in Genetic Algorithms}},
    year = {1994},
    journal = {IEEE Transactions on Systems, Man and Cybernetics},
    author = {Srinivas, M. and Patnaik, L. M},
    number = {4},
    pages = {656--667},
    volume = {24},
    isbn = {1-4244-0067-8},
    doi = {10.1109/21.286385},
    issn = {21682909}
}

@article{Liu2012,
    title = {{Adaptive Selective Learning for automatic identification of sub-kilometer craters}},
    year = {2012},
    journal = {Neurocomputing},
    author = {Liu, Siyi and Ding, Wei and Gao, Feng and Stepinski, Tomasz F.},
    month = {9},
    pages = {78--87},
    volume = {92},
    url = {http://pdn.sciencedirect.com/science?_ob=MiamiImageURL&_cid=271597&_user=1516297&_pii=S0925231212000860&_check=y&_origin=article&_zone=toolbar&_coverDate=01-Sep-2012&view=c&originContentFamily=serial&wchp=dGLzVlt-zSkzk&md5=a1ebc08f6b06cca6458bf75a9db1f75c},
    issn = {0925-2312}
}

@article{Duchi2011,
    title = {{Adaptive Subgradient Methods for Online Learning and Stochastic Optimization}},
    year = {2011},
    journal = {Journal of Machine Learning Research},
    author = {Duchi, John and Hazan, Elad and Singer, Yoram},
    url = {http://dl.acm.org/citation.cfm?id=2021068 http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.232.1303&rep=rep1&type=pdf#page=265 http://jmlr.org/papers/v12/duchi11a.html},
    isbn = {9780982252925},
    doi = {10.1109/CDC.2012.6426698},
    issn = {15324435},
    arxivId = {arXiv:1103.4296v1},
    keywords = {adaptivity, online learning, stochastic convex optimization, subgradient methods}
}

@article{Gregg2006,
    title = {{Adaptive web information extraction}},
    year = {2006},
    journal = {Communications of the ACM},
    author = {Gregg, D. G and Walczak, S.},
    number = {5},
    pages = {78–84},
    volume = {49}
}

@article{gregg_adaptive_2006,
    title = {{Adaptive web information extraction}},
    year = {2006},
    journal = {Communications of the ACM},
    author = {Gregg, D G and Walczak, S}
}

@article{Okhmatovskaia2014,
    title = {{Addressing the Challenge of Encoding Causal Epidemiological Knowledge in Formal Ontologies: A Practical Perspective. Malaria Analytics View project Surveillance of Adverse Childhood Experiences (ACEs): A Knowledge-based Approach View project}},
    year = {2014},
    author = {Okhmatovskaia, Anya and Shaban-Nejad, Arash and Lavigne, Maxime and Buckeridge, David L},
    doi = {10.3233/978-1-61499-432-9-1125}
}

@article{Brown2012,
    title = {{ADHD-200 Global Competition: diagnosing ADHD using personal characteristic data can outperform resting state fMRI measurements}},
    year = {2012},
    journal = {Frontiers in Systems Neuroscience},
    author = {Brown, Matthew R. G. and Sidhu, Gagan S. and Greiner, Russell and Asgarian, Nasimeh and Bastani, Meysam and Silverstone, Peter H. and Greenshaw, Andrew J. and Dursun, Serdar M.},
    number = {SEPTEMBER},
    month = {9},
    pages = {1--22},
    volume = {6},
    publisher = {Frontiers},
    url = {http://journal.frontiersin.org/article/10.3389/fnsys.2012.00069/abstract},
    doi = {10.3389/fnsys.2012.00069},
    issn = {1662-5137},
    keywords = {ADHD, Children, Classifier, Diagnosis, Functional connectivity, ICA, Machine learning, Multivoxel pattern analysis}
}

@article{Galarraga2012,
    title = {{Adiposoft: automated software for the analysis of white adipose tissue cellularity in histological sections.}},
    year = {2012},
    journal = {Journal of lipid research},
    author = {Galarraga, Miguel and Campi{\'{o}}n, Javier and Mu{\~{n}}oz-Barrutia, Arrate and Boqu{\'{e}}, Noemí and Moreno, Haritz and Mart{\'{i}}nez, José Alfredo and Milagro, Fermín and Ortiz-de-Sol{\'{o}}rzano, Carlos},
    number = {12},
    month = {12},
    pages = {2791--6},
    volume = {53},
    publisher = {American Society for Biochemistry and Molecular Biology},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/22993232 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3494244},
    doi = {10.1194/jlr.D023788},
    issn = {1539-7262},
    pmid = {22993232}
}

@misc{Parameswaran,
    title = {{Aditya Ganesh Parameswaran}},
    author = {Parameswaran, Aditya},
    url = {http://www-cs-students.stanford.edu/~adityagp/index.html}
}

@misc{parameswaran_aditya_,
    title = {{Aditya Ganesh Parameswaran}},
    author = {Parameswaran, Aditya},
    url = {http://www-cs-students.stanford.edu/~adityagp/index.html}
}

@book{Coplien1992,
    title = {{Advanced C++ programming styles and idioms}},
    year = {1992},
    author = {Coplien, J. O and {others}},
    volume = {41},
    publisher = {Addison-Wesley},
    url = {http://www.computer.org/comp/proceedings/tools/1997/8485/00/84850352.pdf}
}

@book{phibbs2006advanced1,
    title = {{Advanced ECG: boards and beyond}},
    year = {2006},
    author = {Phibbs, Brendan},
    publisher = {Elsevier Health Sciences}
}

@article{Price2002,
    title = {{Advances in molecular labeling, high throughput imaging and machine intelligence portend powerful functional cellular biochemistry tools.}},
    year = {2002},
    journal = {J Cell Biochem},
    author = {Price, J H and Goodacre, A and Hahn, K and Hodgson, L and Hunter, E A and Krajewski, S and Murphy, R F and Rabinovich, A and Reed, J C and Heynen, S},
    volume = {39},
    url = {http://dx.doi.org/10.1002/jcb.10448},
    doi = {10.1002/jcb.10448}
}

@article{Zhu,
    title = {{Adversarial Deep Structural Networks for Mammographic Mass Segmentation}},
    author = {Zhu, Wentao and Xiang, Xiang and Tran, Trac D and Xie, Xiaohui},
    url = {https://arxiv.org/pdf/1612.05970.pdf},
    keywords = {Adversarial deep structure networks, adversarial fully convolutional network, adversarial training, segmentation}
}

@inproceedings{Zhu2018_2,
    title = {{Adversarial Deep Structured Nets for Mass Segmentation from Mammograms}},
    year = {2018},
    booktitle = {International Symposium on Biomedical Imaging (ISBI)},
    author = {Zhu, Wentao and Xiang, Xiang and Tran, Trac D. and Hager, Gregory D. and Xie, Xiaohui},
    url = {http://arxiv.org/abs/1710.09288},
    doi = {10.1101/095786},
    arxivId = {1710.09288}
}

@misc{Wang2020LatentStyle,
    title = {{Adversarial Defense by Latent Style Transformations}},
    year = {2020},
    author = {Wang, Shuo and Nepal, Surya and Grobler, Marthie and Rudolph, Carsten and Chen, Tianle and Chen, Shangyu},
    url = {https://arxiv.org/abs/2006.09701},
    arxivId = {2006.09701}
}

@article{Tzenga2017,
    title = {{Adversarial Discriminative Domain Adaptation}},
    year = {2017},
    author = {Tzeng, Eric and Hoffman, Judy and Saenko, Kate and Darrell, Trevor},
    url = {https://arxiv.org/pdf/1702.05464.pdf}
}

@inproceedings{Donahue2017a,
    title = {{Adversarial Feature Learning}},
    year = {2017},
    booktitle = {International Conference on Learning Representations (ICLR)},
    author = {Donahue, Jeff and Kr{\"{a}}henb{\"{u}}hl, Philipp and Darrell, Trevor},
    url = {http://arxiv.org/abs/1605.09782},
    arxivId = {1605.09782}
}

@inproceedings{Chartsias2017,
    title = {{Adversarial Image Synthesis for Unpaired Multi-modal Cardiac Data}},
    year = {2017},
    booktitle = {Workshop on Simulation and Synthesis in Medical Imaging},
    author = {Chartsias, Agisilaos and Joyce, Thomas and Dharmakumar, Rohan and Tsaftaris, Sotirios A.},
    url = {http://link.springer.com/10.1007/978-3-319-68127-6_1},
    doi = {10.1007/978-3-319-68127-6{\_}1}
}

@article{Kohl2017,
    title = {{Adversarial Networks for the Detection of Aggressive Prostate Cancer}},
    year = {2017},
    author = {Kohl, Simon and Bonekamp, David and Schlemmer, Heinz-Peter and Yaqubi, Kaneschka and Hohenfellner, Markus and Hadaschik, Boris and Radtke, Jan-Philipp and Maier-Hein, Klaus and De, Simon Kohl@dkfz},
    month = {2},
    url = {http://arxiv.org/abs/1702.08014},
    arxivId = {1702.08014},
    keywords = {Adversarial Networks, FCN, Prostate Tumor Detection, Semantic Segmentation, Small Datasets}
}

@inproceedings{Huo2017,
    title = {{Adversarial Synthesis Learning Enables Segmentation Without Target Modality Ground Truth}},
    year = {2017},
    booktitle = {International Symposium on Biomedical Imaging (ISBI)},
    author = {Huo, Yuankai and Xu, Zhoubing and Bao, Shunxing and Assad, Albert and Abramson, Richard G. and Landman, Bennett A.},
    month = {12},
    url = {http://arxiv.org/abs/1712.07695},
    arxivId = {1712.07695}
}

@article{Chapfuwa2018,
    title = {{Adversarial Time-to-Event Modeling}},
    year = {2018},
    author = {Chapfuwa, Paidamoyo and Tao, Chenyang and Li, Chunyuan and Page, Courtney and Goldstein, Benjamin and Carin, Lawrence and Henao, Ricardo},
    url = {http://arxiv.org/abs/1804.03184},
    issn = {1938-7228},
    arxivId = {1804.03184}
}

@article{Moeskops2017,
    title = {{Adversarial training and dilated convolutions for brain MRI segmentation}},
    year = {2017},
    author = {Moeskops, Pim and Veta, Mitko and Lafarge, Maxime W. and Eppenhof, Koen A. J. and Pluim, Josien P. W.},
    month = {7},
    url = {http://arxiv.org/abs/1707.03195},
    arxivId = {1707.03195}
}

@inproceedings{Zenati2018b,
    title = {{Adversarially Learned Anomaly Detection}},
    year = {2018},
    booktitle = {International Conference on Data Mining},
    author = {Zenati, Houssam and Romain, Manon and Foo, Chuan-Sheng and Lecouat, Bruno and Chandrasekhar, Vijay},
    url = {https://arxiv.org/abs/1812.02288},
    arxivId = {1812.02288},
    keywords = {Anomaly Detection, Deep Learning, Generative Adversarial Networks, Novelty Detection, Unsupervised Learning}
}

@article{Dumoulin2016,
    title = {{Adversarially Learned Inference}},
    year = {2016},
    journal = {International Conference on Learning Representations},
    author = {Dumoulin, Vincent and Belghazi, Ishmael and Poole, Ben and Mastropietro, Olivier and Lamb, Alex and Arjovsky, Martin and Courville, Aaron},
    url = {http://arxiv.org/abs/1606.00704},
    arxivId = {1606.00704}
}

@inproceedings{Avgerinos2011,
    title = {{AEG: Automatic exploit generation}},
    shorttitle = {AEG},
    year = {2011},
    author = {Avgerinos, T. and Cha, S. K and Hao, B. L.T and Brumley, D.}
}

@article{Kasprzyk2008,
    title = {{Aeromycology - Main research fields of interest during the last 25 years}},
    year = {2008},
    journal = {Annals of Agricultural and Environmental Medicine},
    author = {Kasprzyk, Idalia},
    number = {1},
    pages = {1--7},
    volume = {15},
    isbn = {1232-1966},
    doi = {10.1213/ANE.0b013e3182120ca5},
    issn = {12321966},
    pmid = {21519053},
    keywords = {Aeromycology, Allergy, Bioaerosol, Fungal spores, Fungi, Indoor fungal spores, Outdoor fungal spores, Seasonal variation}
}

@article{Adhikari2009,
    title = {{Aerosolization of fungi, (1--{\&}gt;3)-beta-D glucan, and endotoxin from flood-affected materials collected in New Orleans homes.}},
    year = {2009},
    journal = {Environmental research},
    author = {Adhikari, Atin and Jung, Jaehee and Reponen, Tiina and Lewis, Jocelyn Suzanne and DeGrasse, Enjoli C and Grimsley, L Faye and Chew, Ginger L and Grinshpun, Sergey A},
    number = {3},
    month = {4},
    pages = {215--24},
    volume = {109},
    publisher = {NIH Public Access},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/19201399 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4401425},
    doi = {10.1016/j.envres.2008.12.010},
    issn = {1096-0953},
    pmid = {19201399}
}

@misc{Strickland2020,
    title = {{AI Can Help Hospitals Triage COVID-19 Patients}},
    year = {2020},
    booktitle = {IEEE Spectrum},
    author = {Strickland, Eliza},
    url = {https://spectrum.ieee.org/the-human-os/artificial-intelligence/medical-ai/ai-can-help-hospitals-triage-covid19-patients}
}

@article{DeGrave2020shortcut,
    title = {{AI for radiographic COVID-19 detection selects shortcuts over signal}},
    year = {2020},
    journal = {medRxiv},
    author = {DeGrave, Alex J and Janizek, Joseph D and Lee, Su-In},
    month = {1},
    pages = {2020.09.13.20193565},
    url = {http://medrxiv.org/content/early/2020/09/14/2020.09.13.20193565.abstract},
    doi = {10.1101/2020.09.13.20193565}
}

@article{DeGrave2020COVIDShortcut,
    title = {{AI for radiographic COVID-19 detection selects shortcuts over signal.}},
    year = {2020},
    journal = {medRxiv : the preprint server for health sciences},
    author = {DeGrave, Alex J and Janizek, Joseph D and Lee, Su-In},
    month = {9},
    pages = {2020.09.13.20193565},
    publisher = {Cold Spring Harbor Laboratory Press},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/32995822 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC7523163},
    doi = {10.1101/2020.09.13.20193565},
    pmid = {32995822}
}

@article{Hao2020MITReview,
    title = {{AI is helping triage coronavirus patients. The tools may be here to stay.}},
    year = {2020},
    journal = {MIT Technology Review},
    author = {Hao, Karen},
    url = {https://www.technologyreview.com/2020/04/23/1000410/ai-triage-covid-19-patients-health-care/}
}

@misc{Ross2020,
    title = {{AI used to predict Covid-19 patients' decline before proven to work}},
    year = {2020},
    booktitle = {STAT},
    author = {Ross, Casey},
    url = {https://www.statnews.com/2020/04/24/coronavirus-hospitals-use-ai-to-predict-patient-decline-before-knowing-it-works/}
}

@article{MacIntosh2006,
    title = {{Airborne fungal spores in a cross-sectional study of office buildings}},
    year = {2006},
    journal = {Journal of occupational and environmental hygiene},
    author = {MacIntosh, David L and Brightman, Howard S and Baker, Brian J and Myatt, Theodore a and Stewart, James H and McCarthy, John F},
    number = {7},
    pages = {379--389},
    volume = {3},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/16835164},
    isbn = {1545-9624 (Print){\textbackslash}r1545-9624 (Linking)},
    doi = {10.1080/10543400600760438},
    issn = {1545-9624; 1545-9624},
    pmid = {16835164},
    keywords = {Air Microbiology, Air Pollutants, Air Pollution, Cross-Sectional Studies, Environmental Monitoring, Facility Design and Construction, Fungal, Fungal/isolation {\&} purification, Fungal: isolation {\&} purification, Indoor, Indoor/analysis, Indoor: analysis, Occupational, Occupational Exposure, Occupational/analysis, Occupational: analysis, Seasons, Sick Building Syndrome, Spores, United States}
}

@article{Jothish2004,
    title = {{Airborne fungal spores in a sawmill environment in Palakkad District, Kerala, India}},
    year = {2004},
    journal = {Aerobiologia},
    author = {Jothish, Padmanabhan S. and Nayar, Themath Soman},
    number = {1},
    pages = {75--81},
    volume = {20},
    doi = {10.1023/B:AERO.0000022981.70984.b7},
    issn = {03935965},
    keywords = {Airspora, Fungal spores, India, Palakkad in Kerala, Sawmill}
}

@article{Vittal1985,
    title = {{Airborne Fungus Spores of a Library in India}},
    year = {1985},
    journal = {Grana},
    author = {Vittal, B P R and Glory, A Leela},
    number = {2},
    pages = {129--132},
    volume = {24},
    url = {http://www.tandfonline.com/doi/abs/10.1080/00173138509429925},
    isbn = {0017-3134},
    doi = {10.1080/00173138509429925},
    issn = {16512049}
}

@misc{Wahlby2003,
    title = {{Algorithms for Applied Digital Image Cytometry.}},
    year = {2003},
    author = {Wahlby, C},
    publisher = {Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology},
    address = {Uppsala}
}

@inproceedings{Zongker1996,
    title = {{Algorithms for feature selection: An evaluation}},
    shorttitle = {Algorithms for feature selection},
    year = {1996},
    author = {Zongker, D. and Jain, A.},
    pages = {18–22},
    volume = {2},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=546716}
}

@incollection{Roelfsema1999,
    title = {{Algorithms for the detection of connectedness and their neural implementation}},
    year = {1999},
    booktitle = {Neuronal Information Processing: From Biological Data to Modelling and Applications},
    author = {Roelfsema, Pieter R and Bohte, Sander and Spekreijse, Henk},
    month = {5},
    pages = {1--23},
    url = {http://www.worldscientific.com/doi/abs/10.1142/9789812818041_0004},
    doi = {10.1142/9789812818041{\_}0004}
}

@inproceedings{Cooper2000,
    title = {{Alice: a 3-D tool for introductory programming concepts}},
    shorttitle = {Alice},
    year = {2000},
    author = {Cooper, S. and Dann, W. and Pausch, R.},
    pages = {107–116},
    volume = {15},
    url = {http://dl.acm.org/citation.cfm?id=364161 http://www.stanford.edu/~coopers/alice/ccscne00.PDF}
}

@article{PMID28974235,
    title = {{Alignment-free sequence comparison: benefits, applications, and tools.}},
    year = {2017},
    journal = {Genome biology},
    author = {Zielezinski, Andrzej and Vinga, Susana and Almeida, Jonas and Karlowski, Wojciech M},
    number = {1},
    pages = {186},
    volume = {18},
    publisher = {BioMed Central},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/28974235 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5627421},
    doi = {10.1186/s13059-017-1319-7},
    issn = {1474-760X},
    pmid = {28974235}
}

@article{Geman1996,
    title = {{An active testing model for tracking roads in satellite images}},
    year = {1996},
    journal = {Pattern Analysis and Machine Intelligence, IEEE Transactions on},
    author = {Geman, Donald and Jedynak, Bruno},
    number = {1},
    pages = {1–14},
    volume = {18},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=476006 http://hal.inria.fr/docs/00/07/39/35/PDF/RR-2757.pdf http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=476006&abstractAccess=no&userType=inst}
}

@inproceedings{Lima2010,
    title = {{An adaptive information extraction system based on wrapper induction with POS tagging}},
    year = {2010},
    author = {Lima, R. and Espinasse, B. and Freitas, F.},
    pages = {1815–1820},
    url = {http://dl.acm.org/citation.cfm?id=1774471}
}

@inproceedings{lima_adaptive_2010,
    title = {{An adaptive information extraction system based on wrapper induction with {\{}POS{\}} tagging}},
    year = {2010},
    booktitle = {Symposium on Applied Computing},
    author = {Lima, R and Espinasse, B and Freitas, F}
}

@article{Janizek2020,
    title = {{An Adversarial Approach for the Robust Classification of Pneumonia from Chest Radiographs}},
    year = {2020},
    author = {Janizek, Joseph D. and Erion, Gabriel and DeGrave, Alex J. and Lee, Su-In},
    month = {1},
    url = {http://arxiv.org/abs/2001.04051},
    arxivId = {2001.04051}
}

@article{Cooley1965,
    title = {{An Algorithm for the Machine Calculation of Complex Fourier Series}},
    year = {1965},
    journal = {Mathematics of Computation},
    author = {Cooley, James W and Tukey, John W},
    url = {https://www.ams.org/journal-terms-of-use},
    doi = {10.2307/2003354},
    issn = {00255718}
}

@techreport{Coates2011STL10,
    title = {{An Analysis of Single-Layer Networks in Unsupervised Feature Learning}},
    year = {2011},
    author = {Coates, Adam and Lee, Honglak and Ng, Andrew Y},
    month = {6},
    pages = {215--223},
    volume = {15},
    publisher = {JMLR Workshop and Conference Proceedings},
    url = {http://proceedings.mlr.press/v15/coates11a.html},
    issn = {1938-7228}
}

@inproceedings{Guo2018AEKNN,
    title = {{An Anomaly Detection Framework Based on Autoencoder and Nearest Neighbor}},
    year = {2018},
    booktitle = {2018 15th International Conference on Service Systems and Service Management (ICSSSM)},
    author = {Guo, Jia and Liu, Guannan and Zuo, Yuan and Wu, Junjie},
    month = {7},
    pages = {1--6},
    publisher = {IEEE},
    url = {https://ieeexplore.ieee.org/document/8464983/},
    isbn = {978-1-5386-5178-0},
    doi = {10.1109/ICSSSM.2018.8464983}
}

@misc{Shamout2020deterioration,
    title = {{An artificial intelligence system for predicting the deterioration of COVID-19 patients in the emergency department}},
    year = {2020},
    booktitle = {arXiv},
    author = {Shamout, Farah E. and Shen, Yiqiu and Wu, Nan and Kaku, Aakash and Park, Jungkyu and Makino, Taro and Jastrz{\c{e}}bski, Stanisław and Wang, Duo and Zhang, Ben and Dogra, Siddhant and Cao, Meng and Razavian, Narges and Kudlowitz, David and Azour, Lea and Moore, William and Lui, Yvonne W. and Aphinyanaphongs, Yindalon and Fernandez-Granda, Carlos and Geras, Krzysztof J.},
    month = {8},
    publisher = {arXiv},
    url = {https://github.com/nyukat/COVID-19_prognosis.},
    issn = {2331-8422},
    pmid = {32793769},
    arxivId = {2008.01774}
}

@article{Attia2019,
    title = {{An artificial intelligence-enabled ECG algorithm for the identification of patients with atrial fibrillation during sinus rhythm: a retrospective analysis of outcome prediction}},
    year = {2019},
    journal = {The Lancet},
    author = {Attia, Zachi I. and Noseworthy, Peter A. and Lopez-Jimenez, Francisco and Asirvatham, Samuel J. and Deshmukh, Abhishek J. and Gersh, Bernard J. and Carter, Rickey E. and Yao, Xiaoxi and Rabinstein, Alejandro A. and Erickson, Brad J. and Kapa, Suraj and Friedman, Paul A.},
    number = {10201},
    month = {9},
    pages = {861--867},
    volume = {394},
    publisher = {Lancet Publishing Group},
    doi = {10.1016/S0140-6736(19)31721-0},
    issn = {1474547X}
}

@article{Mena2005,
    title = {{An automatic method for road extraction in rural and semi-urban areas starting from high resolution satellite imagery}},
    year = {2005},
    journal = {Pattern Recognition Letters},
    author = {Mena, Juan B. and Malpica, José A.},
    number = {9},
    pages = {1201–1220},
    volume = {26},
    url = {http://www.sciencedirect.com/science/article/pii/S0167865504003265 http://www2.uah.es/juan_mena/Publicaciones/Road_extraction.pdf}
}

@article{Stevens1980,
    title = {{An ecdysteroid-induced alteration in the cell cycle of cultured Drosophilacells.}},
    year = {1980},
    journal = {Cell},
    author = {Stevens, B and Alvarez, C M and Bohman, R and O'Connor, J D},
    volume = {22},
    url = {http://dx.doi.org/10.1016/0092-8674(80)90543-7},
    doi = {10.1016/0092-8674(80)90543-7}
}

@article{freund2003efficient,
    title = {{An Efficient Boosting Algorithm for Combining Preferences}},
    year = {2003},
    journal = {Journal of Machine Learning Research},
    author = {Freund, Yoav and Iyer, Raj and Schapire, Robert E and Singer, Yoram},
    number = {Nov},
    pages = {933--969},
    volume = {4},
    isbn = {1581134924},
    doi = {10.1162/jmlr.2003.4.6.933},
    issn = {15324435},
    pmid = {345}
}

@inproceedings{Valiente,
    title = {{An efficient bottom-up distance between trees}},
    author = {Valiente, G.},
    pages = {212–219}
}

@inproceedings{valiente_efficient_,
    title = {{An efficient bottom-up distance between trees}},
    booktitle = {Proceedings of the 8th International Symposium on String Processing and Information Retrieval},
    author = {Valiente, G},
    pages = {212–219}
}

@article{Devereux2004,
    title = {{An efficient image segmentation algorithm for landscape analysis}},
    year = {2004},
    journal = {International Journal of Applied Earth Observation and Geoinformation},
    author = {Devereux, B. J. and Amable, G. S. and Posada, C. Costa},
    number = {1},
    pages = {47–61},
    volume = {6},
    url = {http://www.sciencedirect.com/science/article/pii/S030324340400039X}
}

@misc{Shieber2012,
    title = {{An efficient journal}},
    year = {2012},
    booktitle = {The Occasional Pamphlet},
    author = {Shieber, Stuart},
    month = {3},
    url = {http://blogs.law.harvard.edu/pamphlet/2012/03/06/an-efficient-journal/}
}

@inproceedings{Wassenberg2009,
    title = {{An efficient parallel algorithm for graph-based image segmentation}},
    year = {2009},
    author = {Wassenberg, Jan and Middelmann, Wolfgang and Sanders, Peter},
    pages = {1003–1010},
    publisher = {Springer},
    url = {http://link.springer.com/chapter/10.1007/978-3-642-03767-2_122 http://algo2.iti.kit.edu/wassenberg/wassenberg09parallelSegmentation.pdf}
}

@inproceedings{Zheng2011,
    title = {{An efficient user verification system via mouse movements}},
    year = {2011},
    author = {Zheng, N. and Paloski, A. and Wang, H.},
    pages = {139–150}
}

@article{Chatterjee2019,
    title = {{An Empirical Approach for Avoiding False Discoveries When Applying High-Dimensional Radiomics to Small Datasets}},
    year = {2019},
    journal = {IEEE Transactions on Radiation and Plasma Medical Sciences},
    author = {Chatterjee, Avishek and Vallieres, Martin and Dohan, Anthony and Levesque, Ives R. and Ueno, Yoshiko and Bist, Vipul and Saif, Sameh and Reinhold, Caroline and Seuntjens, Jan},
    number = {2},
    month = {3},
    pages = {201--209},
    volume = {3},
    url = {https://ieeexplore.ieee.org/document/8528467/},
    doi = {10.1109/TRPMS.2018.2880617},
    issn = {2469-7311}
}

@inproceedings{Chao2016,
    title = {{An empirical study and analysis of generalized zero-shot learning for object recognition in the wild}},
    year = {2016},
    author = {Chao, Wei Lun and Changpinyo, Soravit and Gong, Boqing and Sha, Fei},
    month = {5},
    url = {http://arxiv.org/abs/1605.04253},
    isbn = {9783319464749},
    doi = {10.1007/978-3-319-46475-6{\_}4},
    issn = {16113349},
    arxivId = {1605.04253}
}

@inproceedings{Toneva2019,
    title = {{An Empirical Study of Example Forgetting during Deep Neural Network Learning}},
    year = {2019},
    booktitle = {International Conference on Learning Representations},
    author = {Toneva, Mariya and Sordoni, Alessandro and Combes, Remi Tachet des and Trischler, Adam and Bengio, Yoshua and Gordon, Geoffrey J.},
    month = {12},
    url = {http://arxiv.org/abs/1812.05159},
    arxivId = {1812.05159}
}

@article{Platt2008,
    title = {{An Evaluation of an Object-Oriented Paradigm for Land Use/Land Cover Classification∗}},
    year = {2008},
    journal = {The Professional Geographer},
    author = {Platt, Rutherford V. and Rapoza, Lauren},
    number = {1},
    pages = {87–100},
    volume = {60},
    url = {http://www.tandfonline.com/doi/abs/10.1080/00330120701724152 http://public.gettysburg.edu/~rplatt/platt_rapoza_PG.pdf}
}

@article{10.1109/10.121642,
    title = {{An experimental system for auditory image representations}},
    year = {1992},
    journal = {IEEE transactions on biomedical engineering},
    author = {Meijer, Peter B L}
}

@inproceedings{Lienhart2002,
    title = {{An extended set of haar-like features for rapid object detection}},
    year = {2002},
    author = {Lienhart, R. and Maydt, J.},
    pages = {I–900},
    volume = {1},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1038171}
}

@article{Peng2005,
    title = {{An improved snake model for building detection from urban aerial images}},
    year = {2005},
    journal = {Pattern Recognition Letters},
    author = {Peng, Jing and Zhang, Dong and Liu, Yuncai},
    number = {5},
    month = {4},
    pages = {587--595},
    volume = {26},
    url = {http://www.sciencedirect.com/science/article/pii/S0167865504002600},
    doi = {10.1016/j.patrec.2004.09.033},
    issn = {0167-8655}
}

@article{PMID23749753,
    title = {{An introduction to sequence similarity "homology" searching.}},
    year = {2013},
    journal = {Current protocols in bioinformatics},
    author = {Pearson, William R},
    month = {6},
    publisher = {NIH Public Access},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/23749753 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3820096},
    doi = {10.1002/0471250953.bi0301s42},
    issn = {1934-340X},
    pmid = {23749753}
}

@article{Liu2018,
    title = {{An Open Access Database for Evaluating the Algorithms of Electrocardiogram Rhythm and Morphology Abnormality Detection}},
    year = {2018},
    journal = {Journal of Medical Imaging and Health Informatics},
    author = {Liu, Feifei and Liu, Chengyu and Zhao, Lina and Zhang, Xiangyu and Wu, Xiaoling and Xu, Xiaoyan and Liu, Yulin and Ma, Caiyun and Wei, Shoushui and He, Zhiqiang and Li, Jianqing and Yin Kwee, Eddie Ng},
    number = {7},
    month = {8},
    pages = {1368--1373},
    volume = {8},
    publisher = {American Scientific Publishers},
    doi = {10.1166/jmihi.2018.2442},
    issn = {2156-7018}
}

@techreport{Celi,
    title = {{An Open Benchmark for Causal Inference Using the MIMIC-III Dataset}},
    author = {Celi, Leo Anthony and Jung, Ken and Ghassemi, Marzyeh and Guzman, Carlos and Shalit, Uri and Sontag, David},
    url = {http://mghassem.mit.edu/wp-content/uploads/2013/02/Ghassemi_OHDSI_Submission2016.pdf}
}

@article{Ruder2017,
    title = {{An Overview of Multi-Task Learning in Deep Neural Networks}},
    year = {2017},
    journal = {arXiv},
    author = {Ruder, Sebastian},
    month = {6},
    url = {http://arxiv.org/abs/1706.05098},
    arxivId = {1706.05098}
}

@article{Mahdieh2013,
    title = {{An overview of mutation detection methods in genetic disorders.}},
    year = {2013},
    journal = {Iranian journal of pediatrics},
    author = {Mahdieh, Nejat and Rabbani, Bahareh},
    number = {4},
    month = {8},
    pages = {375--88},
    volume = {23},
    publisher = {Kowsar Medical Institute},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/24427490 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3883366},
    issn = {2008-2142},
    pmid = {24427490},
    keywords = {Carrier Detection, Chromosomal Aberration, Cytogenetics, Molecular Diagnostic Technique, Mutation}
}

@inproceedings{Liu1999,
    title = {{An XJML-based wrapper generator for Web information extraction}},
    year = {1999},
    author = {Liu, L. and Han, W. and Buttler, D. and Pu, C. and Tang, W.},
    pages = {540–543},
    volume = {28},
    url = {http://portal.acm.org/citation.cfm?id=304570}
}

@inproceedings{liu_xjml-based_1999,
    title = {{An {\{}XJML{\}}-based wrapper generator for Web information extraction}},
    year = {1999},
    booktitle = {{\{}ACM{\}} {\{}SIGMOD{\}} Record},
    author = {Liu, L and Han, W and Buttler, D and Pu, C and Tang, W}
}

@article{Laakso2012,
    title = {{Anatomy of open access publishing: a study of longitudinal development and internal structure}},
    shorttitle = {Anatomy of open access publishing},
    year = {2012},
    journal = {BMC Medicine},
    author = {Laakso, Mikael and Bj{\"{o}}rk, Bo-Christer},
    number = {1},
    pages = {124},
    volume = {10},
    url = {http://www.biomedcentral.com/1741-7015/10/124},
    doi = {10.1186/1741-7015-10-124},
    issn = {1741-7015},
    language = {en}
}

@article{Borovec2020ANHIR,
    title = {{ANHIR: Automatic Non-Rigid Histological Image Registration Challenge}},
    year = {2020},
    journal = {IEEE Transactions on Medical Imaging},
    author = {Borovec, Jiri and Kybic, Jan and Arganda-Carreras, Ignacio and Sorokin, Dmitry V. and Bueno, Gloria and Khvostikov, Alexander V. and Bakas, Spyridon and Chang, Eric I-Chao and Heldmann, Stefan and Kartasalo, Kimmo and Latonen, Leena and Lotz, Johannes and Noga, Michelle and Pati, Sarthak and Punithakumar, Kumaradevan and Ruusuvuori, Pekka and Skalski, Andrzej and Tahmasebi, Nazanin and Valkonen, Masi and Venet, Ludovic and Wang, Yizhe and Weiss, Nick and Wodzinski, Marek and Xiang, Yu and Xu, Yan and Yan, Yan and Yushkevich, Paul and Zhao, Shengyu and Munoz-Barrutia, Arrate},
    number = {10},
    month = {10},
    pages = {3042--3052},
    volume = {39},
    url = {https://ieeexplore.ieee.org/document/9058666/},
    doi = {10.1109/TMI.2020.2986331},
    issn = {0278-0062}
}

@book{Sigletos2002,
    title = {{Annotating Web pages for the needs of Web Information Extraction applications}},
    year = {2002},
    author = {Sigletos, G. and Farmakiotou, D. and Stamatakis, K. and Paliouras, G. and Karkaletsis, V.},
    publisher = {Citeseer}
}

@book{sigletos_annotating_2002,
    title = {{Annotating Web pages for the needs of Web Information Extraction applications}},
    year = {2002},
    author = {Sigletos, G and Farmakiotou, D and Stamatakis, K and Paliouras, G and Karkaletsis, V},
    publisher = {Citeseer}
}

@inproceedings{Ahmed2005,
    title = {{Anomaly intrusion detection based on biometrics}},
    year = {2005},
    author = {Ahmed, A. A.E and Traore, I.},
    pages = {452–453},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1495997 http://www.isot.ece.uvic.ca/publications/WorkShops/IEEE_SMC-IAW.pdf}
}

@article{Caicedo2016a,
    title = {{Applications in image-based profiling of perturbations}},
    year = {2016},
    journal = {Current Opinion in Biotechnology},
    author = {Caicedo, Juan C. and Singh, Shantanu and Carpenter, Anne E.},
    month = {6},
    pages = {134--142},
    volume = {39},
    publisher = {Elsevier Ltd},
    url = {http://linkinghub.elsevier.com/retrieve/pii/S0958166916301112 http://www.ncbi.nlm.nih.gov/pubmed/27089218 http://dx.doi.org/10.1016/j.copbio.2016.04.003},
    doi = {10.1016/j.copbio.2016.04.003},
    issn = {18790429},
    pmid = {27089218}
}

@article{Caicedo2016,
    title = {{Applications in image-based profiling of perturbations}},
    year = {2016},
    journal = {Current Opinion in Biotechnology},
    author = {Caicedo, Juan C. and Singh, Shantanu and Carpenter, Anne E.},
    pages = {134--142},
    volume = {39},
    publisher = {Elsevier Ltd},
    url = {http://dx.doi.org/10.1016/j.copbio.2016.04.003},
    doi = {10.1016/j.copbio.2016.04.003},
    issn = {18790429},
    pmid = {27089218}
}

@misc{Chui2018,
    title = {{Applying AI for social good | McKinsey}},
    year = {2018},
    author = {Chui, Michael and Francisco, San and Harryson, Martin and Manyika, James and Roberts, Roger},
    url = {https://www.mckinsey.com/featured-insights/artificial-intelligence/applying-artificial-intelligence-for-social-good?cid=other-eml-alt-mgi-mck-oth-1811}
}

@article{Malpica1997,
    title = {{Applying watershed algorithms to the segmentation of clustered nuclei.}},
    year = {1997},
    journal = {Cytometry},
    author = {Malpica, N and de Solorzano, C O and Vaquero, J J and Santos, A and Vallcorba, I and Garcia-Sagredo, J M and del Pozo, F},
    volume = {28},
    url = {http://dx.doi.org/3.0.CO;2-7},
    doi = {3.0.CO;2-7}
}

@article{Hu2003,
    title = {{Approaches to large-scale urban modeling}},
    year = {2003},
    journal = {Computer Graphics and Applications, IEEE},
    author = {Hu, Jinhui and You, Suya and Neumann, Ulrich},
    number = {6},
    pages = {62–69},
    volume = {23},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1242383 http://graphics.usc.edu/~suyay/paper/CGA03.pdf http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1242383&abstractAccess=no&userType=inst}
}

@article{Gilbert2009,
    title = {{Approximate Sparse Recovery: Optimizing Time and Measurements}},
    year = {2009},
    author = {Gilbert, Anna C. and Li, Yi and Porat, Ely and Strauss, Martin J.},
    month = {12},
    url = {http://arxiv.org/abs/0912.0229},
    arxivId = {0912.0229}
}

@misc{ERSI,
    title = {{ArcGIS API for Silverlight}},
    author = {{ERSI}},
    url = {http://help.arcgis.com/en/webapi/silverlight/index.html}
}

@misc{Gichoya2018,
    title = {{Are computers better than doctors ?}},
    year = {2018},
    author = {Gichoya, Judy and Borstelmann, Stephen},
    url = {https://mc.ai/are-computers-better-than-doctors/}
}

@misc{10.11909/j.issn.1671-5411.2020.04.005,
    title = {{Armarium facilitating angina management post myocardial infarction concomitant with coronavirus disease 2019}},
    year = {2020},
    booktitle = {Journal of Geriatric Cardiology},
    author = {Cai, Xiao Qing and Jiao, Pi Qi and Wu, Tao and Chen, Fu Ming and Han, Bao Shi and Zhang, Jiu Cong and Xiao, Yong Jiu and Chen, Zhi Feng and Li, Jun and Zhao, Yu Ying and Ma, Ling and Liu, Yan and Shi, Ya Jun and Dai, Pei Jun and Chen, Yun Dai},
    number = {4},
    pages = {217--220},
    volume = {17},
    publisher = {Science Press},
    doi = {10.11909/J.ISSN.1671-5411.2020.04.005},
    issn = {16715411},
    pmid = {32362920},
    keywords = {Acute myocardial infarction, Angina, Coronavirus disease 2019, Electrocardiogram, Stethoscope}
}

@article{Yldrm2018,
    title = {{Arrhythmia detection using deep convolutional neural network with long duration ECG signals}},
    year = {2018},
    journal = {Computers in Biology and Medicine},
    author = {Yıldırım, Özal and P{\l}awiak, Paweł and Tan, Ru San and Acharya, U. Rajendra},
    month = {11},
    pages = {411--420},
    volume = {102},
    publisher = {Elsevier Ltd},
    doi = {10.1016/j.compbiomed.2018.09.009},
    issn = {18790534},
    pmid = {30245122},
    keywords = {Convolutional neural networks, Deep learning, ECG classification, cardiac arrhythmias}
}

@book{Russell2009,
    title = {{Artificial intelligence}},
    year = {2009},
    author = {Russell, Stuart},
    edition = {3rd ed.},
    publisher = {Pearson Education},
    address = {Upper Saddle River N.J. ;;Harlow},
    isbn = {9780132071482}
}

@misc{England2019,
    title = {{Artificial intelligence for medical image analysis: A guide for authors and reviewers}},
    year = {2019},
    booktitle = {American Journal of Roentgenology},
    author = {England, Joseph R. and Cheng, Phillip M.},
    number = {3},
    month = {3},
    pages = {513--519},
    volume = {212},
    publisher = {American Roentgen Ray Society},
    url = {www.ajronline.org},
    doi = {10.2214/AJR.18.20490},
    issn = {15463141},
    pmid = {30557049},
    keywords = {Artificial intelligence, Deep learning, Machine learning, Technology assessment}
}

@article{Minchole2019,
    title = {{Artificial intelligence for the electrocardiogram}},
    year = {2019},
    journal = {Nature Medicine},
    author = {Minchol{\'{e}}, Ana and Rodriguez, Blanca},
    number = {1},
    month = {1},
    pages = {22--23},
    volume = {25},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/articles/s41591-018-0306-1},
    doi = {10.1038/s41591-018-0306-1},
    issn = {1078-8956},
    keywords = {Heart failure, Machine learning}
}

@article{Lovejoy2019,
    title = {{Artificial intelligence in the intensive care unit}},
    year = {2019},
    journal = {Critical Care},
    author = {Lovejoy, Christopher A. and Buch, Varun and Maruthappu, Mahiben},
    number = {1},
    month = {12},
    pages = {7},
    volume = {23},
    publisher = {BioMed Central},
    url = {https://ccforum.biomedcentral.com/articles/10.1186/s13054-018-2301-9},
    doi = {10.1186/s13054-018-2301-9},
    issn = {1364-8535},
    keywords = {Emergency Medicine, Intensive / Critical Care Medicine}
}

@article{Nagendran2020,
    title = {{Artificial intelligence versus clinicians: Systematic review of design, reporting standards, and claims of deep learning studies in medical imaging}},
    year = {2020},
    journal = {The BMJ},
    author = {Nagendran, Myura and Chen, Yang and Lovejoy, Christopher A. and Gordon, Anthony C. and Komorowski, Matthieu and Harvey, Hugh and Topol, Eric J. and Ioannidis, John P.A. and Collins, Gary S. and Maruthappu, Mahiben},
    month = {3},
    volume = {368},
    publisher = {BMJ Publishing Group},
    doi = {10.1136/bmj.m689},
    issn = {17561833},
    pmid = {32213531}
}

@article{POLYMENI2010,
    title = {{Aspects on the relief of living surfaces using atomic force microscopy allow “art” to imitate nature}},
    year = {2010},
    journal = {Integrative Zoology},
    author = {POLYMENI, Rosa and SPANAKIS, Emmanuel and ARGIROPOULOS, Apostolos and RHIZOPOULOU, Sophia},
    number = {3},
    month = {9},
    pages = {218--225},
    volume = {5},
    publisher = {Blackwell Publishing Ltd},
    url = {http://doi.wiley.com/10.1111/j.1749-4877.2010.00207.x},
    doi = {10.1111/j.1749-4877.2010.00207.x},
    issn = {17494869},
    keywords = {amphibian, atomic force microscope, pollen, relief, surface}
}

@article{Hess2004,
    title = {{Assam: A tool for semi-automatically annotating semantic web services}},
    shorttitle = {Assam},
    year = {2004},
    journal = {The Semantic Web–ISWC 2004},
    author = {He{\textbackslash}ss, A. and Johnston, E. and Kushmerick, N.},
    pages = {320–334}
}

@article{hess_assam:_2004,
    title = {{Assam: A tool for semi-automatically annotating semantic web services}},
    shorttitle = {Assam},
    year = {2004},
    journal = {The Semantic Web–{\{}ISWC{\}} 2004},
    author = {He{\textbackslash}textbackslashss, A and Johnston, E and Kushmerick, N}
}

@article{Arun2020MedicalSaliency,
    title = {{Assessing the (Un)Trustworthiness of Saliency Maps for Localizing Abnormalities in Medical Imaging}},
    year = {2020},
    journal = {medRxiv},
    author = {Arun, Nishanth and Gaw, Nathan and Singh, Praveer and Chang, Ken and Aggarwal, Mehak and Chen, Bryan and Hoebel, Katharina and Gupta, Sharut and Patel, Jay and Gidwani, Mishka and Adebayo, Julius and Li, Matthew D. and Kalpathy-Cramer, Jayashree},
    doi = {10.1101/2020.07.28.20163899}
}

@inproceedings{Arun2020CXRSanityCheck,
    title = {{Assessing the validity of saliency maps for abnormality localization in medical imaging}},
    year = {2020},
    booktitle = {Medical Imaging with Deep Learning Abstract},
    author = {Arun, Nishanth Thumbavanam and Gaw, Nathan and Singh, Praveer and Chang, Ken and Hoebel, Katharina Viktoria and Patel, Jay and Gidwani, Mishka and Kalpathy-Cramer, Jayashree},
    url = {https://arxiv.org/abs/2006.00063},
    arxivId = {2006.00063}
}

@article{Dunnmon2019,
    title = {{Assessment of convolutional neural networks for automated classification of chest radiographs}},
    year = {2019},
    journal = {Radiology},
    author = {Dunnmon, Jared A. and Yi, Darvin and Langlotz, Curtis P. and R{\'{e}}, Christopher and Rubin, Daniel L. and Lungren, Matthew P.},
    number = {3},
    month = {3},
    pages = {537--544},
    volume = {290},
    publisher = {Radiological Society of North America Inc.},
    url = {https://pubmed.ncbi.nlm.nih.gov/30422093/},
    doi = {10.1148/radiol.2018181422},
    issn = {15271315},
    pmid = {30422093},
    keywords = {Computer*, Computer-Assisted / methods*, Darvin Yi, Extramural, Female, Humans, Jared A Dunnmon, Lung / diagnostic imaging, MEDLINE, Male, Matthew P Lungren, N.I.H., NCBI, NIH, NLM, National Center for Biotechnology Information, National Institutes of Health, National Library of Medicine, Neural Networks, Non-P.H.S., Non-U.S. Gov't, PMC6358056, PubMed Abstract, ROC Curve, Radiographic Image Interpretation, Radiography, Radiologists, Research Support, Retrospective Studies, Thoracic / methods*, U.S. Gov't, doi:10.1148/radiol.2018181422, pmid:30422093}
}

@article{Lee2016a,
    title = {{Asymmetric multi-task learning based on task relatedness and loss}},
    year = {2016},
    journal = {International Conference of Machine Learning},
    author = {Lee, Giwoong and Yang, Eunho and Hwang, Sung Ju},
    url = {https://www.semanticscholar.org/paper/Asymmetric-multi-task-learning-based-on-task-and-Lee-Yang/f4669ac0185c2ca1a1cf6fe4f48234c6970c15af}
}

@article{Guarin2015,
    title = {{Atmospheric pollen and spore content in the urban area of the city of Medellin , Colombia}},
    year = {2015},
    journal = {Hoehnea},
    author = {Guar{\'{i}}n, Fernando Alzate and Abril, Mario Alberto Quijano and Alvarez, Astrid and Fonnegra, Ramiro and Guar{\'{i}}n, Fernando Alzate and Abril, Mario Alberto Quijano and Alvarez, Astrid and Fonnegra, Ramiro and Alberto, Mario and Abril, Quijano and Alvarez, Astrid and Fonnegra, Ramiro},
    number = {1},
    month = {3},
    pages = {9--19},
    volume = {42},
    publisher = {Instituto de Bot{\^{a}}nica},
    url = {http://www.scielo.br/scielo.php?script=sci_arttext&pid=S2236-89062015000100009&lng=en&nrm=iso&tlng=en},
    doi = {10.1590/2236-8906-52/2013},
    issn = {2236-8906},
    keywords = {atmosfera del {\'{a}}rea urbana, colombia, con el objetivo de, contenidas en el {\'{a}}rea, de medell{\'{i}}n, el muestreo se realiz{\'{o}}, entre febrero de 2010, identificar polen y esporas, la ni{\~{n}}a phenomenon, las muestras de polen, lo largo del a{\~{n}}o, palynology, polen atmosf{\'{e}}rico y esporas, pollinosis, por el aire a, que se transportan, resumen-, se realiz{\'{o}}, tropics, un monitoreo de la, urbana de la ciudad, y esporas, y marzo de 2011}
}

@article{Gomes,
    title = {{Atomic Convolutional Networks for Predicting Protein-Ligand Binding Affinity}},
    author = {Gomes, Joseph and Ramsundar, Bharath and Feinberg, Evan N and Pande, Vijay S},
    url = {https://arxiv.org/pdf/1703.10603.pdf}
}

@article{Vaswani2017,
    title = {{Attention Is All You Need}},
    year = {2017},
    author = {Vaswani, Ashish and Shazeer, Noam and Parmar, Niki and Uszkoreit, Jakob and Jones, Llion and Gomez, Aidan N. and Kaiser, Lukasz and Polosukhin, Illia},
    month = {6},
    url = {http://arxiv.org/abs/1706.03762 https://arxiv.org/abs/1706.03762},
    arxivId = {1706.03762}
}

@article{Shih2019RSNAKaggle,
    title = {{Augmenting the National Institutes of Health Chest Radiograph Dataset with Expert Annotations of Possible Pneumonia}},
    year = {2019},
    journal = {Radiology: Artificial Intelligence},
    author = {Shih, George and Wu, Carol C. and Halabi, Safwan S. and Kohli, Marc D. and Prevedello, Luciano M. and Cook, Tessa S. and Sharma, Arjun and Amorosa, Judith K. and Arteaga, Veronica and Galperin-Aizenberg, Maya and Gill, Ritu R. and Godoy, Myrna C.B. and Hobbs, Stephen and Jeudy, Jean and Laroia, Archana and Shah, Palmi N. and Vummidi, Dharshan and Yaddanapudi, Kavitha and Stein, Anouk},
    number = {1},
    month = {1},
    pages = {e180041},
    volume = {1},
    publisher = {Radiological Society of North America (RSNA)},
    url = {https://pubs.rsna.org/doi/abs/10.1148/ryai.2019180041},
    doi = {10.1148/ryai.2019180041},
    issn = {2638-6100}
}

@inproceedings{Kingma2013,
    title = {{Auto-Encoding Variational Bayes}},
    year = {2014},
    booktitle = {International Conference on Learning Representations},
    author = {Kingma, Diederik P and Welling, Max},
    url = {http://arxiv.org/abs/1312.6114},
    arxivId = {1312.6114}
}

@article{Li2020SiameseCXR,
    title = {{Automated Assessment and Tracking of COVID-19 Pulmonary Disease Severity on Chest Radiographs using Convolutional Siamese Neural Networks}},
    year = {2020},
    journal = {Radiology: Artificial Intelligence},
    author = {Li, Matthew D. and Arun, Nishaeminth Thumbavanam and Gidwani, Mishka and Chang, Ken and Deng, Francis and Little, Brent P. and Mendoza, Dexter P. and Lang, Min and Lee, Susanna I. and O’Shea, Aileen and Parakh, Anushri and Singh, Praveer and Kalpathy-Cramer, Jayashree},
    month = {7},
    publisher = {Radiological Society of North America (RSNA)},
    url = {http://pubs.rsna.org/doi/10.1148/ryai.2020200079},
    doi = {10.1148/ryai.2020200079},
    issn = {2638-6100}
}

@article{Jin2005,
    title = {{Automated Building Extraction from High-Resolution Satellite Imagery in Urban Areas Using Structural, Contextual, and Spectral Information}},
    year = {2005},
    journal = {EURASIP Journal on Advances in Signal Processing},
    author = {Jin, Xiaoying and Davis, Curt H.},
    number = {14},
    pages = {2196--2206},
    volume = {2005},
    url = {http://dl.acm.org/citation.cfm?id=1287274 http://asp.eurasipjournals.com/content/pdf/1687-6180-2005-745309.pdf},
    isbn = {1110-8657},
    doi = {10.1155/ASP.2005.2196},
    issn = {1687-6172},
    keywords = {and phrases, building extraction, high-resolution satellite imagery, hypothesis and, information fusion, mathematical morphology, shadow, verification}
}

@article{Druaguct2006,
    title = {{Automated classification of landform elements using object-based image analysis}},
    year = {2006},
    journal = {Geomorphology},
    author = {Dragut, L and Blaschke, Thomas},
    number = {3},
    pages = {330--344},
    volume = {81},
    url = {http://www.sciencedirect.com/science/article/pii/S0169555X06001589 http://home.shirazu.ac.ir/~kompani/geomorphology/geomorphology-lec-papers-mehr88/dragut-automatedclassobject-geomorph2006.pdf},
    isbn = {0169-555X},
    doi = {10.1016/j.geomorph.2006.04.013},
    issn = {0169555X},
    keywords = {Fuzzy clas, Geomorphometry, Landform, Segmentation}
}

@inproceedings{Galloway2014,
    title = {{Automated crater detection and counting using the hough transform}},
    year = {2014},
    author = {Galloway, Monty J. and Benedix, Gretchen K. and Bland, Phil A. and Paxman, Jonathan and Towner, Martin C. and Tan, Tele},
    pages = {1579–1583},
    publisher = {IEEE},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7025316}
}

@article{Cohen2016c,
    title = {{Automated Crater Detection using Machine Learning}},
    year = {2016},
    journal = {Graduate PhD Theses},
    author = {Cohen, Joseph Paul},
    month = {6}
}

@article{Kim2005,
    title = {{Automated crater detection, a new tool for Mars cartography and chronology}},
    year = {2005},
    journal = {Photogrammetric engineering and remote sensing},
    author = {Kim, J. R and Muller, J. and Van Gasselt, S. and Morley, J. G and Neukum, G.},
    number = {10},
    pages = {1205},
    volume = {71},
    issn = {99-1112}
}

@article{Shoeibi2020,
    title = {{Automated Detection and Forecasting of COVID-19 using Deep Learning Techniques: A Review}},
    year = {2020},
    author = {Shoeibi, Afshin and Khodatars, Marjane and Alizadehsani, Roohallah and Ghassemi, Navid and Jafari, Mahboobeh and Moridian, Parisa and Khadem, Ali and Sadeghi, Delaram and Hussain, Sadiq and Zare, Assef and Sani, Zahra Alizadeh and Bazeli, Javad and Khozeimeh, Fahime and Khosravi, Abbas and Nahavandi, Saeid and Acharya, U. Rajendra and Shi, Peng},
    month = {7},
    url = {http://arxiv.org/abs/2007.10785},
    arxivId = {2007.10785},
    keywords = {Classifi-cation, Deep Learning, Diagnosis, Forecasting, Index Terms-COVID-19, Segmentation}
}

@article{Ok2013,
    title = {{Automated detection of buildings from single VHR multispectral images using shadow information and graph cuts}},
    year = {2013},
    journal = {ISPRS Journal of Photogrammetry and Remote Sensing},
    author = {Ok, Ali Ozgun},
    pages = {21--40},
    volume = {86},
    url = {http://www.sciencedirect.com/science/article/pii/S0924271613002050},
    isbn = {0924-2716},
    doi = {10.1016/j.isprsjprs.2013.09.004},
    issn = {09242716},
    keywords = {Building detection, Graph cuts, Satellite imagery, Shadow evidence}
}

@inproceedings{Burl2001,
    title = {{Automated Detection of Craters and Other Geological Features}},
    year = {2001},
    author = {Burl, M.C. and Merline, W. J. and Colwell, W. and Bierhaus, E.B. and Chapman, C. R.},
    month = {6}
}

@article{Lam2018,
    title = {{Automated Detection of Diabetic Retinopathy using Deep Learning.}},
    year = {2018},
    journal = {AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science},
    author = {Lam, Carson and Yi, Darvin and Guo, Margaret and Lindsey, Tony},
    pages = {147--155},
    volume = {2017},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/29888061%0Ahttp://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5961805},
    issn = {2153-4063},
    pmid = {29888061}
}

@article{Ok,
    title = {{Automated Extraction of Buildings and Roads in a graph partitioning framework}},
    year = {2013},
    journal = {ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences},
    author = {Ok, Ali Ozgun},
    number = {November},
    volume = {II},
    url = {http://www.isprs-ann-photogramm-remote-sens-spatial-inf-sci.net/II-3-W3/79/2013/isprsannals-II-3-W3-79-2013.pdf},
    keywords = {building extraction, graph-cuts, multi-label partitioning, road extraction, satellite imagery}
}

@article{Marcos2015,
    title = {{Automated pollen identification using microscopic imaging and texture analysis}},
    year = {2015},
    journal = {Micron},
    author = {Marcos, J. Víctor and Nava, Rodrigo and Crist{\'{o}}bal, Gabriel and Redondo, Rafael and Escalante-Ram{\'{i}}rez, Boris and Bueno, Gloria and D{\'{e}}niz, Óscar and Gonz{\'{a}}lez-Porto, Amelia and Pardo, Cristina and Chung, François and Rodr{\'{i}}guez, Tomás},
    volume = {68},
    doi = {10.1016/j.micron.2014.09.002},
    issn = {09684328},
    pmid = {25259684}
}

@article{Boland1998,
    title = {{Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images.}},
    year = {1998},
    journal = {Cytometry},
    author = {Boland, M V and Markey, M K and Murphy, R F},
    volume = {33},
    url = {http://dx.doi.org/3.0.CO;2-R},
    doi = {3.0.CO;2-R}
}

@inproceedings{Somayaji2000,
    title = {{Automated response using system-call delays}},
    year = {2000},
    author = {Somayaji, A. and Forrest, S.},
    pages = {14–14}
}

@article{Wagner2012,
    title = {{Automated Spore Measurements Using Microscopy, Image Analysis, and Peak Recognition of Near-Monodisperse Aerosols}},
    year = {2012},
    journal = {Aerosol Science and Technology},
    author = {Wagner, Jeff and Macher, Janet},
    number = {8},
    pages = {862--873},
    volume = {46},
    url = {http://www.scopus.com/inward/record.url?eid=2-s2.0-84862274754&partnerID=tZOtx3y1},
    doi = {10.1080/02786826.2012.674232},
    issn = {0278-6826}
}

@article{Stager1992,
    title = {{Automated systems for identification of microorganisms.}},
    year = {1992},
    journal = {Clinical microbiology reviews},
    author = {Stager, C E and Davis, J R},
    number = {3},
    pages = {302--327},
    volume = {5},
    doi = {10.1128/CMR.5.3.302.Updated},
    issn = {0893-8512},
    pmid = {1498768}
}

@article{Annarumma2019,
    title = {{Automated Triaging of Adult Chest Radiographs with Deep Artificial Neural Networks}},
    year = {2019},
    journal = {Radiology},
    author = {Annarumma, Mauro and Withey, Samuel J. and Bakewell, Robert J. and Pesce, Emanuele and Goh, Vicky and Montana, Giovanni},
    number = {1},
    month = {4},
    pages = {196--202},
    volume = {291},
    url = {http://pubs.rsna.org/doi/10.1148/radiol.2018180921},
    doi = {10.1148/radiol.2018180921},
    issn = {0033-8419}
}

@inproceedings{wu2017automatic,
    title = {{Automatic Alt-text: Computer-generated Image Descriptions for Blind Users on a Social Network Service.}},
    year = {2017},
    booktitle = {CSCW},
    author = {Wu, Shaomei and Wieland, Jeffrey and Farivar, Omid and Schiller, Julie},
    pages = {1180--1192}
}

@article{Gomez-Bombarelli2016,
    title = {{Automatic chemical design using a data-driven continuous representation of molecules}},
    year = {2016},
    author = {G{\'{o}}mez-Bombarelli, Rafael and Duvenaud, David and Hern{\'{a}}ndez-Lobato, José Miguel and Aguilera-Iparraguirre, Jorge and Hirzel, Timothy D. and Adams, Ryan P. and Aspuru-Guzik, Alán},
    month = {10},
    url = {http://arxiv.org/abs/1610.02415},
    arxivId = {1610.02415}
}

@article{Goez-Bombarelli,
    title = {{Automatic Chemical Design Using a Data-Driven Continuous Representation of Molecules}},
    author = {Goez-Bombarelli, Rafael and Wei, Jennifer N and Duvenaud, David and Hernadez-Lobato, Joseiguel and Sachez-Lengeling, Benjamín and Sheberla, Dennis and Aguilera-Iparraguirre, Jorge and Hirzel, Timothy D and Adams, Ryan P and Aspuru-Guzik, Ala},
    url = {https://pubs.acs.org/doi/pdf/10.1021/acscentsci.7b00572},
    doi = {10.1021/acscentsci.7b00572}
}

@inproceedings{Plesko2004,
    title = {{Automatic Crater Counts on Mars}},
    year = {2004},
    author = {Plesko, C. and Brumby, S. and Asphaug, E. and Chamberlain, D. and Engel, T.},
    month = {3},
    pages = {1935},
    volume = {35},
    url = {http://adsabs.harvard.edu/abs/2004LPI....35.1935P}
}

@article{Rodriguez-Damian2006,
    title = {{Automatic detection and classification of grains of pollen based on shape and texture}},
    year = {2006},
    journal = {IEEE Transactions on Systems, Man and Cybernetics, Part C (Applications and Reviews)},
    author = {Rodriguez-Damian, M. and Cernadas, Eva and Formella, Arno and Fernandez-Delgado, M. and {Pilar De Sa-Otero}},
    number = {4},
    pages = {531--542},
    volume = {36},
    url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=1643845},
    doi = {10.1109/TSMCC.2005.855426},
    issn = {1094-6977},
    keywords = {Air safety, Application software, Food technology, Geology, Image reconstruction, Numerical analysis, Object recognition, Optical microscopy, Scanning electron microscopy, Shape, Urticaceae family, botany, computer vision, image classification, image segmentation, image texture, palynological data, pollen grain classification, pollen grain detection, pollinic analysis, shape analysis, texture analysis}
}

@article{Ding2010a,
    title = {{Automatic Detection of Craters in Planetary Images: An Embedded Framework Using Feature Selection and Boosting}},
    shorttitle = {Automatic Detection of Craters in Planetary Images},
    year = {2010},
    journal = {CIKM10},
    author = {Ding, W. and Stepinski, T. F and Bandeira, L. and Vilalta, R. and Wu, Y. and Lu, Z. and Cao, T.},
    url = {http://www.cs.umb.edu/~ding/papers/CIKM2010.pdf}
}

@article{Akcay2008,
    title = {{Automatic detection of geospatial objects using multiple hierarchical segmentations}},
    year = {2008},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Akcay, Huseyin Gokhan and Aksoy, Selim},
    number = {7},
    pages = {2097–2111},
    volume = {46},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4538197 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=4538197&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D4538197}
}

@article{Awrangjeb2010,
    title = {{Automatic detection of residential buildings using LIDAR data and multispectral imagery}},
    year = {2010},
    journal = {ISPRS Journal of Photogrammetry and Remote Sensing},
    author = {Awrangjeb, Mohammad and Ravanbakhsh, Mehdi and Fraser, Clive S.},
    number = {5},
    pages = {457–467},
    volume = {65},
    url = {http://www.sciencedirect.com/science/article/pii/S0924271610000468 http://users.monash.edu.au/~mawrangj/Papers/Awrangjeb et al_JPRS 2010.pdf}
}

@article{Urbach2009,
    title = {{Automatic detection of sub-km craters in high resolution planetary images}},
    year = {2009},
    journal = {Planetary and Space Science},
    author = {Urbach, E. R and Stepinski, T. F},
    number = {7},
    volume = {57},
    url = {http://www.lpi.usra.edu/science/stepinskiWebPage/pdfFiles/pss2009_57(4).pdf},
    issn = {0032-0633}
}

@inproceedings{Bandeira2010,
    title = {{Automatic Detection of Sub-km Craters Using Shape and Texture Information}},
    year = {2010},
    author = {Bandeira, L. and Ding, W. and Stepinski, T. F},
    month = {3},
    url = {http://adsabs.harvard.edu/abs/2010LPI....41.1144B}
}

@inproceedings{Ribeiro2018,
    title = {{Automatic Diagnosis of Short-Duration 12-Lead ECG using a Deep Convolutional Network}},
    year = {2018},
    booktitle = {Machine Learning for Health (ML4H) Workshop at NeurIPS},
    author = {Ribeiro, Antônio H. and Ribeiro, Manoel Horta and Paix{\~{a}}o, Gabriela and Oliveira, Derick and Gomes, Paulo R. and Canazart, Jéssica A. and Pifano, Milton and Meira, Wagner and Sch{\"{o}}n, Thomas B. and Ribeiro, Antonio Luiz},
    month = {11},
    url = {http://arxiv.org/abs/1811.12194},
    arxivId = {1811.12194}
}

@inproceedings{paszke2017pytorch,
    title = {{Automatic differentiation in PyTorch}},
    year = {2017},
    booktitle = {Neural Information Processing Systems Autodiff Workshop},
    author = {Paszke, Adam and Chanan, Gregory and Lin, Zeming and Gross, Sam and Yang, Edward and Antiga, Luca and Devito, Zachary}
}

@article{Plesko2002,
    title = {{Automatic feature extraction for panchromatic Mars Global Surveyor Mars Orbiter camera imagery}},
    year = {2002},
    journal = {Imaging Spectromerty VII, volume SPIE-4480},
    author = {Plesko, Catherine S. and Brumby, Steven P. and Leovy, Conway B.},
    pages = {139–146},
    url = {http://www.spiedl.org/data/Conferences/SPIEP/32401/139_1.pdf}
}

@article{Uricchio2016,
    title = {{Automatic Image Annotation via Label Transfer in the Semantic Space}},
    year = {2016},
    author = {Uricchio, Tiberio and Ballan, Lamberto and Seidenari, Lorenzo and Del Bimbo, Alberto},
    month = {5},
    url = {http://arxiv.org/abs/1605.04770},
    arxivId = {1605.04770}
}

@article{Afshari2018,
    title = {{Automatic localization of normal active organs in 3D PET scans}},
    year = {2018},
    journal = {Computerized Medical Imaging and Graphics},
    author = {Afshari, Saeedeh and BenTaieb, Aïcha and Hamarneh, Ghassan},
    month = {12},
    pages = {111--118},
    volume = {70},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/30340095 https://linkinghub.elsevier.com/retrieve/pii/S0895611118305457},
    doi = {10.1016/j.compmedimag.2018.09.008},
    issn = {08956111},
    pmid = {30340095},
    keywords = {Cancer, Object detection, Object localization, Organ, Positron emission tomography, Tumor}
}

@article{Karantzalos2008,
    title = {{Automatic model-based building detection from single panchromatic high resolution images}},
    year = {2008},
    journal = {International Archives of the Photogrammetry. Remote Sensing {\&} Spatial Information Sciences},
    author = {Karantzalos, Konstantinos and Paragios, Nikos},
    pages = {225--230},
    volume = {37},
    url = {http://www.isprs.org/proceedings/XXXVII/congress/3_pdf/19.pdf}
}

@article{Mayer1999,
    title = {{Automatic Object Extraction from Aerial Imagery-A Survey Focusing on Buildings}},
    year = {1999},
    journal = {Computer Vision and Image Understanding},
    author = {Mayer, Helmut},
    number = {2},
    month = {5},
    pages = {138--149},
    volume = {74},
    url = {http://www.sciencedirect.com/science/article/pii/S1077314299907506 http://www.sciencedirect.com/science?_ob=MiamiImageURL&_cid=271018&_user=1516297&_pii=S1077314299907506&_check=y&_origin=article&_zone=toolbar&_coverDate=01-May-1999&view=c&originContentFa},
    doi = {10.1006/cviu.1999.0750},
    issn = {1077-3142}
}

@article{Chung2015,
    title = {{Automatic Pollen Grain and Exine Segmentation from Microscope Images}},
    year = {2015},
    author = {Chung, François and Rodr{\'{i}}guez, Tomás},
    month = {3},
    url = {http://arxiv.org/abs/1503.05767},
    arxivId = {1503.05767}
}

@inproceedings{Earl2005,
    title = {{Automatic recognition of crater-like structures in terrestrial and planetary images}},
    year = {2005},
    author = {Earl, J. and Chicarro, A. F. and Koeberl, C. and Marchetti, P. G and Milnes, M.},
    pages = {1319},
    volume = {36}
}

@incollection{Barata2004,
    title = {{Automatic Recognition of Impact Craters on the Surface of Mars}},
    year = {2004},
    author = {Barata, Teresa and Alves, E. Ivo and Saraiva, José and Pina, Pedro},
    editor = {Campilho, Aurélio and Kamel, Mohamed},
    pages = {489--496},
    volume = {3212},
    publisher = {Springer Berlin Heidelberg},
    url = {http://www.springerlink.com/content/gvwc5l5m2r9hflg5/},
    address = {Berlin, Heidelberg},
    isbn = {978-3-540-23240-7}
}

@inproceedings{Chidlovskii2001,
    title = {{Automatic repairing of web wrappers}},
    year = {2001},
    author = {Chidlovskii, Boris},
    pages = {24–30},
    publisher = {ACM},
    url = {http://dl.acm.org/citation.cfm?id=502938}
}

@article{Kaur2013,
    title = {{Automatic Road Detection of Satellite Images-A Survey}},
    year = {2013},
    journal = {IJCAIT},
    author = {Kaur, Supreet},
    number = {2},
    pages = {32–34},
    volume = {3},
    url = {http://ijcait.com/IJCAIT/index.php/www-ijcs/article/view/344 http://ijcait.com/IJCAIT/index.php/www-ijcs/article/download/344/163}
}

@article{ANIL,
    title = {{Automatic Road Extraction from High Resolution Imagery Based On Statistical Region Merging and Skeletonization}},
    author = {ANIL, PN and NATARAJAN, S.},
    url = {http://www.ijest.info/docs/IJEST10-02-03-08.pdf}
}

@article{Shih2005,
    title = {{Automatic seeded region growing for color image segmentation}},
    year = {2005},
    journal = {Image and Vision Computing},
    author = {Shih, Frank Y. and Cheng, Shouxian},
    number = {10},
    month = {9},
    pages = {877--886},
    volume = {23},
    url = {http://www.sciencedirect.com/science/article/pii/S0262885605000673 http://www.sciencedirect.com/science/article/pii/S0262885605000673/pdfft?md5=56f0c72e768e7cdb133ebfe61e81a718&pid=1-s2.0-S0262885605000673-main.pdf},
    doi = {10.1016/j.imavis.2005.05.015},
    issn = {0262-8856}
}

@article{Ahmadi2010,
    title = {{Automatic urban building boundary extraction from high resolution aerial images using an innovative model of active contours}},
    year = {2010},
    journal = {International Journal of Applied Earth Observation and Geoinformation},
    author = {Ahmadi, Salman and Zoej, M. J. and Ebadi, Hamid and Moghaddam, Hamid Abrishami and Mohammadzadeh, Ali},
    number = {3},
    pages = {150–157},
    volume = {12},
    url = {http://www.sciencedirect.com/science/article/pii/S0303243410000115}
}

@inproceedings{Reis2004,
    title = {{Automatic web news extraction using tree edit distance}},
    year = {2004},
    author = {Reis, D. C and Golgher, P. B and Silva, A. S and Laender, A. F},
    pages = {502–511},
    series = {WWW '04},
    publisher = {ACM},
    url = {http://portal.acm.org/citation.cfm?id=988740},
    address = {New York, NY, USA},
    isbn = {1-58113-844-X},
    doi = {10.1145/988672.988740}
}

@inproceedings{reis_automatic_2004,
    title = {{Automatic web news extraction using tree edit distance}},
    year = {2004},
    booktitle = {World Wide Web},
    author = {Reis, D C and Golgher, Paulo B and Silva, A S and Laender, a F},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.439.3999&rep=rep1&type=pdf http://portal.acm.org/citation.cfm?doid=988672.988740},
    isbn = {1-58113-844-X},
    doi = {10.1145/988672.988740},
    keywords = {algorithms, data extraction, edit distance, electronic news, languages, schema, schema inference, trees, web}
}

@inproceedings{reis_automatic_2004b,
    title = {{Automatic web news extraction using tree edit distance}},
    year = {2004},
    booktitle = {Proceedings of the 13th international conference on World Wide Web},
    author = {Reis, D C and Golgher, P B and Silva, A S and Laender, A F},
    series = {{\{}WWW{\}} '04},
    publisher = {ACM},
    address = {New York, {\{}NY{\}}, {\{}USA{\}}},
    isbn = {1-58113-844-X},
    doi = {10.1145/988672.988740},
    keywords = {algorithms, data extraction, edit distance, languages, schema inference, web}
}

@article{dalvi_automatic_2011,
    title = {{Automatic wrappers for large scale web extraction}},
    year = {2011},
    journal = {Proceedings of the VLDB Endowment},
    author = {Dalvi, Nilesh and Kumar, Ravi and Soliman, Mohamed},
    month = {1},
    issn = {2150-8097}
}

@article{Pawlowski2016,
    title = {{Automating Morphological Profiling with Generic Deep Convolutional Networks}},
    year = {2016},
    author = {Pawlowski, Nick and Caicedo, Juan C and Singh, Shantanu and Carpenter, Anne E and Storkey, Amos},
    url = {https://www.biorxiv.org/content/biorxiv/early/2016/11/02/085118.full.pdf},
    doi = {10.1101/085118}
}

@article{Agouris2004,
    title = {{Automation and digital photogrammetric workstations}},
    year = {2004},
    journal = {Manual of Photogrammetry},
    author = {Agouris, Peggy and Doucette, Peter and Stefanidis, Anthony},
    pages = {949--981},
    url = {http://afeworks.pbworks.com/f/PAPER+Automation+and+Digital++Photogrammetric+Workstations+Chapter+12_finalproof.pdf}
}

@article{Gao1999,
    title = {{Autowrapper: automatic wrapper generation for multiple online services}},
    shorttitle = {Autowrapper},
    year = {1999},
    author = {Gao, X. and Sterling, L.},
    url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.34.7199}
}

@article{gao_autowrapper:_1999,
    title = {{Autowrapper: automatic wrapper generation for multiple online services}},
    shorttitle = {Autowrapper},
    year = {1999},
    author = {Gao, X and Sterling, L}
}

@inproceedings{Sundararajan2017integrated,
    title = {{Axiomatic Attribution for Deep Networks}},
    year = {2017},
    booktitle = {International Conference on Machine Learning},
    author = {Sundararajan, Mukund and Taly, Ankur and Yan, Qiqi},
    url = {http://arxiv.org/abs/1703.01365},
    arxivId = {1703.01365}
}

@inproceedings{Akritidis2009,
    title = {{Baggy bounds checking: An efficient and backwards-compatible defense against out-of-bounds errors}},
    shorttitle = {Baggy bounds checking},
    year = {2009},
    author = {Akritidis, P. and Costa, M. and Castro, M. and Hand, S.},
    pages = {51–66},
    url = {http://dl.acm.org/citation.cfm?id=1855772}
}

@misc{ref54,
    title = {{Baltus AE, Menke DB, Hu YC, Goodheart ML, Carpenter AE, de Rooij DG, Page DC: In germ cells of mouse embryonic ovaries, the decision to enter meiosis precedes premeiotic DNA replication. Nat Genet.}}
}

@inproceedings{ioffe2015batch,
    title = {{Batch normalization: Accelerating deep network training by reducing internal covariate shift}},
    year = {2015},
    booktitle = {International conference on machine learning},
    author = {Ioffe, Sergey and Szegedy, Christian},
    pages = {448--456}
}

@article{Pearl2002,
    title = {{Becoming a computer scientist}},
    year = {2002},
    journal = {ACM SIGCSE Bulletin},
    author = {Pearl, Amy and Pollack, Martha E. and Riskin, Eve and Thomas, Becky and Wolf, Elizabeth and Wu, Alice},
    number = {2},
    pages = {135–143},
    volume = {34},
    url = {http://dl.acm.org/citation.cfm?id=543847 http://courses.cs.washington.edu/courses/csep590/06au/readings/p135-pearl.pdf}
}

@techreport{Travnickova2020,
    title = {{Benchmarking medical segmentation models with limited training sets}},
    year = {2020},
    author = {Tr{\'{a}}vn{\'{i}}{\v{c}}kov{\'{a}}, Kateřina and Tr{\'{a}}vn{\'{i}}{\v{c}}kov, Tr´ and Tr{\'{a}}vn{\'{i}}{\v{c}}kov{\'{a}}, Trávníčkov´ and Kodym, Oldřich},
    url = {http://excel.fit.vutbr.cz},
    keywords = {Deep learning-, Medical data, Segmentation-}
}

@inproceedings{Borovec2018,
    title = {{Benchmarking of Image Registration Methods for Differently Stained Histological Slides}},
    year = {2018},
    booktitle = {Proceedings - International Conference on Image Processing, ICIP},
    author = {Borovec, Jiri and Munoz-Barrutia, Arrate and Kybic, Jan},
    month = {8},
    pages = {3368--3372},
    publisher = {IEEE Computer Society},
    isbn = {9781479970612},
    doi = {10.1109/ICIP.2018.8451040},
    issn = {15224880},
    keywords = {Benchmarking, Histological slides, Image registration, Pathology, Stained tissue}
}

@inproceedings{Liu2011,
    title = {{Bernoulli Trials Based Feature Selection for Crater Detection Categories and Subject Descriptors}},
    year = {2011},
    booktitle = {International Conference on Advances in Geographic Information Systems},
    author = {Liu, Siyi and Ding, Wei and Cohen, Joseph Paul and Simovici, Dan},
    month = {11},
    pages = {461--464},
    publisher = {ACM},
    url = {http://delivery.acm.org/10.1145/2100000/2094048/p461-liu.pdf?ip=158.121.104.35&id=2094048&acc=ACTIVE SERVICE&key=73B3886B1AEFC4BB.B478147E31829731.4D4702B0C3E38B35.4D4702B0C3E38B35&CFID=560197996&CFTOKEN=53754956&__acm__=1447268032_72534757ebcdeb3c3},
    address = {Chicago, Illinois},
    isbn = {9781450310314},
    doi = {10.1145/2093973.2094048},
    keywords = {classification, feature selection, planetary and space science}
}

@article{Xie2015,
    title = {{Beyond Classification: Structured Regression for Robust Cell Detection Using Convolutional Neural Network.}},
    year = {2015},
    journal = {MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention},
    author = {Xie, Yuanpu and Xing, Fuyong and Kong, Xiangfei and Su, Hai and Yang, Lin},
    publisher = {NIH Public Access},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/28090601 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5226438},
    doi = {10.1007/978-3-319-24574-4{\_}43},
    pmid = {28090601}
}

@inproceedings{Bozorgi2010,
    title = {{Beyond heuristics: learning to classify vulnerabilities and predict exploits}},
    shorttitle = {Beyond heuristics},
    year = {2010},
    author = {Bozorgi, M. and Saul, L.K. and Savage, S. and Voelker, G.M.},
    pages = {105–114},
    url = {http://dl.acm.org/citation.cfm?id=1835821}
}

@article{Busby2018,
    title = {{Bias in radiology: The how and why of misses and misinterpretations}},
    year = {2018},
    journal = {Radiographics},
    author = {Busby, Lindsay P. and Courtier, Jesse L. and Glastonbury, Christine M.},
    number = {1},
    month = {1},
    pages = {236--247},
    volume = {38},
    publisher = {Radiological Society of North America Inc.},
    doi = {10.1148/rg.2018170107},
    issn = {15271323}
}

@inproceedings{Hotho2006,
    title = {{BibSonomy: A Social Bookmark and Publication Sharing System}},
    year = {2006},
    booktitle = {Proceedings of the First Conceptual Structures Tool Interoperability Workshop at the 14th International Conference on Conceptual Structures},
    author = {Hotho, Andreas and J{\"{a}}schke, Robert and Schmitz, Christoph and Stumme, Gerd},
    url = {http://www.kde.cs.uni-kassel.de http://www.l3s.de}
}

@article{Jagannatha2016,
    title = {{Bidirectional RNN for Medical Event Detection in Electronic Health Records}},
    year = {2016},
    journal = {Naacl2016},
    author = {Jagannatha, Abhyuday N and Yu, Hong},
    month = {6},
    publisher = {NIH Public Access},
    url = {http://www.aclweb.org/anthology/N16-1056 http://www.ncbi.nlm.nih.gov/pubmed/27885364 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5119627},
    isbn = {9781941643914},
    doi = {10.1111/obr.12065.Variation},
    issn = {1527-5418},
    pmid = {27885364},
    arxivId = {arXiv:1606.07953v1}
}

@article{Keen2013,
    title = {{Big data {\{}+{\}} politics = open data: The case of health care data in England}},
    year = {2013},
    journal = {Policy and Internet},
    author = {Keen, Justin and Calinescu, Radu and Paige, Richard and Rooksby, John},
    number = {2},
    month = {6},
    pages = {228--243},
    volume = {5},
    publisher = {John Wiley {\&} Sons, Ltd},
    url = {http://doi.wiley.com/10.1002/1944-2866.POI330},
    doi = {10.1002/1944-2866.POI330},
    issn = {19442866},
    keywords = {Big Data, Open Data, health care, information technologies}
}

@article{DeLaIglesiaVaya2020BIMCVCOVID-19,
    title = {{BIMCV COVID-19+: a large annotated dataset of RX and CT images from COVID-19 patients}},
    year = {2020},
    journal = {arXiv:2006.01174},
    author = {De La Iglesia Vay{\'{a}}, Maria and Saborit, Jose Manuel and Montell, Joaquim Angel and Pertusa, Antonio and Bustos, Aurelia and Cazorla, Miguel and Galant, Joaquin and Barber, Xavier and Orozco-Beltr{\'{a}}n, Domingo and Garcia, Francisco and Caparr{\'{o}}s, Marisa and Gonz{\'{a}}lez, Germán and Salinas, Jose María},
    arxivId = {2006.01174}
}

@article{courbariaux2016binarized,
    title = {{Binarized neural networks: Training deep neural networks with weights and activations constrained to+ 1 or-1}},
    year = {2016},
    journal = {arXiv preprint arXiv:1602.02830},
    author = {Courbariaux, Matthieu and Hubara, Itay and Soudry, Daniel and El-Yaniv, Ran and Bengio, Yoshua}
}

@misc{ref51,
    title = {{BioImageA/S: Assay Application Note 21: Image analysis using Definiens Cellenger, Version 1. January 2005.}}
}

@inproceedings{Calimeri2017,
    title = {{Biomedical Data Augmentation using Generative Adversarial Neural Networks}},
    year = {2017},
    booktitle = {International Conference on Artificial Neural Networks (ICANN)},
    author = {Calimeri, Francesco and Marzullo, Aldo and Stamile, Claudio and Terracina, Giorgio},
    url = {http://link.springer.com/10.1007/978-3-319-68612-7_71},
    isbn = {9783319686110},
    doi = {10.1007/978-3-319-68612-7},
    issn = {16113349},
    keywords = {Guaranteed risks, Margin multi-category classifiers, Metric entropy, Rademacher complexity}
}

@misc{Carreiras2015,
    title = {{BioSPPy: Biosignal Processing in Python}},
    year = {2015},
    author = {Carreiras, Carlos and Alves, Ana Priscila and Louren{\c{c}}o, André and Canento, Filipe and Silva, Hugo and Fred, Ana and {others}},
    url = {https://github.com/PIA-Group/BioSPPy/}
}

@article{Langille2010,
    title = {{BioTorrents: A File Sharing Service for Scientific Data}},
    shorttitle = {BioTorrents},
    year = {2010},
    journal = {PLoS ONE},
    author = {Langille, Morgan G. I. and Eisen, Jonathan A.},
    month = {4},
    url = {http://dx.doi.org/10.1371/journal.pone.0010071 http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0010071&representation=PDF http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0010071},
    doi = {10.1371/journal.pone.0010071}
}

@misc{Cohen2015,
    title = {{BlindTool – A mobile app that gives a "sense of vision" to the blind with deep learning}},
    year = {2015},
    author = {Cohen, Joseph Paul},
    url = {https://github.com/ieee8023/blindtool}
}

@misc{Cohen2012b,
    title = {{blucat}},
    year = {2012},
    author = {Cohen, Joseph Paul},
    url = {http://blucat.sourceforge.net/}
}

@inproceedings{Freitag2000,
    title = {{Boosted wrapper induction}},
    year = {2000},
    author = {Freitag, D. and Kushmerick, N.},
    pages = {577–583},
    url = {http://www.aaai.org/Papers/AAAI/2000/AAAI00-088.pdf}
}

@inproceedings{freitag_boosted_2000,
    title = {{Boosted wrapper induction}},
    year = {2000},
    booktitle = {Proceedings Of The National Conference On Artificial Intelligence},
    author = {Freitag, D and Kushmerick, N}
}

@inproceedings{Dai2007,
    title = {{Boosting for Transfer Learning}},
    year = {2007},
    author = {Dai, Wenyuan and Yang, Qiang and Xue, Gui-Rong and Yu, Yong},
    pages = {193–200},
    series = {ICML '07},
    publisher = {ACM},
    url = {http://dl.acm.org/ft_gateway.cfm?id=1273521&type=pdf},
    address = {New York, NY, USA},
    isbn = {978-1-59593-793-3},
    doi = {10.1145/1273496.1273521}
}

@inproceedings{dai_boosting_2007,
    title = {{Boosting for {\{}Transfer{\}} {\{}Learning{\}}}},
    year = {2007},
    booktitle = {Proceedings of the 24th {\{}International{\}} {\{}Conference{\}} on {\{}Machine{\}} {\{}Learning{\}}},
    author = {Dai, Wenyuan and Yang, Qiang and Xue, Gui-Rong and Yu, Yong},
    pages = {193--200},
    series = {{\{}ICML{\}} '07},
    publisher = {ACM},
    address = {New York, NY, USA},
    isbn = {978-1-59593-793-3},
    doi = {10.1145/1273496.1273521}
}

@inproceedings{Arbelaez2006,
    title = {{Boundary extraction in natural images using ultrametric contour maps}},
    year = {2006},
    author = {Arbelaez, Pablo},
    pages = {182–182},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1640630 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1640630&abstractAccess=no&userType=inst http://www.eecs.berkeley.edu/~arbelaez/publications/Arbelaez_POCV06.pdf}
}

@misc{GovernmentComputerNewGCN2012,
    title = {{Budget reflects shift in Scientific R{\&}D, Education}},
    year = {2012},
    author = {{Government Computer New(GCN)}},
    month = {2},
    url = {http://gcn.com/Articles/2012/02/13/2013-budget-science-technology-research-funding.aspx?Page=1}
}

@article{Lin1998,
    title = {{Building Detection and Description from a Single Intensity Image}},
    year = {1998},
    journal = {Computer Vision and Image Understanding},
    author = {Lin, Chungan and Nevatia, Ramakant},
    number = {2},
    month = {11},
    pages = {101--121},
    volume = {72},
    url = {http://www.sciencedirect.com/science/article/pii/S107731429890724X http://iris.usc.edu/outlines/papers/1998/lin-cviu98.pdf http://www.sciencedirect.com/science/article/pii/S107731429890724X?np=y},
    doi = {10.1006/cviu.1998.0724},
    issn = {1077-3142}
}

@article{Paparoditis1998,
    title = {{Building Detection and Reconstruction from Mid- and High-Resolution Aerial Imagery}},
    year = {1998},
    journal = {Computer Vision and Image Understanding},
    author = {Paparoditis, N. and Cord, M. and Jordan, M. and Cocquerez, J.-P.},
    number = {2},
    month = {11},
    pages = {122--142},
    volume = {72},
    url = {http://www.sciencedirect.com/science/article/pii/S1077314298907226 http://www.sciencedirect.com/science/article/pii/S1077314298907226# http://www.sciencedirect.com/science/article/pii/S1077314298907226/pdf?md5=2927b8be9d7722dd3cb15947902909bf&pid=1-s2.0-S},
    doi = {10.1006/cviu.1998.0722},
    issn = {1077-3142}
}

@article{Fradkin2001,
    title = {{Building detection from multiple aerial images in dense urban areas}},
    year = {2001},
    journal = {Computer Vision and Image Understanding},
    author = {Fradkin, M. and Maıtre, H. and Roux, Michel},
    number = {3},
    pages = {181–207},
    volume = {82},
    url = {http://www.sciencedirect.com/science/article/pii/S1077314201909178}
}

@inproceedings{Sirmacek2009,
    title = {{Building detection using local Gabor features in very high resolution satellite images}},
    year = {2009},
    author = {Sirmacek, B. and Unsalan, Cem},
    pages = {283--286},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5158213 http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.157.9061&rep=rep1&type=pdf http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5158213&abstractAccess=no&userType=inst}
}

@techreport{Le2012,
    title = {{Building High-level Features Using Large Scale Unsupervised Learning}},
    year = {2012},
    author = {Le, Quoc V and Ranzato, Marc ' Aurelio and Monga, Rajat and Devin, Matthieu and Chen, Kai and Corrado, Greg S and Dean, Jeff and Ng, Andrew Y},
    url = {http://opencv.willowgarage.com/wiki/},
    arxivId = {1112.6209v5}
}

@article{Sahuguet2001,
    title = {{Building intelligent web applications using lightweight wrappers}},
    year = {2001},
    journal = {Data {\&} Knowledge Engineering},
    author = {Sahuguet, A. and Azavant, F.},
    number = {3},
    pages = {283–316},
    volume = {36},
    url = {http://www.sciencedirect.com/science/article/pii/S0169023X00000513}
}

@article{sahuguet_building_2001,
    title = {{Building intelligent web applications using lightweight wrappers}},
    year = {2001},
    journal = {Data {\&} Knowledge Engineering},
    author = {Sahuguet, A and Azavant, F}
}

@inproceedings{Sahuguet1999,
    title = {{Building light-weight wrappers for legacy web data-sources using W4F}},
    year = {1999},
    author = {Sahuguet, A. and Azavant, F.},
    pages = {738–741},
    url = {http://www.fing.edu.uy/inco/grupos/csi/esp/Cursos/cursos_posg/Inter2002/presentaciones/trabajosEstudiantes/InformeGrupo7.doc}
}

@inproceedings{sahuguet_building_1999,
    title = {{Building light-weight wrappers for legacy web data-sources using W4F}},
    year = {1999},
    booktitle = {International Conference on Very Large Data Bases},
    author = {Sahuguet, A and Azavant, F}
}

@article{Ortner2007,
    title = {{Building outline extraction from digital elevation models using marked point processes}},
    year = {2007},
    journal = {International Journal of Computer Vision},
    author = {Ortner, Mathias and Descombes, Xavier and Zerubia, Josiane},
    number = {2},
    pages = {107–132},
    volume = {72},
    url = {http://link.springer.com/article/10.1007/s11263-005-5033-7 http://www-sop.inria.fr/ariana/personnel/Mathias.Ortner/publications/ijcv_cnrs.pdf}
}

@inproceedings{Krohn2004,
    title = {{Building secure high-performance web services with OKWS}},
    year = {2004},
    author = {Krohn, M.},
    pages = {15–15},
    url = {http://dl.acm.org/citation.cfm?id=1247430}
}

@misc{Prigogin2012,
    title = {{C++ Refactoring – Now for Real}},
    year = {2012},
    author = {Prigogin, Sergey},
    url = {http://wiki.eclipse.org/images/a/a1/C%2B%2B_Refactoring_-_Now_for_Real.pdf}
}

@techreport{Oza,
    title = {{C2AE: Class Conditioned Auto-Encoder for Open-set Recognition}},
    author = {Oza, Poojan and Patel, Vishal M},
    url = {http://openaccess.thecvf.com/content_CVPR_2019/papers/Oza_C2AE_Class_Conditioned_Auto-Encoder_for_Open-Set_Recognition_CVPR_2019_paper.pdf}
}

@book{Quinlan1993,
    title = {{C4.5: Programs for Machine Learning}},
    shorttitle = {C4.5},
    year = {1993},
    author = {Quinlan, J. Ross},
    publisher = {Morgan Kaufmann Publishers Inc.},
    address = {San Francisco, CA, USA},
    isbn = {978-1-55860-240-3}
}

@article{caffe,
    title = {{Caffe: Convolutional Architecture for Fast Feature Embedding}},
    shorttitle = {Caffe},
    year = {2014},
    journal = {Proceedings of the ACM International Conference on Multimedia},
    author = {Jia, Yangqing and Shelhamer, Evan and Donahue, Jeff and Karayev, Sergey and Long, Jonathan and Girshick, Ross and Guadarrama, Sergio and Darrell, Trevor},
    url = {http://dl.acm.org/citation.cfm?id=2654889 http://arxiv.org/pdf/1408.5093 http://arxiv.org/abs/1408.5093},
    isbn = {9781450330633},
    doi = {10.1145/2647868.2654889},
    issn = {10636919},
    arxivId = {1408.5093},
    keywords = {computation, computer vision, corresponding authors, machine learning, neural networks, open source, parallel}
}

@article{Lazebnik2004,
    title = {{Can a biologist fix a radio, or what I learned while studying apoptosis}},
    year = {2004},
    journal = {Biochemistry},
    author = {Lazebnik, Iu and Papermaster, David and Gall, Joe},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/15627398},
    issn = {1561-9125},
    pmid = {14743614},
    keywords = {Apoptosis, Biological, Biomedical Research, Interdisciplinary Communication, Models, Radio, Radio: instrumentation}
}

@article{Putha2018CQ100k,
    title = {{Can Artificial Intelligence Reliably Report Chest X-Rays?: Radiologist Validation of an Algorithm trained on 2.3 Million X-Rays}},
    year = {2018},
    journal = {arxiv},
    author = {Putha, Preetham and Tadepalli, Manoj and Reddy, Bhargava and Raj, Tarun and Chiramal, Justy Antony and Govil, Shalini and Sinha, Namita and KS, Manjunath and Reddivari, Sundeep and Jagirdar, Ammar and Rao, Pooja and Warier, Prashant},
    month = {7},
    url = {http://arxiv.org/abs/1807.07455},
    arxivId = {1807.07455}
}

@misc{10.1148/radiol.2020200847,
    title = {{Can Lung US Help Critical Care Clinicians in the Early Diagnosis of Novel Coronavirus (COVID-19) Pneumonia?}},
    year = {2020},
    booktitle = {Radiology},
    author = {Poggiali, Erika and Dacrema, Alessandro and Bastoni, Davide and Tinelli, Valentina and Demichele, Elena and Mateo Ramos, Pau and Marcian{\`{o}}, Teodoro and Silva, Matteo and Vercelli, Andrea and Magnacavallo, Andrea},
    month = {6},
    pages = {200847},
    publisher = {NLM (Medline)},
    doi = {10.1148/radiol.2020200847},
    issn = {15271315},
    pmid = {32167853}
}

@inproceedings{Vollmer2017,
    title = {{Can Supervised Learning Be Used to Classify Cardiac Rhythms?}},
    year = {2018},
    booktitle = {2017 Computing in Cardiology Conference (CinC)},
    author = {Vollmer, Marcus and Sodmann, Philipp and Caanitz, Leonard and Nath, Neetika and Kaderali, Lars},
    volume = {44},
    url = {http://www.cinc.org/archives/2017/pdf/347-176.pdf},
    doi = {10.22489/cinc.2017.347-176}
}

@article{Pooch2019,
    title = {{Can we trust deep learning models diagnosis? The impact of domain shift in chest radiograph classification}},
    year = {2019},
    journal = {arXiv:1909.01940},
    author = {Pooch, Eduardo H. P. and Ballester, Pedro L. and Barros, Rodrigo C.},
    month = {9},
    url = {http://arxiv.org/abs/1909.01940},
    arxivId = {1909.01940}
}

@misc{CAR2020COVIDStatement,
    title = {{Canadian Society of Thoracic Radiology/Canadian Association of Radiologists Consensus Statement Regarding Chest Imaging in Suspected and Confirmed COVID-19}},
    year = {2020},
    booktitle = {Canadian Association of Radiologists Journal},
    author = {Dennie, Carole and Hague, Cameron and Lim, Robert S. and Manos, Daria and Memauri, Brett F. and Nguyen, Elsie T. and Taylor, Jana},
    publisher = {SAGE Publications Inc.},
    url = {http://journals.sagepub.com/doi/10.1177/0846537120924606},
    doi = {10.1177/0846537120924606},
    issn = {14882361},
    pmid = {32380844},
    keywords = {COVID-19, chest computed tomography, chest radiograph, infection, lung ultrasound, pneumonia}
}

@misc{kokhlikyan2020captum,
    title = {{Captum: A unified and generic model interpretability library for PyTorch}},
    year = {2020},
    author = {Kokhlikyan, Narine and Miglani, Vivek and Martin, Miguel and Wang, Edward and Alsallakh, Bilal and Reynolds, Jonathan and Melnikov, Alexander and Kliushkina, Natalia and Araya, Carlos and Yan, Siqi and Reblitz-Richardson, Orion},
    arxivId = {cs.LG/2009.07896}
}

@article{Sivaguru2012,
    title = {{Capturing the surface texture and shape of Pollen: A comparison of microscopy techniques}},
    year = {2012},
    journal = {PLoS ONE},
    author = {Sivaguru, Mayandi and Mander, Luke and Fried, Glenn and Punyasena, Surangi W.},
    editor = {Marcus, Adam I.},
    number = {6},
    month = {6},
    pages = {e39129},
    volume = {7},
    url = {http://dx.plos.org/10.1371/journal.pone.0039129},
    doi = {10.1371/journal.pone.0039129},
    issn = {19326203},
    pmid = {22720050}
}

@inproceedings{Song2017,
    title = {{Cardiac Scan: A Non-Contact and Continuous Heart-Based User Authentication System}},
    year = {2017},
    booktitle = {International Conference on Mobile Computing and Networking},
    author = {Song, Chen and Lin, Feng and Zhuang, Yan and Xu, Wenyao and Li, Changzhi and Ren, Kui},
    url = {https://sctracy.github.io/chensong.github.io/pdf/mobicom17.pdf},
    isbn = {9781450311694},
    keywords = {D28 [Software Engineering]: Metrics-complexity mea, Doppler radar, H4 [Information Systems Applications]: Miscella-ne, continuous authentication, performance measures Keywords Cardiac motion}
}

@article{Hannun2019,
    title = {{Cardiologist-level arrhythmia detection and classification in ambulatory electrocardiograms using a deep neural network}},
    year = {2019},
    journal = {Nature Medicine},
    author = {Hannun, Awni Y. and Rajpurkar, Pranav and Haghpanahi, Masoumeh and Tison, Geoffrey H. and Bourn, Codie and Turakhia, Mintu P. and Ng, Andrew Y.},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/30617320 http://www.nature.com/articles/s41591-018-0268-3},
    doi = {10.1038/s41591-018-0268-3},
    issn = {1078-8956},
    pmid = {30617320}
}

@article{Rajpurkar2017cardio,
    title = {{Cardiologist-Level Arrhythmia Detection with Convolutional Neural Networks}},
    year = {2017},
    author = {Rajpurkar, Pranav and Hannun, Awni Y. and Haghpanahi, Masoumeh and Bourn, Codie and Ng, Andrew Y.},
    month = {7},
    url = {http://arxiv.org/abs/1707.01836},
    arxivId = {1707.01836}
}

@article{Zaman2007,
    title = {{Cardiothoracic ratio within the "normal" range independently predicts mortality in patients undergoing coronary angiography}},
    year = {2007},
    journal = {Heart},
    author = {Zaman, Justin M. and Sanders, Julie and Crook, Angela M. and Feder, Gene and Shipley, Martin and Timmis, Adam and Hemingway, Harry},
    number = {4},
    month = {4},
    pages = {491--494},
    volume = {93},
    doi = {10.1136/hrt.2006.101238},
    issn = {13556037}
}

@article{Guo2020,
    title = {{Cardiovascular Implications of Fatal Outcomes of Patients with Coronavirus Disease 2019 (COVID-19)}},
    year = {2020},
    journal = {JAMA Cardiology},
    author = {Guo, Tao and Fan, Yongzhen and Chen, Ming and Wu, Xiaoyan and Zhang, Lin and He, Tao and Wang, Hairong and Wan, Jing and Wang, Xinghuan and Lu, Zhibing},
    number = {7},
    month = {7},
    pages = {811--818},
    volume = {5},
    publisher = {American Medical Association},
    url = {https://jamanetwork.com/},
    doi = {10.1001/jamacardio.2020.1017},
    issn = {23806591},
    pmid = {32219356},
    keywords = {The JAMA Network}
}

@techreport{Zhuang2019,
    title = {{CARE: Class Attention to Regions of Lesion for Classification on Imbalanced Data}},
    year = {2019},
    booktitle = {Medical Imaging with Deep Learning},
    author = {Zhuang, Jiaxin and Cai, Jiabin and Wang, Ruixuan and Zhang, Jianguo and Weishi Zheng, Dundeeacuk},
    pages = {588--597},
    volume = {102},
    url = {http://proceedings.mlr.press/v102/zhuang19a/zhuang19a.pdf},
    keywords = {Attention, Imbalanced Data, Pneumonia Chest X-ray, Skin Lesion, Small Samples}
}

@misc{ref61,
    title = {{Carl Zeiss MicroImaging Gallery. [http://www.zeiss.com/C12567BE0045ACF1/Contents-Frame/FDE18DAAE4583A5CC1256C3D004831FF]}},
    url = {http://www.zeiss.com/C12567BE0045ACF1/Contents-Frame/FDE18DAAE4583A5CC1256C3D004831FF}
}

@article{10.1016/S2213-26002030076-X,
    title = {{Case Report Pathological findings of COVID-19 associated with acute respiratory distress syndrome}},
    year = {2020},
    journal = {The Lancet Respiratory},
    author = {Xu, Z and Shi, L and Zhang, J and Huang, L and Zhang, C and Liu Bsc, H and Song, J and Wang, F-S and Wang, Y and Tai, Y and Zhao, J and Wang, Fu-Sheng and Zhao, Jingmin and Xu, Zhe and Shi, Lei and Wang, Yijin and Zhang, Jiyuan and Huang, Lei and Zhang, Chao and Liu, Shuhong and Zhao, Peng and Liu, Hongxia and Zhu, Li and Tai, Yanhong and Bai, Changqing and Gao, Tingting and Song, Jinwen and Xia, Peng and Dong, Jinghui},
    pages = {420--422},
    volume = {8},
    url = {https://doi.org/10.1016/},
    doi = {10.1016/S2213-2600(20)30076-X}
}

@inproceedings{Jesson2017,
    title = {{CASED: Curriculum Adaptive Sampling for Extreme Data Imbalance}},
    year = {2017},
    booktitle = {Medical Image Computing and Computer Assisted Intervention},
    author = {Jesson, Andrew and Guizard, Nicolas and Ghalehjegh, Sina Hamidi and Goblot, Damien and Soudan, Florian and Chapados, Nicolas},
    month = {9},
    publisher = {Springer, Cham},
    url = {http://link.springer.com/10.1007/978-3-319-66179-7_73},
    doi = {10.1007/978-3-319-66179-7{\_}73}
}

@article{Sachs2005,
    title = {{Causal protein-signaling networks derived from multiparameter single-cell data.}},
    year = {2005},
    journal = {Science},
    author = {Sachs, K and Perez, O and Pe'er, D and Lauffenburger, D A and Nolan, G P},
    volume = {308},
    url = {http://dx.doi.org/10.1126/science.1105809},
    doi = {10.1126/science.1105809}
}

@article{Castro2019,
    title = {{Causality matters in medical imaging}},
    year = {2019},
    author = {Castro, Daniel C. and Walker, Ian and Glocker, Ben},
    month = {12},
    url = {http://arxiv.org/abs/1912.08142},
    arxivId = {1912.08142}
}

@article{Bray2016a,
    title = {{Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes}},
    year = {2016},
    journal = {Nature Protocols},
    author = {Bray, Mark-Anthony and Singh, Shantanu and Han, Han and Davis, Chadwick T and Borgeson, Blake and Hartland, Cathy and Kost-Alimova, Maria and Gustafsdottir, Sigrun M and Gibson, Christopher C and Carpenter, Anne E},
    number = {9},
    month = {8},
    pages = {1757--1774},
    volume = {11},
    url = {http://www.nature.com/doifinder/10.1038/nprot.2016.105},
    doi = {10.1038/nprot.2016.105},
    issn = {1754-2189}
}

@article{Carpenter2006,
    title = {{CellProfiler: image analysis software for identifying and quantifying cell phenotypes}},
    year = {2006},
    journal = {Genome Biology},
    author = {Carpenter, Anne E and Jones, Thouis R and Lamprecht, Michael R and Clarke, Colin and Kang, In Han and Friman, Ola and Guertin, David A and Chang, Joo Han and Lindquist, Robert A and Moffat, Jason and Golland, Polina and Sabatini, David M},
    month = {10},
    url = {http://dx.doi.org/10.1186/gb-2006-7-10-r100},
    doi = {10.1186/gb-2006-7-10-r100},
    issn = {1474-760X}
}

@inproceedings{Cheung2011,
    title = {{Challenge Based Learning in Cybersecurity Education}},
    year = {2011},
    author = {Cheung, Ronald S. and Cohen, Joseph Paul and Lo, Henry Z. and Elia, Fabio},
    month = {7},
    volume = {1},
    publisher = {SAM 2011},
    address = {Las Vegas, Nevada, USA}
}

@incollection{Floca2014,
    title = {{Challenges of Open Data in Medical Research}},
    year = {2014},
    booktitle = {Opening Science},
    author = {Floca, Ralf},
    pages = {297--307},
    publisher = {Springer International Publishing},
    doi = {10.1007/978-3-319-00026-8{\_}22}
}

@article{Xian2011,
    title = {{Change of impervious surface area between 2001 and 2006 in the conterminous United States}},
    year = {2011},
    journal = {Photogrammetric engineering and remote sensing},
    author = {Xian, George and Homer, Collin and Demitz, Jon and Fry, Joyce and Hossain, Nazmul and Wickham, James},
    number = {8},
    pages = {758–762},
    volume = {77},
    url = {http://cat.inist.fr/?aModele=afficheN&cpsidt=24406398}
}

@article{Porter1975,
    title = {{Changes in cell topography associated with transformation to malignancy.}},
    year = {1975},
    journal = {Adv Pathobiol},
    author = {Porter, K R},
    volume = {1}
}

@article{Yang2020,
    title = {{Chest CT Severity Score: An Imaging Tool for Assessing Severe COVID-19}},
    year = {2020},
    journal = {Radiology: Cardiothoracic Imaging},
    author = {Yang, Ran and Li, Xiang and Liu, Huan and Zhen, Yanling and Zhang, Xianxiang and Xiong, Qiuxia and Luo, Yong and Gao, Cailiang and Zeng, Wenbing},
    number = {2},
    month = {4},
    pages = {e200047},
    volume = {2},
    publisher = {Radiological Society of North America (RSNA)},
    url = {http://pubs.rsna.org/doi/10.1148/ryct.2020200047},
    doi = {10.1148/ryct.2020200047},
    issn = {2638-6135}
}

@article{Majkowska2019,
    title = {{Chest Radiograph Interpretation with Deep Learning Models: Assessment with Radiologist-adjudicated Reference Standards and Population-adjusted Evaluation}},
    year = {2019},
    journal = {Radiology},
    author = {Majkowska, Anna and Mittal, Sid and Steiner, David F. and Reicher, Joshua J. and McKinney, Scott Mayer and Duggan, Gavin E. and Eswaran, Krish and Cameron Chen, Po-Hsuan and Liu, Yun and Kalidindi, Sreenivasa Raju and Ding, Alexander and Corrado, Greg S. and Tse, Daniel and Shetty, Shravya},
    url = {http://pubs.rsna.org/doi/10.1148/radiol.2019191293},
    doi = {10.1148/radiol.2019191293}
}

@article{Syeda-Mahmood2020,
    title = {{Chest X-ray Report Generation through Fine-Grained Label Learning}},
    year = {2020},
    author = {Syeda-Mahmood, Tanveer and Wong, Ken C. L. and Gur, Yaniv and Wu, Joy T. and Jadhav, Ashutosh and Kashyap, Satyananda and Karargyris, Alexandros and Pillai, Anup and Sharma, Arjun and Syed, Ali Bin and Boyko, Orest and Moradi, Mehdi},
    month = {7},
    pages = {561--571},
    url = {http://arxiv.org/abs/2007.13831},
    arxivId = {2007.13831}
}

@article{10.1016/j.ijid.2020.05.021,
    title = {{Chest X-ray severity index as a predictor of in-hospital mortality in coronavirus disease 2019: A study of 302 patients from Italy}},
    year = {2020},
    journal = {International Journal of Infectious Diseases},
    author = {Borghesi, Andrea and Zigliani, Angelo and Golemi, Salvatore and Carapella, Nicola and Maculotti, Patrizia and Farina, Davide and Maroldi, Roberto},
    month = {5},
    publisher = {Elsevier BV},
    doi = {10.1016/j.ijid.2020.05.021},
    issn = {12019712},
    pmid = {32437939}
}

@article{Cohen2019Chester,
    title = {{Chester: A Web Delivered Locally Computed Chest X-Ray Disease Prediction System}},
    year = {2019},
    journal = {arXiv:1901.11210},
    author = {Cohen, Joseph Paul and Bertin, Paul and Frappier, Vincent},
    url = {http://arxiv.org/abs/1901.11210},
    arxivId = {1901.11210}
}

@inproceedings{WangNIH2017,
    title = {{ChestX-ray8: Hospital-scale Chest X-ray Database and Benchmarks on Weakly-Supervised Classification and Localization of Common Thorax Diseases}},
    year = {2017},
    booktitle = {Computer Vision and Pattern Recognition},
    author = {Wang, Xiaosong and Peng, Yifan and Lu, Le and Lu, Zhiyong and Bagheri, Mohammadhadi and Summers, Ronald M.},
    url = {http://arxiv.org/abs/1705.02315},
    doi = {10.1109/CVPR.2017.369},
    arxivId = {1705.02315}
}

@inproceedings{Seyyed-Kalantari2020CheXclusion,
    title = {{CheXclusion: Fairness gaps in deep chest X-ray classifiers}},
    year = {2021},
    booktitle = {Pacific Symposium on Biocomputing},
    author = {Seyyed-Kalantari, Laleh and Liu, Guanxiong and McDermott, Matthew and Ghassemi, Marzyeh},
    url = {http://arxiv.org/abs/2003.00827},
    arxivId = {2003.00827}
}

@article{Rajpurkar2017chexnet,
    title = {{CheXNet: Radiologist-Level Pneumonia Detection on Chest X-Rays with Deep Learning}},
    year = {2017},
    journal = {arxiv},
    author = {Rajpurkar, Pranav and Irvin, Jeremy and Zhu, Kaylie and Yang, Brandon and Mehta, Hershel and Duan, Tony and Ding, Daisy and Bagul, Aarti and Langlotz, Curtis and Shpanskaya, Katie and Lungren, Matthew P. and Ng, Andrew Y.},
    month = {11},
    url = {http://arxiv.org/abs/1711.05225},
    arxivId = {1711.05225}
}

@article{Rajpurkar2020,
    title = {{CheXpedition: Investigating Generalization Challenges for Translation of Chest X-Ray Algorithms to the Clinical Setting}},
    year = {2020},
    author = {Rajpurkar, Pranav and Joshi, Anirudh and Pareek, Anuj and Chen, Phil and Kiani, Amirhossein and Irvin, Jeremy and Ng, Andrew Y. and Lungren, Matthew P.},
    month = {2},
    url = {http://arxiv.org/abs/2002.11379},
    arxivId = {2002.11379}
}

@inproceedings{Irvin2019CheXpert,
    title = {{CheXpert: A Large Chest Radiograph Dataset with Uncertainty Labels and Expert Comparison}},
    year = {2019},
    booktitle = {AAAI Conference on Artificial Intelligence},
    author = {Irvin, Jeremy and Rajpurkar, Pranav and Ko, Michael and Yu, Yifan and Ciurea-Ilcus, Silviana and Chute, Chris and Marklund, Henrik and Haghgoo, Behzad and Ball, Robyn and Shpanskaya, Katie and Seekins, Jayne and Mong, David A. and Halabi, Safwan S. and Sandberg, Jesse K. and Jones, Ricky and Larson, David B. and Langlotz, Curtis P. and Patel, Bhavik N. and Lungren, Matthew P. and Ng, Andrew Y.},
    url = {http://arxiv.org/abs/1901.07031},
    arxivId = {1901.07031}
}

@misc{Wilson2020,
    title = {{Children in Spain allowed to play outdoors as country eases COVID-19 lockdown}},
    year = {2020},
    booktitle = {Global News},
    author = {Wilson, Joseph and Moulson, Geir},
    url = {https://globalnews.ca/news/6869737/coronavirus-spain-children-outdoor-play/}
}

@misc{Simonite2020,
    title = {{Chinese Hospitals Deploy AI to Help Diagnose COVID-19}},
    year = {2020},
    booktitle = {Wired Magazine},
    author = {Simonite, Tom},
    month = {2},
    url = {https://www.wired.com/story/chinese-hospitals-deploy-ai-help-diagnose-covid-19/}
}

@article{PMID96442,
    title = {{Chromosomal locations of mouse immunoglobulin genes.}},
    year = {1978},
    journal = {Proceedings of the National Academy of Sciences of the United States of America},
    author = {Valbuena, O and Marcu, K B and Croce, C M and Huebner, K and Weigert, M and Perry, R P},
    number = {6},
    month = {6},
    pages = {2883--7},
    volume = {75},
    publisher = {National Academy of Sciences},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/96442 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC392669},
    issn = {0027-8424},
    pmid = {96442}
}

@article{Eysenbach2006,
    title = {{Citation Advantage of Open Access Articles}},
    year = {2006},
    journal = {PLoS Biology},
    author = {Eysenbach, Gunther},
    number = {5},
    pages = {e157},
    volume = {4},
    url = {http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0040157},
    doi = {10.1371/journal.pbio.0040157},
    issn = {1544-9173, 1545-7885},
    language = {en}
}

@inproceedings{Lu2018,
    title = {{Class-Agnostic Counting}},
    year = {2018},
    booktitle = {Asian Conference on Computer Vision (ACCV)},
    author = {Lu, Erika and Xie, Weidi and Zisserman, Andrew},
    url = {http://arxiv.org/abs/1811.00472},
    arxivId = {1811.00472}
}

@article{Lee2003,
    title = {{Class-guided building extraction from Ikonos imagery}},
    year = {2003},
    journal = {Photogrammetric Engineering and Remote Sensing},
    author = {Lee, D. Scott and Shan, Jie and Bethel, James S.},
    number = {2},
    pages = {143–150},
    volume = {69},
    url = {http://asprs.org/a/publications/pers/2003journal/february/2003_feb_143-150.pdf}
}

@article{Ozturk2014,
    title = {{Classification of Fungus Spore Images Using Ridgelet Transform and ANN}},
    year = {2014},
    journal = {avestia.com},
    author = {{\"{O}}zt{\"{u}}rk, Ayşe Elif and Alkan, Sinan and {\"{O}}zt{\"{u}}rk, Celaleddin},
    number = {130},
    pages = {1--7},
    url = {http://avestia.com/MVML2014_Proceedings/papers/130.pdf},
    keywords = {artificial neural network, classification, fungus images, ridgelet transform}
}

@inproceedings{Levchenko2011,
    title = {{Click Trajectories: End-to-End Analysis of the Spam Value Chain}},
    shorttitle = {Click Trajectories},
    year = {2011},
    author = {Levchenko, K. and Pitsillidis, A. and Chachra, N. and Enright, B. and F{\'{e}}legyh{\'{a}}zi, M. and Grier, C. and Halvorson, T. and Kanich, C. and Kreibich, C. and Liu, H. and {others}}
}

@book{Houghton2001,
    title = {{Climate change 2001: the scientific basis}},
    shorttitle = {Climate change 2001},
    year = {2001},
    author = {Houghton, John Theodore and Ding, YDJG and Griggs, David J. and Noguer, Maria and van der LINDEN, Paul J. and Dai, Xiaosu and Maskell, Kathy and Johnson, C. A.},
    volume = {881},
    publisher = {Cambridge university press Cambridge},
    url = {http://www.acrim.com/%5C/Reference Files/CLIMATECHANGE 2001 - The Scientific Basis.pdf}
}

@article{Toussie2020,
    title = {{Clinical and Chest Radiography Features Determine Patient Outcomes In Young and Middle Age Adults with COVID-19}},
    year = {2020},
    journal = {Radiology},
    author = {Toussie, Danielle and Voutsinas, Nicholas and Finkelstein, Mark and Cedillo, Mario A and Manna, Sayan and Maron, Samuel Z and Jacobi, Adam and Chung, Michael and Bernheim, Adam and Eber, Corey and Concepcion, Jose and Fayad, Zahi and Gupta, Yogesh Sean},
    month = {5},
    pages = {201754},
    publisher = {Radiological Society of North America},
    url = {http://pubs.rsna.org/doi/10.1148/radiol.2020201754},
    doi = {10.1148/radiol.2020201754},
    issn = {0033-8419}
}

@article{Tian2019,
    title = {{Clustering single-cell RNA-seq data with a model-based deep learning approach}},
    year = {2019},
    journal = {Nature Machine Intelligence},
    author = {Tian, Tian and Wan, Ji and Song, Qi and Wei, Zhi},
    number = {4},
    month = {4},
    pages = {191--198},
    volume = {1},
    publisher = {Springer Nature},
    doi = {10.1038/s42256-019-0037-0}
}

@misc{Laskavaia2010,
    title = {{Codan: a C/C++ Static Analysis Framework for CDT}},
    year = {2010},
    author = {Laskavaia, Alena},
    month = {9},
    url = {http://wiki.eclipse.org/images/f/f9/CodanCDTSummit2010.pdf}
}

@article{Narita2018,
    title = {{Coffee consumption and lung cancer risk: The Japan public health center-based prospective study}},
    year = {2018},
    journal = {Journal of Epidemiology},
    author = {Narita, Saki and Saito, Eiko and Sawada, Norie and Shimazu, Taichi and Yamaji, Taiki and Iwasaki, Motoki and Sasazuki, Shizuka and Noda, Mitsuhiko and Inoue, Manami and Tsugane, Shoichiro},
    number = {4},
    pages = {207--213},
    volume = {28},
    publisher = {Japan Epidemiology Association},
    url = {/pmc/articles/PMC5865012/?report=abstract https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5865012/},
    doi = {10.2188/jea.JE20160191},
    issn = {13499092},
    keywords = {Coffee, Japan Public Health Center-based Prospective (JPHC, Lung cancer}
}

@inproceedings{Curtis1989,
    title = {{Cognitive issues in reusing software artifacts}},
    year = {1989},
    author = {Curtis, B.},
    pages = {269–287},
    url = {http://dl.acm.org/citation.cfm?id=75735}
}

@inproceedings{Larranaga2000,
    title = {{Combinatorial optimization by learning and simulation of Bayesian networks}},
    year = {2000},
    author = {Larra{\textbackslash} naga, P. and Etxeberria, R. and Lozano, J. A and Pe{\textbackslash} na, J. M}
}

@inproceedings{larra_naga_combinatorial_2000,
    title = {{Combinatorial optimization by learning and simulation of {\{}Bayesian{\}} networks}},
    year = {2000},
    booktitle = {in {\{}Proceedings{\}} of the {\{}Sixteenth{\}} {\{}Conference{\}} on {\{}Uncertainty{\}} in {\{}Artificial{\}} {\{}Intelligence{\}}},
    author = {Larra{\textbackslash}textbackslash naga, P and Etxeberria, R and Lozano, J A and Pe{\textbackslash}textbackslash na, J M}
}

@article{PMID25574665,
    title = {{Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes.}},
    year = {2015},
    journal = {Nature communications},
    author = {Gerstung, Moritz and Pellagatti, Andrea and Malcovati, Luca and Giagounidis, Aristoteles and Porta, Matteo G Della and J{\"{a}}dersten, Martin and Dolatshad, Hamid and Verma, Amit and Cross, Nicholas C P and Vyas, Paresh and Killick, Sally and Hellstr{\"{o}}m-Lindberg, Eva and Cazzola, Mario and Papaemmanuil, Elli and Campbell, Peter J and Boultwood, Jacqueline},
    month = {1},
    pages = {5901},
    volume = {6},
    publisher = {Nature Publishing Group},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/25574665 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4338540},
    doi = {10.1038/ncomms6901},
    issn = {2041-1723},
    pmid = {25574665}
}

@article{Wahlby2004,
    title = {{Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections.}},
    year = {2004},
    journal = {J Microsc},
    author = {Wahlby, C and Sintorn, I M and Erlandsson, F and Borgefors, G and Bengtsson, E},
    volume = {215},
    url = {http://dx.doi.org/10.1111/j.0022-2720.2004.01338.x},
    doi = {10.1111/j.0022-2720.2004.01338.x}
}

@article{EunbyungParkXufengHanTamaraL.Berg2013,
    title = {{Combining Multiple Sources of Knowledege in Deep CNNs for Action Reco}},
    year = {2013},
    journal = {Journal of Chemical Information and Modeling},
    author = {Eunbyung Park, Xufeng Han, Tamara L.Berg, Alexander C.Berg},
    url = {http://ieeexplore.ieee.org/abstract/document/7477589/},
    isbn = {9788578110796},
    doi = {10.1017/CBO9781107415324.004},
    issn = {1098-6596},
    pmid = {25246403},
    arxivId = {arXiv:1011.1669v3},
    keywords = {icle}
}

@article{mcmahan2016communication,
    title = {{Communication-efficient learning of deep networks from decentralized data}},
    year = {2016},
    journal = {arXiv preprint arXiv:1602.05629},
    author = {McMahan, H Brendan and Moore, Eider and Ramage, Daniel and Hampson, Seth and {others}}
}

@article{Frolova2016,
    title = {{Comparing alternative pipelines for cross-platform microarray gene expression data integration with RNA-seq data in breast cancer}},
    year = {2016},
    journal = {bioRxiv},
    author = {Frolova, Alina and Bondarenko, Vladyslav and Obolenska, Maria},
    url = {http://biorxiv.org/content/early/2016/06/18/059600}
}

@article{Bressem2020,
    title = {{Comparing Different Deep Learning Architectures for Classification of Chest Radiographs}},
    year = {2020},
    journal = {Scientific Reports 2020 10:1},
    author = {Bressem, Keno K. and Adams, Lisa and Erxleben, Christoph and Hamm, Bernd and Niehues, Stefan and Vahldiek, Janis},
    number = {1},
    month = {2},
    pages = {13590},
    volume = {10},
    publisher = {Nature Publishing Group},
    url = {http://arxiv.org/abs/2002.08991},
    doi = {10.1038/s41598-020-70479-z},
    issn = {20452322},
    arxivId = {2002.08991},
    keywords = {Medical research, Radiography}
}

@article{Stepinski2014,
    title = {{Comparing semantically-blind and semantically-aware landscape similarity measures with application to query-by-content and regionalization}},
    year = {2014},
    journal = {Ecological Informatics},
    author = {Stepinski, Tomasz F. and Cohen, Joseph Paul},
    month = {11},
    pages = {69--77},
    volume = {24},
    url = {http://www.sciencedirect.com/science/article/pii/S1574954114000879 http://www.sciencedirect.com/science/article/pii/S1574954114000879/pdf?md5=ce0af889b62317960a418f2a6845bc4a&pid=1-s2.0-S1574954114000879-main.pdf},
    doi = {10.1016/j.ecoinf.2014.07.005},
    issn = {1574-9541}
}

@techreport{WeiYu,
    title = {{Comparing Supervised vs. Unsupervised Image Segmentation Methods}},
    author = {Wei Yu, Guang and Zemel, Richard},
    url = {https://pdfs.semanticscholar.org/7d65/e736a11dd331f9ebb91822e0047b34b59f6a.pdf}
}

@article{Baltruschat2019,
    title = {{Comparison of Deep Learning Approaches for Multi-Label Chest X-Ray Classification}},
    year = {2019},
    journal = {arXiv:1803.02315},
    author = {Baltruschat, Ivo M and Nickisch, Hannes and Grass, Michael and Knopp, Tobias and Saalbach, Axel},
    arxivId = {1803.02315},
    keywords = {Convolutional Neural Networks, Deep Learning, X-Ray}
}

@article{PMID2308929,
    title = {{Comparison of human ZFY and ZFX transcripts.}},
    year = {1990},
    journal = {Proceedings of the National Academy of Sciences of the United States of America},
    author = {Palmer, M S and Berta, P and Sinclair, A H and Pym, B and Goodfellow, P N},
    number = {5},
    pages = {1681--5},
    volume = {87},
    publisher = {National Academy of Sciences},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/2308929},
    pmid = {2308929}
}

@article{Ljosa2013,
    title = {{Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment}},
    year = {2013},
    journal = {J Biomol Screen},
    author = {Ljosa, Vebjorn and Caie, Peter D and Ter Horst, Rob and Sokolnicki, Katherine L and Jenkins, Emma L and Daya, Sandeep and Roberts, Mark E and Jones, Thouis R and Singh, Shantanu and Genovesio, Auguste and Clemons, Paul A and Carragher, Neil O and Carpenter, Anne E},
    number = {10},
    volume = {18},
    url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3884769/pdf/nihms533437.pdf},
    doi = {10.1177/1087057113503553},
    keywords = {drug profiling, high-content screening, image-based screening, phenotypic screening}
}

@inproceedings{stepinski_completion_2008,
    title = {{Completion of the first automatic survey of craters on {\{}Mars{\}}}},
    year = {2008},
    booktitle = {Proceedings of the 11th {\{}Mars{\}} {\{}Crater{\}} {\{}Consortium{\}} meeting, {\{}US{\}} {\{}Geological{\}} {\{}Survey{\}} in {\{}Flagstaff{\}}-{\{}AZ{\}}},
    author = {Stepinski, T F and Urbach, E R}
}

@article{Koboldt2012,
    title = {{Comprehensive molecular portraits of human breast tumours}},
    year = {2012},
    journal = {Nature},
    author = {Koboldt, Daniel C. and Fulton, Robert S. and McLellan, Michael D. and Schmidt, Heather and Kalicki-Veizer, Joelle and McMichael, Joshua F. and Fulton, Lucinda L. and Dooling, David J. and Ding, Li and Mardis, Elaine R. and Wilson, Richard K. and Ally, Adrian and Balasundaram, Miruna and Butterfield, Yaron S. N. and Carlsen, Rebecca and Carter, Candace and Chu, Andy and Chuah, Eric and Chun, Hye-Jung E. and Coope, Robin J. N. and Dhalla, Noreen and Guin, Ranabir and Hirst, Carrie and Hirst, Martin and Holt, Robert A. and Lee, Darlene and Li, Haiyan I. and Mayo, Michael and Moore, Richard A. and Mungall, Andrew J. and Pleasance, Erin and Gordon Robertson, A. and Schein, Jacqueline E. and Shafiei, Arash and Sipahimalani, Payal and Slobodan, Jared R. and Stoll, Dominik and Tam, Angela and Thiessen, Nina and Varhol, Richard J. and Wye, Natasja and Zeng, Thomas and Zhao, Yongjun and Birol, Inanc and Jones, Steven J. M. and Marra, Marco A. and Cherniack, Andrew D. and Saksena, Gordon and Onofrio, Robert C. and Pho, Nam H. and Carter, Scott L. and Schumacher, Steven E. and Tabak, Barbara and Hernandez, Bryan and Gentry, Jeff and Nguyen, Huy and Crenshaw, Andrew and Ardlie, Kristin and Beroukhim, Rameen and Winckler, Wendy and Getz, Gad and Gabriel, Stacey B. and Meyerson, Matthew and Chin, Lynda and Park, Peter J. and Kucherlapati, Raju and Hoadley, Katherine A. and Todd Auman, J. and Fan, Cheng and Turman, Yidi J. and Shi, Yan and Li, Ling and Topal, Michael D. and He, Xiaping and Chao, Hann-Hsiang and Prat, Aleix and Silva, Grace O. and Iglesia, Michael D. and Zhao, Wei and Usary, Jerry and Berg, Jonathan S. and Adams, Michael and Booker, Jessica and Wu, Junyuan and Gulabani, Anisha and Bodenheimer, Tom and Hoyle, Alan P. and Simons, Janae V. and Soloway, Matthew G. and Mose, Lisle E. and Jefferys, Stuart R. and Balu, Saianand and Parker, Joel S. and Neil Hayes, D. and Perou, Charles M. and Malik, Simeen and Mahurkar, Swapna and Shen, Hui and Weisenberger, Daniel J. and Triche Jr, Timothy and Lai, Phillip H. and Bootwalla, Moiz S. and Maglinte, Dennis T. and Berman, Benjamin P. and Van Den Berg, David J. and Baylin, Stephen B. and Laird, Peter W. and Creighton, Chad J. and Donehower, Lawrence A. and Getz, Gad and Noble, Michael and Voet, Doug and Saksena, Gordon and Gehlenborg, Nils and DiCara, Daniel and Zhang, Juinhua and Zhang, Hailei and Wu, Chang-Jiun and Yingchun Liu, Spring and Lawrence, Michael S. and Zou, Lihua and Sivachenko, Andrey and Lin, Pei and Stojanov, Petar and Jing, Rui and Cho, Juok and Sinha, Raktim and Park, Richard W. and Nazaire, Marc-Danie and Robinson, Jim and Thorvaldsdottir, Helga and Mesirov, Jill and Park, Peter J. and Chin, Lynda and Reynolds, Sheila and Kreisberg, Richard B. and Bernard, Brady and Bressler, Ryan and Erkkila, Timo and Lin, Jake and Thorsson, Vesteinn and Zhang, Wei and Shmulevich, Ilya and Ciriello, Giovanni and Weinhold, Nils and Schultz, Nikolaus and Gao, Jianjiong and Cerami, Ethan and Gross, Benjamin and Jacobsen, Anders and Sinha, Rileen and Arman Aksoy, B. and Antipin, Yevgeniy and Reva, Boris and Shen, Ronglai and Taylor, Barry S. and Ladanyi, Marc and Sander, Chris and Anur, Pavana and Spellman, Paul T. and Lu, Yiling and Liu, Wenbin and Verhaak, Roel R. G. and Mills, Gordon B. and Akbani, Rehan and Zhang, Nianxiang and Broom, Bradley M. and Casasent, Tod D. and Wakefield, Chris and Unruh, Anna K. and Baggerly, Keith and Coombes, Kevin and Weinstein, John N. and Haussler, David and Benz, Christopher C. and Stuart, Joshua M. and Benz, Stephen C. and Zhu, Jingchun and Szeto, Christopher C. and Scott, Gary K. and Yau, Christina and Paull, Evan O. and Carlin, Daniel and Wong, Christopher and Sokolov, Artem and Thusberg, Janita and Mooney, Sean and Ng, Sam and Goldstein, Theodore C. and Ellrott, Kyle and Grifford, Mia and Wilks, Christopher and Ma, Singer and Craft, Brian and Yan, Chunhua and Hu, Ying and Meerzaman, Daoud and Gastier-Foster, Julie M. and Bowen, Jay and Ramirez, Nilsa C. and Black, Aaron D. and XPATH ERROR: unknown variable "tname"., Robert E. and White, Peter and Zmuda, Erik J. and Frick, Jessica and Lichtenberg, Tara M. and Brookens, Robin and George, Myra M. and Gerken, Mark A. and Harper, Hollie A. and Leraas, Kristen M. and Wise, Lisa J. and Tabler, Teresa R. and McAllister, Cynthia and Barr, Thomas and Hart-Kothari, Melissa and Tarvin, Katie and Saller, Charles and Sandusky, George and Mitchell, Colleen and Iacocca, Mary V. and Brown, Jennifer and Rabeno, Brenda and Czerwinski, Christine and Petrelli, Nicholas and Dolzhansky, Oleg and Abramov, Mikhail and Voronina, Olga and Potapova, Olga and Marks, Jeffrey R. and Suchorska, Wiktoria M. and Murawa, Dawid and Kycler, Witold and Ibbs, Matthew and Korski, Konstanty and Spycha{\l}a, Arkadiusz and Murawa, Paweł and Brzezi{\'{n}}ski, Jacek J. and Perz, Hanna and {\L}a{\'{z}}niak, Radosław and Teresiak, Marek and Tatka, Honorata and Leporowska, Ewa and Bogusz-Czerniewicz, Marta and Malicki, Julian and Mackiewicz, Andrzej and Wiznerowicz, Maciej and Van Le, Xuan and Kohl, Bernard and Viet Tien, Nguyen and Thorp, Richard and Van Bang, Nguyen and Sussman, Howard and Duc Phu, Bui and Hajek, Richard and Phi Hung, Nguyen and Viet The Phuong, Tran and Quyet Thang, Huynh and Zaki Khan, Khurram and Penny, Robert and Mallery, David and Curley, Erin and Shelton, Candace and Yena, Peggy and Ingle, James N. and Couch, Fergus J. and Lingle, Wilma L. and King, Tari A. and Maria Gonzalez-Angulo, Ana and Mills, Gordon B. and Dyer, Mary D. and Liu, Shuying and Meng, Xiaolong and Patangan, Modesto and Waldman, Frederic and St{\"{o}}ppler, Hubert and Kimryn Rathmell, W. and Thorne, Leigh and Huang, Mei and Boice, Lori and Hill, Ashley and Morrison, Carl and Gaudioso, Carmelo and Bshara, Wiam and Daily, Kelly and Egea, Sophie C. and Pegram, Mark D. and Gomez-Fernandez, Carmen and Dhir, Rajiv and Bhargava, Rohit and Brufsky, Adam and Shriver, Craig D. and Hooke, Jeffrey A. and Leigh Campbell, Jamie and Mural, Richard J. and Hu, Hai and Somiari, Stella and Larson, Caroline and Deyarmin, Brenda and Kvecher, Leonid and Kovatich, Albert J. and Ellis, Matthew J. and King, Tari A. and Hu, Hai and Couch, Fergus J. and Mural, Richard J. and Stricker, Thomas and White, Kevin and Olopade, Olufunmilayo and Ingle, James N. and Luo, Chunqing and Chen, Yaqin and Marks, Jeffrey R. and Waldman, Frederic and Wiznerowicz, Maciej and Bose, Ron and Chang, Li-Wei and Beck, Andrew H. and Maria Gonzalez-Angulo, Ana and Pihl, Todd and Jensen, Mark and Sfeir, Robert and Kahn, Ari and Chu, Anna and Kothiyal, Prachi and Wang, Zhining and Snyder, Eric and Pontius, Joan and Ayala, Brenda and Backus, Mark and Walton, Jessica and Baboud, Julien and Berton, Dominique and Nicholls, Matthew and Srinivasan, Deepak and Raman, Rohini and Girshik, Stanley and Kigonya, Peter and Alonso, Shelley and Sanbhadti, Rashmi and Barletta, Sean and Pot, David and Sheth, Margi and Demchok, John A. and Mills Shaw, Kenna R. and Yang, Liming and Eley, Greg and Ferguson, Martin L. and Tarnuzzer, Roy W. and Zhang, Jiashan and Dillon, Laura A. L. and Buetow, Kenneth and Fielding, Peter and Ozenberger, Bradley A. and Guyer, Mark S. and Sofia, Heidi J. and Palchik, Jacqueline D.},
    number = {7418},
    pages = {61--70},
    volume = {490},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/23000897 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3465532 http://www.nature.com/doifinder/10.1038/nature11412},
    doi = {10.1038/nature11412},
    issn = {0028-0836},
    pmid = {23000897}
}

@article{Quan2018,
    title = {{Compressed Sensing MRI Reconstruction using a Generative Adversarial Network with a Cyclic Loss}},
    year = {2018},
    journal = {IEEE Transactions on Medical Imaging},
    author = {Quan, Tran Minh and Nguyen-Duc, Thanh and Jeong, Won-Ki},
    url = {http://ieeexplore.ieee.org/document/8327637/},
    doi = {10.1109/TMI.2018.2820120},
    issn = {0278-0062}
}

@article{Quan2017,
    title = {{Compressed Sensing MRI Reconstruction with Cyclic Loss in Generative Adversarial Networks}},
    year = {2017},
    author = {Quan, Tran Minh and Nguyen-Duc, Thanh and Jeong, Won-Ki},
    pages = {1--10},
    url = {http://arxiv.org/abs/1709.00753},
    arxivId = {1709.00753}
}

@article{Kutyniok2012,
    title = {{Compressed Sensing: Theory and Applications}},
    year = {2012},
    journal = {Arxiv preprint arXiv:1203.3815},
    author = {Kutyniok, Gitta},
    pages = {1--22},
    url = {http://www.math.tu-berlin.de/fileadmin/i26_fg-kutyniok/Kutyniok/Papers/SurveyCS.pdf},
    isbn = {9781107005587},
    pmid = {16987352},
    keywords = {1 minimization, acknowledgements, dimension reduction, frames, greedy algorithms, ill-posed inverse, problems, random matrices, sparse approximation, sparse recovery, the author would like, to thank emmanuel cand}
}

@article{Turing1937,
    title = {{Computability and {$\lambda$}-Definability}},
    year = {1937},
    journal = {The Journal of Symbolic Logic},
    author = {Turing, A. M.},
    number = {4},
    month = {12},
    pages = {153--163},
    volume = {2},
    url = {http://www.jstor.org/stable/2268280 http://www.jstor.org/stable/pdfplus/2268280.pdf?acceptTC=true},
    doi = {10.2307/2268280},
    issn = {0022-4812}
}

@article{Lehmussola2007,
    title = {{Computational Framework for Simulating Fluorescence Microscope Images With Cell Populations}},
    year = {2007},
    journal = {IEEE Transactions on Medical Imaging},
    author = {Lehmussola, A. and Ruusuvuori, P. and Selinummi, J. and Huttunen, H. and Yli-Harja, O.},
    url = {http://ieeexplore.ieee.org/document/4265752/},
    doi = {10.1109/TMI.2007.896925},
    issn = {0278-0062}
}

@misc{Zaiane2011,
    title = {{Computer Science Conference Rankings}},
    year = {2011},
    author = {Za{\"{i}}ane, Osmar},
    url = {http://webdocs.cs.ualberta.ca/~zaiane/htmldocs/ConfRanking.html}
}

@article{Lin2017,
    title = {{Computer-aided biomarker discovery for precision medicine: data resources, models and applications}},
    year = {2017},
    journal = {Briefings in Bioinformatics},
    author = {Lin, Yuxin and Qian, Fuliang and Shen, Li and Chen, Feifei and Chen, Jiajia and Shen, Bairong},
    url = {http://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbx158/4675071},
    doi = {10.1093/bib/bbx158},
    issn = {1467-5463},
    keywords = {bioinformatics models, databases and knowledge bases, molecular biomarkers, precision medicine, systems}
}

@article{Cooper1969,
    title = {{Computer-Controlled PCM System for Investigation of Dichotic Speech Perception}},
    year = {1969},
    journal = {The Journal of the Acoustical Society of America},
    author = {Cooper, Franklin S. and Matingly, Ignatius G.},
    number = {1A},
    month = {7},
    pages = {115},
    volume = {46},
    url = {http://link.aip.org/link/?JAS/46/115/2},
    doi = {10.1121/1.1972688}
}

@misc{Schlapfer2017,
    title = {{Computer-Interpreted Electrocardiograms: Benefits and Limitations}},
    year = {2017},
    booktitle = {Journal of the American College of Cardiology},
    author = {Schl{\"{a}}pfer, Jürg and Wellens, Hein J.},
    number = {9},
    month = {8},
    pages = {1183--1192},
    volume = {70},
    publisher = {Elsevier USA},
    doi = {10.1016/j.jacc.2017.07.723},
    issn = {15583597},
    keywords = {algorithms, software}
}

@article{Turing1950a,
    title = {{Computing Machinery and Intelligence}},
    year = {1950},
    journal = {Mind},
    author = {Turing, A. M.},
    number = {236},
    month = {10},
    pages = {433--460},
    series = {New Series},
    volume = {59},
    url = {http://www.jstor.org/stable/2251299 http://www.jstor.org/stable/pdfplus/2251299.pdf?acceptTC=true},
    issn = {0026-4423}
}

@misc{mirza2014conditional,
    title = {{Conditional Generative Adversarial Nets}},
    year = {2014},
    author = {Mirza, Mehdi and Osindero, Simon},
    url = {http://arxiv.org/abs/1411.1784},
    arxivId = {1411.1784}
}

@article{Odena2016,
    title = {{Conditional Image Synthesis With Auxiliary Classifier GANs}},
    year = {2016},
    author = {Odena, Augustus and Olah, Christopher and Shlens, Jonathon},
    month = {10},
    url = {http://arxiv.org/abs/1610.09585},
    arxivId = {1610.09585}
}

@article{Odena2016a,
    title = {{Conditional Image Synthesis With Auxiliary Classifier GANs}},
    year = {2016},
    journal = {arXiv},
    author = {Odena, Augustus and Olah, Christopher and Shlens, Jonathon},
    pages = {1--14},
    url = {http://arxiv.org/abs/1610.09585},
    arxivId = {1610.09585}
}

@article{Zhao2019,
    title = {{Confounder-Aware Visualization of ConvNets}},
    year = {2019},
    journal = {arXiv:1907.12727},
    author = {Zhao, Qingyu and Adeli, Ehsan and Pfefferbaum, Adolf and Sullivan, Edith V and Pohl, Kilian M},
    url = {https://github.com/QingyuZhao/Confounder-Aware-CNN-},
    arxivId = {1907.12727v1}
}

@article{Takane2001,
    title = {{Constrained principal component analysis: a comprehensive theory}},
    shorttitle = {Constrained principal component analysis},
    year = {2001},
    journal = {Applicable Algebra in Engineering, Communication and Computing},
    author = {Takane, Yoshio and Hunter, Michael A.},
    number = {5},
    pages = {391–419},
    volume = {12},
    url = {http://link.springer.com/article/10.1007/s002000100081}
}

@article{Mcdonagh,
    title = {{Context-Sensitive Super-Resolution for Fast Fetal Magnetic Resonance Imaging}},
    author = {Mcdonagh, Steven and Hou, Benjamin and Alansary, Amir and Oktay, Ozan and Kamnitsas, Konstantinos and Rutherford, Mary and Hajnal, Jo V and Kainz, Bernhard},
    url = {https://arxiv.org/pdf/1703.00035.pdf}
}

@article{PMID26555596,
    title = {{Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics.}},
    year = {2015},
    journal = {PloS one},
    author = {Asgari, Ehsaneddin and Mofrad, Mohammad R K},
    editor = {Kobeissy, Firas H},
    number = {11},
    month = {11},
    pages = {e0141287},
    volume = {10},
    url = {http://dx.plos.org/10.1371/journal.pone.0141287 http://www.ncbi.nlm.nih.gov/pubmed/26555596 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4640716},
    doi = {10.1371/journal.pone.0141287},
    issn = {1932-6203},
    pmid = {26555596},
    keywords = {Amino Acid Sequence, Computational Biology, Databases, Genomics, Intrinsically Disordered Proteins, Natural Language Processing, Nuclear Pore Complex Proteins, Protein, Protein Structure, Proteins, Proteomics, Secondary, Support Vector Machine}
}

@article{Menegaux2018,
    title = {{Continuous embeddings of DNA sequencing reads, and application to metagenomics}},
    year = {2018},
    author = {Menegaux, Romain and Vert, Jean-Philippe},
    url = {https://www.biorxiv.org/content/biorxiv/early/2018/05/31/335943.full.pdf},
    doi = {10.1101/335943}
}

@article{Arbelaez2011,
    title = {{Contour detection and hierarchical image segmentation}},
    year = {2011},
    journal = {Pattern Analysis and Machine Intelligence, IEEE Transactions on},
    author = {Arbelaez, Pablo and Maire, Michael and Fowlkes, Charless and Malik, Jitendra},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5557884 http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.187.9943&rep=rep1&type=pdf http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5557884&abstractAccess=no&userType=inst}
}

@inproceedings{Rifai2011,
    title = {{Contractive auto-encoders: explicit invariance during feature extraction}},
    year = {2011},
    booktitle = {International Conference on Machine Learning},
    author = {Rifai, Salah and Vincent, Pascal and Muller, Xavier and Glorot, Xavier and Bengio, Yoshua},
    pages = {833--840},
    url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.231.4115 http://www.icml-2011.org/papers/455_icmlpaper.pdf}
}

@techreport{Rifai2011b,
    title = {{Contractive Auto-Encoders: Explicit Invariance During Feature Extraction}},
    year = {2011},
    author = {Rifai, Salah and Vincent, Pascal and Muller, Xavier and Glorot, Xavier and Bengio, Yoshua}
}

@techreport{Rifai2011a,
    title = {{Contractive Auto-Encoders: Explicit Invariance During Feature Extraction}},
    year = {2011},
    author = {Rifai, Salah and Vincent, Pascal and Muller, Xavier and Glorot, Xavier and Bengio, Yoshua},
    url = {http://www-labs.iro.umontreal.ca/~vincentp/Publications/contractive_autoencoder_icml2011.pdf}
}

@inproceedings{Pike1980,
    title = {{Control of crater morphology by gravity and target type-Mars, earth, moon}},
    year = {1980},
    author = {Pike, R.J.},
    pages = {2159–2189},
    volume = {11},
    url = {http://adsabs.harvard.edu/full/1980lpsc...11.2159p http://www.uapress.arizona.edu/onlinebks/Mercury/MercuryCh8.pdf}
}

@article{LeCun1995,
    title = {{Convolutional networks for images, speech, and time series}},
    year = {1995},
    journal = {The handbook of brain theory and neural networks},
    author = {LeCun, Yann and Bengio, Yoshua},
    number = {April 2016},
    pages = {255--258},
    volume = {3361},
    url = {http://www.iro.umontreal.ca/~lisa/pointeurs/handbook-convo.pdf http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.32.9297&amp;rep=rep1&amp;type=pdf},
    isbn = {0262511029},
    doi = {10.1109/IJCNN.2004.1381049},
    issn = {1098-7576},
    pmid = {17001990},
    arxivId = {arXiv:1011.1669v3}
}

@inproceedings{Duvenaud2015,
    title = {{Convolutional Networks on Graphs for Learning Molecular Fingerprints}},
    year = {2015},
    booktitle = {Neural Information Processing Systems},
    author = {Duvenaud, David and Maclaurin, Dougal and Aguilera-Iparraguirre, Jorge and G{\'{o}}mez-Bombarelli, Rafael and Hirzel, Timothy and Aspuru-Guzik, Alán and Adams, Ryan P.},
    month = {9},
    url = {http://arxiv.org/abs/1509.09292},
    isbn = {9783527678679},
    doi = {10.1021/acs.jcim.5b00572},
    issn = {10495258},
    pmid = {26726827},
    arxivId = {1509.09292}
}

@inproceedings{Defferrard2016,
    title = {{Convolutional Neural Networks on Graphs with Fast Localized Spectral Filtering}},
    year = {2016},
    booktitle = {Neural Information Processing Systems},
    author = {Defferrard, Michaël and Bresson, Xavier and Vandergheynst, Pierre},
    url = {http://arxiv.org/abs/1606.09375},
    issn = {10495258},
    arxivId = {1606.09375}
}

@article{Osher2009,
    title = {{Coordinate descent optimization for l1 minimization with application to compressed sensing; a greedy algorithm}},
    year = {2009},
    journal = {Inverse Problems and Imaging},
    author = {Osher, Stanley and Li, Yingying and Osher, Stanley and Li, Yingying},
    url = {http://www.aimsciences.org/journals/displayArticles.jsp?paperID=4386},
    isbn = {0537-9989},
    doi = {10.3934/ipi.2009.3.487},
    issn = {1930-8337},
    keywords = {and phrases, basis pursuit, bregman iteration, constrained, greedy sweep, shrinkage}
}

@article{Michael2003,
    title = {{Coordinate registration by automated crater recognition}},
    year = {2003},
    journal = {Planetary and Space Science},
    author = {Michael, G.G.},
    number = {9–10},
    month = {8},
    pages = {563--568},
    volume = {51},
    url = {http://www.sciencedirect.com/science/article/pii/S0032063303000746 http://pdn.sciencedirect.com/science?_ob=MiamiImageURL&_cid=271836&_user=1516297&_pii=S0032063303000746&_check=y&_origin=article&_zone=toolbar&_coverDate=2003--30&view=c&originContentFamil},
    doi = {10.1016/S0032-0633(03)00074-6},
    issn = {0032-0633}
}

@misc{MayoClinic2020,
    title = {{Coronavirus disease 2019 (COVID-19) - Symptoms and causes}},
    year = {2020},
    author = {{Mayo Clinic}},
    url = {https://www.mayoclinic.org/diseases-conditions/coronavirus/symptoms-causes/syc-20479963}
}

@article{10.1148/radiol.2020200490,
    title = {{Coronavirus Disease 2019 (COVID-19): A Perspective from China}},
    year = {2020},
    journal = {Radiology},
    author = {Zu, Zi Yue and Jiang, Meng Di and Xu, Peng Peng and Chen, Wen and Ni, Qian Qian and Lu, Guang Ming and Zhang, Long Jiang},
    month = {2},
    pages = {200490},
    publisher = {NLM (Medline)},
    doi = {10.1148/radiol.2020200490},
    issn = {15271315},
    pmid = {32083985}
}

@article{10.2214/AJR.20.23034,
    title = {{Coronavirus Disease 2019 (COVID-19): A Systematic Review of Imaging Findings in 919 Patients}},
    year = {2020},
    journal = {American Journal of Roentgenology},
    author = {Salehi, Sana and Abedi, Aidin and Balakrishnan, Sudheer and Gholamrezanezhad, Ali},
    month = {3},
    pages = {1--7},
    publisher = {NLM (Medline)},
    url = {https://www.ajronline.org/doi/10.2214/AJR.20.23034},
    doi = {10.2214/AJR.20.23034},
    issn = {0361-803X},
    keywords = {2019-nCoV, COVID-19, CT scan, coronavirus, influenza, outbreak, pneumonia, radiology, systematic review, viral}
}

@article{Calderon-Ramirez2020,
    title = {{Correcting Data Imbalance for Semi-Supervised Covid-19 Detection Using X-ray Chest Images}},
    year = {2020},
    author = {Calderon-Ramirez, Saul and {Shengxiang-Yang} and Moemeni, Armaghan and Elizondo, David and Colreavy-Donnelly, Simon and Chavarria-Estrada, Luis Fernando and Molina-Cabello, Miguel A.},
    month = {8},
    url = {http://arxiv.org/abs/2008.08496},
    arxivId = {2008.08496},
    keywords = {Chest X-Ray, Computer Aided Diagnosis, Coronavirus, Covid-19, Index Terms-Data imbalance, MixMatch, Semi-Supervised Deep Learn-ing}
}

@phdthesis{Hall1999,
    title = {{Correlation-based feature selection for machine learning}},
    year = {1999},
    author = {Hall, M. A}
}

@article{Needell2008,
    title = {{CoSaMP: Iterative signal recovery from incomplete and inaccurate samples}},
    year = {2008},
    author = {Needell, D. and Tropp, J. A.},
    month = {3},
    url = {http://arxiv.org/abs/0803.2392},
    arxivId = {0803.2392}
}

@article{Jubb2011,
    title = {{Costs, risks and benefits in improving access to journal articles}},
    year = {2011},
    journal = {Learned Publishing},
    author = {Jubb, Michael and Cook, Joel and Hulls, Daniel and Jones, David and Ware, Mark},
    number = {4},
    month = {10},
    pages = {247--259},
    volume = {24},
    url = {http://www.ingentaconnect.com/search/download?pub=infobike://alpsp/lp/2011/00000024/00000004/art00002&mimetype=application/pdf},
    doi = {10.1087/20110402}
}

@article{Kording2017,
    title = {{Could a Neuroscientist Understand a Microprocessor?}},
    year = {2017},
    journal = {PLoS Comput Biol},
    author = {Kording, Jonas E},
    number = {1},
    pages = {1005268},
    volume = {13},
    url = {http://ericmjonas.github.io/neuroproc/.},
    isbn = {1111111111},
    doi = {10.1371/journal.pcbi.1005268},
    keywords = {Adatao, Adobe, Apple, Blue Goji, Bosch, Cisco, Cloudera, Cray, EMC2, Ericsson, Facebook, Foundation, Fujitsu, Guavus, HP, Huawei, Inc, Informatica, Intel, Microsoft, NetApp, Pivotal, Samsung, Schlumberger, Splunk, Virdata, and VMware KPK is supported by the National}
}

@article{Cohen2017,
    title = {{Count-ception: Counting by Fully Convolutional Redundant Counting}},
    year = {2017},
    author = {Cohen, Joseph Paul and Lo, Henry Z. and Bengio, Yoshua},
    month = {3},
    url = {http://arxiv.org/abs/1703.08710},
    arxivId = {1703.08710}
}

@inproceedings{Cohen2017countception,
    title = {{Count-ception: Counting by Fully Convolutional Redundant Counting}},
    year = {2017},
    booktitle = {International Conference on Computer Vision Workshop on BioImage Computing},
    author = {Cohen, Joseph Paul and Boucher, Genevieve and Glastonbury, Craig A. and Lo, Henry Z. and Bengio, Yoshua},
    url = {http://arxiv.org/abs/1703.08710},
    arxivId = {1703.08710}
}

@inproceedings{Arteta16,
    title = {{Counting in The Wild}},
    year = {2016},
    booktitle = {European Conference on Computer Vision},
    author = {Arteta, Carlos and Lempitsky, Victor and Zisserman, Andrew}
}

@inproceedings{Fine2003,
    title = {{Coverage directed test generation for functional verification using bayesian networks}},
    year = {2003},
    author = {Fine, S. and Ziv, A.},
    pages = {286–291},
    url = {http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=1219010&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D1219010 http://wing.comp.nus.edu.sg/downloads/keyphraseCorpus/61/61.pdf}
}

@article{10.1016/s2589-75002030054-6,
    title = {{COVID-19 and artificial intelligence: protecting health-care workers and curbing the spread}},
    year = {2020},
    journal = {The Lancet Digital Health},
    author = {McCall, Becky},
    doi = {10.1016/s2589-7500(20)30054-6},
    issn = {25897500}
}

@article{Pereira2020covidhierarchical,
    title = {{COVID-19 identification in chest X-ray images on flat and hierarchical classification scenarios}},
    year = {2020},
    journal = {Computer Methods and Programs in Biomedicine},
    author = {Pereira, Rodolfo M. and Bertolini, Diego and Teixeira, Lucas O. and Silla, Carlos N. and Costa, Yandre M.G.},
    month = {10},
    pages = {105532},
    volume = {194},
    publisher = {Elsevier Ireland Ltd},
    doi = {10.1016/j.cmpb.2020.105532},
    issn = {18727565},
    pmid = {32446037},
    arxivId = {2004.05835},
    keywords = {COVID-19, Chest X-ray, Medical image analysis, Pneumonia, Texture}
}

@article{Cohen2020coviddataset,
    title = {{COVID-19 Image Data Collection}},
    year = {2020},
    journal = {https://github.com/ieee8023/covid-chestxray-dataset},
    author = {Cohen, Joseph Paul and Morrison, Paul and Dao, Lan},
    url = {https://arxiv.org/abs/2003.11597}
}

@article{cohen2020covidProspective,
    title = {{COVID-19 Image Data Collection: Prospective Predictions Are the Future}},
    year = {2020},
    journal = {Journal of Machine Learning for Biomedical Imaging (MELBA)},
    author = {Cohen, Joseph Paul and Morrison, Paul and Dao, Lan and Roth, Karsten and Duong, Tim Q and Ghassemi, Marzyeh},
    url = {https://github.com/ieee8023/covid-chestxray-dataset},
    arxivId = {2006.11988}
}

@misc{Winther2020ovid-19-image-repository,
    title = {{COVID-19 Image Repository}},
    year = {2020},
    booktitle = {https://github.com/ml-workgroup/covid-19-image-repository},
    author = {Winther, Hinrich B. and Laser, Hans and Gerbel, Svetlana and Maschke, Sabine K. and Hinrichs, Jan B. and Vogel-Claussen, Jens and Wacker, Frank K. and H{\"{o}}per, Marius M. and Meyer, Bernhard C.},
    doi = {10.6084/m9.figshare.12275009}
}

@article{Amer2020severitylocalization,
    title = {{COVID-19 in CXR: from Detection and Severity Scoring to Patient Disease Monitoring}},
    year = {2020},
    author = {Amer, Rula and Frid-Adar, Maayan and Gozes, Ophir and Nassar, Jannette and Greenspan, Hayit},
    month = {8},
    url = {http://arxiv.org/abs/2008.02150},
    arxivId = {2008.02150},
    keywords = {DRR, Index Terms-COVID-19, detection, localization, patient monitoring, pneumonia, severity scoring}
}

@article{Murphy2020,
    title = {{COVID-19 on Chest Radiographs: A Multireader Evaluation of an Artificial Intelligence System}},
    year = {2020},
    journal = {Radiology},
    author = {Murphy, Keelin and Smits, Henk and Knoops, Arnoud J.G. and Korst, Michael B.J.M. and Samson, Tijs and Scholten, Ernst T. and Schalekamp, Steven and Schaefer-Prokop, Cornelia M. and Philipsen, Rick H.H.M. and Meijers, Annet and Melendez, Jaime and van Ginneken, Bram and Rutten, Matthieu},
    number = {3},
    month = {9},
    pages = {E166-E172},
    volume = {296},
    publisher = {NLM (Medline)},
    url = {/pmc/articles/PMC7437494/?report=abstract https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7437494/},
    doi = {10.1148/radiol.2020201874},
    issn = {15271315},
    pmid = {32384019}
}

@article{Borghesi2020BrixiaScore,
    title = {{COVID-19 outbreak in Italy: experimental chest X-ray scoring system for quantifying and monitoring disease progression}},
    year = {2020},
    journal = {Radiologia Medica},
    author = {Borghesi, Andrea and Maroldi, Roberto},
    publisher = {Springer},
    doi = {10.1007/s11547-020-01200-3},
    issn = {18266983},
    pmid = {32358689},
    keywords = {COVID-19, Chest X-ray, Computed tomography, SARS-CoV-2, Scoring system}
}

@article{Zhang2020AnomalyDetection,
    title = {{COVID-19 Screening on Chest X-ray Images Using Deep Learning based Anomaly Detection}},
    year = {2020},
    author = {Zhang, Jianpeng and Xie, Yutong and Li, Yi and Shen, Chunhua and Xia, Yong},
    month = {3},
    url = {http://arxiv.org/abs/2003.12338},
    arxivId = {2003.12338}
}

@article{Peng2020COVID-19-CT-CXR,
    title = {{COVID-19-CT-CXR: a freely accessible and weakly labeled chest X-ray and CT image collection on COVID-19 from the biomedical literature}},
    year = {2020},
    journal = {https://github.com/ncbi-nlp/COVID-19-CT-CXR.},
    author = {Peng, Y and Tang, YX and Lee, S and {Zhu Y} and Summers, RM and Lu, Z}
}

@article{Apostolopoulos2020covidtransferlearning,
    title = {{COVID-19: automatic detection from X-ray images utilizing transfer learning with convolutional neural networks}},
    year = {2020},
    journal = {Physical and Engineering Sciences in Medicine},
    author = {Apostolopoulos, Ioannis D. and Mpesiana, Tzani A.},
    month = {4},
    pages = {1--6},
    publisher = {Springer Science and Business Media LLC},
    doi = {10.1007/s13246-020-00865-4},
    issn = {2662-4729},
    arxivId = {2003.11617},
    keywords = {Biological and Medical Physics, Biomedical Engineering and Bioengineering, Biomedicine, Biophysics, Medical and Radiation Physics, general}
}

@article{Wang2020covidnet,
    title = {{COVID-Net: A Tailored Deep Convolutional Neural Network Design for Detection of COVID-19 Cases from Chest X-Ray Images}},
    year = {2020},
    author = {Wang, Linda and Wong, Alexander},
    month = {3},
    url = {http://arxiv.org/abs/2003.09871},
    arxivId = {2003.09871}
}

@article{Wong2020COVIDNet-S,
    title = {{COVIDNet-S: Towards computer-aided severity assessment via training and validation of deep neural networks for geographic extent and opacity extent scoring of chest X-rays for SARS-CoV-2 lung disease severity}},
    year = {2020},
    journal = {arXiv},
    author = {Wong, Alexander and Lin, Zhong Qiu and Wang, Linda and Chung, Audrey G. and Shen, Beiyi and Abbasi, Almas and Hoshmand-Kochi, Mahsa and Duong, Timothy Q.},
    month = {5},
    publisher = {arXiv},
    url = {http://arxiv.org/abs/2005.12855},
    arxivId = {2005.12855}
}

@misc{ref53,
    title = {{Cowen LE, Carpenter AE, Matangkasombut O, Fink GR, Lindquist S: Genetic architecture of Hsp90-dependent drug resistance. Eukaryot Cell.}}
}

@article{Martins2009,
    title = {{Crater Detection by a Boosting Approach}},
    year = {2009},
    journal = {IEEE Geoscience and Remote Sensing Letters},
    author = {Martins, R. and Pina, P. and Marques, J.S. and Silveira, M. and Silveira, M.},
    number = {1},
    month = {1},
    pages = {127--131},
    volume = {6},
    url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=4717240},
    doi = {10.1109/LGRS.2008.2006004},
    issn = {1545-598X}
}

@article{Leroy2001,
    title = {{Crater detection for autonomous landing on asteroids}},
    year = {2001},
    journal = {Image and Vision Computing},
    author = {Leroy, B. and Medioni, G. and Johnson, E. and Matthies, L.},
    number = {11},
    pages = {787--792},
    volume = {19},
    issn = {0262-8856}
}

@article{Cohen2016a,
    title = {{Crater Detection via Convolutional Neural Networks}},
    year = {2016},
    journal = {Lunar and Planetary Institute Science Conference Abstracts},
    author = {Cohen, Joseph Paul and Lo, Henry Z. and Lu, Tingting and Ding, Wei},
    volume = {47},
    url = {http://arxiv.org/abs/1601.00978},
    arxivId = {1601.00978}
}

@article{Cohen2013b,
    title = {{Crater Detection via Genetic Search Methods to Reduce Image Features}},
    year = {2013},
    journal = {Advances in Space Research},
    author = {Cohen, Joseph Paul and Ding, Wei},
    month = {12},
    url = {http://www.sciencedirect.com/science/article/pii/S0273117713002652 http://scholarworks.umb.edu/masters_theses/207 http://scholarworks.umb.edu/masters_theses/207/},
    issn = {0273-1177}
}

@article{Barlow1988,
    title = {{Crater size-frequency distributions and a revised Martian relative chronology}},
    year = {1988},
    journal = {Icarus},
    author = {Barlow, Nadine G.},
    number = {2},
    month = {8},
    pages = {285--305},
    volume = {75},
    url = {http://www.sciencedirect.com/science/article/pii/0019103588900061 http://www.sciencedirect.com/science?_ob=ShoppingCartURL&_method=add&_udi=B6WGF-472T2RY-6H&_acct=C000050221&_version=1&_userid=10&_ts=1308979791&md5=d9a659bba6921559e0b151442d4d485b},
    doi = {16/0019-1035(88)90006-1},
    issn = {0019-1035}
}

@article{Chatterjee2019a,
    title = {{Creating Robust Predictive Radiomic Models for Data From Independent Institutions Using Normalization}},
    year = {2019},
    journal = {IEEE Transactions on Radiation and Plasma Medical Sciences},
    author = {Chatterjee, Avishek and Vallieres, Martin and Dohan, Anthony and Levesque, Ives R. and Ueno, Yoshiko and Saif, Sameh and Reinhold, Caroline and Seuntjens, Jan},
    number = {2},
    month = {3},
    pages = {210--215},
    volume = {3},
    url = {https://ieeexplore.ieee.org/document/8616907/},
    doi = {10.1109/TRPMS.2019.2893860},
    issn = {2469-7311}
}

@article{Taroni2017,
    title = {{Cross-Platform Normalization Enables Machine Learning Model Training On Microarray And RNA-Seq Data Simultaneously}},
    year = {2017},
    journal = {bioRxiv},
    author = {Taroni, Jaclyn N and Greene, Casey S},
    url = {http://biorxiv.org/content/early/2017/03/20/118349}
}

@article{Thompson2016,
    title = {{Cross-platform normalization of microarray and RNA-seq data for machine learning applications}},
    year = {2016},
    journal = {PeerJ},
    author = {Thompson, Jeffrey A. and Tan, Jie and Greene, Casey S.},
    month = {1},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/26844019 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4736986 https://peerj.com/articles/1621},
    doi = {10.7717/peerj.1621},
    issn = {2167-8359},
    pmid = {26844019},
    keywords = {Cross-platform normalization, Distribution, Gene expression, Machine learning, Microarray, Nonparanormal transformation, Normalization, Quantile normalization, RNA-sequencing, Training}
}

@article{Filice2020SIIMPneumothorax,
    title = {{Crowdsourcing pneumothorax annotations using machine learning annotations on the NIH chest X-ray dataset}},
    year = {2020},
    journal = {Journal of Digital Imaging},
    author = {Filice, Ross W. and Stein, Anouk and Wu, Carol C. and Arteaga, Veronica A. and Borstelmann, Stephen and Gaddikeri, Ramya and Galperin-Aizenberg, Maya and Gill, Ritu R. and Godoy, Myrna C. and Hobbs, Stephen B. and Jeudy, Jean and Lakhani, Paras C. and Laroia, Archana and Nayak, Sundeep M. and Parekh, Maansi R. and Prasanna, Prasanth and Shah, Palmi and Vummidi, Dharshan and Yaddanapudi, Kavitha and Shih, George},
    doi = {10.1007/s10278-019-00299-9},
    keywords = {Imaging / Radiology}
}

@article{Chung2020,
    title = {{CT Imaging Features of 2019 Novel Coronavirus (2019-nCoV)}},
    year = {2020},
    journal = {Radiology},
    author = {Chung, Michael and Bernheim, Adam and Mei, Xueyan and Zhang, Ning and Huang, Mingqian and Zeng, Xianjun and Cui, Jiufa and Xu, Wenjian and Yang, Yang and Fayad, Zahi A. and Jacobi, Adam and Li, Kunwei and Li, Shaolin and Shan, Hong},
    month = {2},
    pages = {200230},
    publisher = {Radiological Society of North America},
    url = {http://pubs.rsna.org/doi/10.1148/radiol.2020200230},
    doi = {10.1148/radiol.2020200230},
    issn = {0033-8419}
}

@article{Lee2006,
    title = {{Culturability and concentration of indoor and outdoor airborne fungi in six single-family homes}},
    year = {2006},
    journal = {Atmospheric Environment},
    author = {Lee, Taekhee and Grinshpun, Sergey A. and Martuzevicius, Dainius and Adhikari, Atin and Crawford, Carlos M. and Reponen, Tiina},
    number = {16},
    pages = {2902--2910},
    volume = {40},
    isbn = {13522310},
    doi = {10.1016/j.atmosenv.2006.01.011},
    issn = {13522310},
    pmid = {18458748},
    keywords = {Culturability, Culturable fungi, Indoor air, Outdoor air, Total fungal spore}
}

@article{Bengio2009,
    title = {{Curriculum learning}},
    year = {2009},
    journal = {International Conference on Machine Learning},
    author = {Bengio, Yoshua and Louradour, Jérôme and Collobert, Ronan and Weston, Jason},
    url = {http://dl.acm.org/citation.cfm?id=1553380 http://portal.acm.org/citation.cfm?doid=1553374.1553380},
    isbn = {9781605585161},
    doi = {10.1145/1553374.1553380},
    issn = {0022-5193},
    pmid = {5414602},
    arxivId = {arXiv:1011.1669v3}
}

@misc{Chu2017,
    title = {{CycleGAN, a Master of Steganography}},
    year = {2017},
    booktitle = {Neural Information Processing Systems Workshop on Machine Deception},
    author = {Chu, Casey and Zhmoginov, Andrey and Sandler, Mark},
    month = {12},
    url = {http://arxiv.org/abs/1712.02950},
    arxivId = {1712.02950}
}

@inproceedings{Goldsborough2017,
    title = {{CytoGAN: Generative Modeling of Cell Images}},
    year = {2017},
    booktitle = {Workshop On Machine Learning In Computational Biology, Neural Information Processing Systems},
    author = {Goldsborough, Peter and Pawlowski, Nick and Caicedo, Juan C and Singh, Shantanu and Carpenter, Anne E},
    url = {https://www.biorxiv.org/content/biorxiv/early/2017/12/02/227645.full.pdf},
    doi = {10.1101/227645}
}

@article{Yang2018,
    title = {{DAGAN: Deep De-Aliasing Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruction}},
    year = {2018},
    journal = {IEEE Transactions on Medical Imaging},
    author = {Yang, Guang and Yu, Simiao and Dong, Hao and Slabaugh, Greg and Dragotti, Pier Luigi and Ye, Xujiong and Liu, Fangde and Arridge, Simon and Keegan, Jennifer and Guo, Yike and Firmin, David},
    url = {http://ieeexplore.ieee.org/document/8233175/},
    doi = {10.1109/TMI.2017.2785879},
    issn = {0278-0062}
}

@article{Donahue2017,
    title = {{Dance Dance Convolution}},
    year = {2017},
    author = {Donahue, Chris and Lipton, Zachary C. and McAuley, Julian},
    month = {3},
    url = {http://arxiv.org/abs/1703.06891},
    arxivId = {1703.06891}
}

@article{Quang2016,
    title = {{DanQ: A hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences}},
    year = {2016},
    journal = {Nucleic Acids Research},
    author = {Quang, Daniel and Xie, Xiaohui},
    number = {11},
    month = {6},
    volume = {44},
    publisher = {Oxford University Press},
    doi = {10.1093/nar/gkw226},
    issn = {13624962},
    pmid = {27084946}
}

@article{Sohn2007,
    title = {{Data fusion of high-resolution satellite imagery and LiDAR data for automatic building extraction}},
    year = {2007},
    journal = {ISPRS Journal of Photogrammetry and Remote Sensing},
    author = {Sohn, Gunho and Dowman, Ian},
    number = {1},
    pages = {43–63},
    volume = {62},
    url = {http://www.sciencedirect.com/science/article/pii/S0924271607000032 http://perpustakaan.big.go.id/lib/file_artikel/Data fusion of high-resolution.pdf}
}

@inproceedings{Lee1998,
    title = {{Data mining approaches for intrusion detection}},
    year = {1998},
    author = {Lee, Wenke and Stolfo, Salvatore J},
    pages = {6–6},
    publisher = {USENIX Association},
    url = {http://portal.acm.org/citation.cfm?id=1267549.1267555},
    address = {Berkeley, CA, USA}
}

@article{Menzies2007,
    title = {{Data mining static code attributes to learn defect predictors}},
    year = {2007},
    journal = {Software Engineering, IEEE Transactions on},
    author = {Menzies, T. and Greenwald, J. and Frank, A.},
    number = {1},
    pages = {2–13},
    volume = {33},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4027145 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=4027145&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D4027145}
}

@article{Tang2020,
    title = {{Data Valuation for Medical Imaging Using Shapley Value: Application on A Large-scale Chest X-ray Dataset}},
    year = {2020},
    author = {Tang, Siyi and Ghorbani, Amirata and Yamashita, Rikiya and Rehman, Sameer and Dunnmon, Jared A. and Zou, James and Rubin, Daniel L.},
    month = {10},
    url = {http://arxiv.org/abs/2010.08006},
    arxivId = {2010.08006}
}

@article{Gebru2018,
    title = {{Datasheets for Datasets}},
    year = {2018},
    author = {Gebru, Timnit and Morgenstern, Jamie and Vecchione, Briana and Vaughan, Jennifer Wortman and Wallach, Hanna and Daum{\'{e}}, Hal and Crawford, Kate},
    month = {3},
    url = {http://arxiv.org/abs/1803.09010},
    arxivId = {1803.09010}
}

@misc{_davi_,
    title = {{Davi de Castro Reis}},
    url = {http://research.google.com/pubs/author17772.html}
}

@inproceedings{Zhang2017-adv,
    title = {{Deep Adversarial Networks for Biomedical Image Segmentation Utilizing Unannotated Images}},
    year = {2017},
    booktitle = {Medical Image Computing and Computer-Assisted Intervention},
    author = {Zhang, Yizhe and Lin, Yang and Chen, Jianxu and Fredericksen, Maridel and Hughes, David P. and Chen, Danny Z. and Yang, Lin and Chen, Jianxu and Fredericksen, Maridel and Hughes, David P. and Chen, Danny Z.},
    month = {9},
    url = {http://link.springer.com/10.1007/978-3-319-66179-7_47},
    isbn = {9783319661797},
    doi = {10.1007/978-3-319-66179-7}
}

@article{Golan2018,
    title = {{Deep Anomaly Detection Using Geometric Transformations}},
    year = {2018},
    journal = {Advances in Neural Information Processing Systems},
    author = {Golan, Izhak and El-Yaniv, Ran},
    month = {5},
    pages = {9758--9769},
    volume = {2018-Decem},
    publisher = {Neural information processing systems foundation},
    url = {http://arxiv.org/abs/1805.10917},
    arxivId = {1805.10917}
}

@misc{Caron2018,
    title = {{Deep Clustering for Unsupervised Learning of Visual Features}},
    year = {2018},
    author = {Caron, Mathilde and Bojanowski, Piotr and Joulin, Armand and Douze, Matthijs},
    pages = {132--149},
    url = {http://openaccess.thecvf.com/content_ECCV_2018/html/Mathilde_Caron_Deep_Clustering_for_ECCV_2018_paper.html}
}

@article{Caron2018a,
    title = {{Deep Clustering for Unsupervised Learning of Visual Features}},
    year = {2018},
    author = {Caron, Mathilde and Bojanowski, Piotr and Joulin, Armand and Douze, Matthijs},
    month = {7},
    url = {http://arxiv.org/abs/1807.05520},
    arxivId = {1807.05520}
}

@article{han2015deep,
    title = {{Deep compression: Compressing deep neural networks with pruning, trained quantization and huffman coding}},
    year = {2015},
    journal = {arXiv preprint arXiv:1510.00149},
    author = {Han, Song and Mao, Huizi and Dally, William J}
}

@article{Kulkarni2015,
    title = {{Deep Convolutional Inverse Graphics Network}},
    year = {2015},
    author = {Kulkarni, Tejas D and Whitney, Will and Kohli, Pushmeet and Tenenbaum, Joshua B},
    url = {https://arxiv.org/pdf/1503.03167.pdf}
}

@article{Sun2016,
    title = {{Deep CORAL: Correlation Alignment for Deep Domain Adaptation}},
    year = {2016},
    author = {Sun, Baochen and Saenko, Kate},
    month = {7},
    url = {http://arxiv.org/abs/1607.01719},
    isbn = {978-3-319-46447-3},
    doi = {10.1007/978-3-319-46448-0},
    issn = {0302-9743},
    pmid = {4520227},
    arxivId = {1607.01719}
}

@article{Yu2017,
    title = {{Deep De-Aliasing for Fast Compressive Sensing MRI}},
    year = {2017},
    author = {Yu, Simiao and Dong, Hao and Yang, Guang and Slabaugh, Greg and Dragotti, Pier Luigi and Ye, Xujiong and Liu, Fangde and Arridge, Simon and Keegan, Jennifer and Firmin, David and Guo, Yike},
    url = {http://arxiv.org/abs/1705.07137},
    arxivId = {1705.07137}
}

@article{Tzeng2014,
    title = {{Deep Domain Confusion: Maximizing for Domain Invariance}},
    year = {2014},
    author = {Tzeng, Eric and Hoffman, Judy and Zhang, Ning and Saenko, Kate and Lowell, Umass and Darrell, Trevor},
    url = {https://arxiv.org/pdf/1412.3474.pdf}
}

@article{Madani2018,
    title = {{Deep echocardiography: data-efficient supervised and semi-supervised deep learning towards automated diagnosis of cardiac disease}},
    year = {2018},
    journal = {npj Digital Medicine},
    author = {Madani, Ali and Ong, Jia Rui and Tibrewal, Anshul and Mofrad, Mohammad R. K.},
    number = {1},
    month = {12},
    volume = {1},
    publisher = {Springer Nature America, Inc},
    doi = {10.1038/s41746-018-0065-x},
    issn = {2398-6352}
}

@article{Shickel2018,
    title = {{Deep EHR : A Survey of Recent Advances in Deep Learning Techniques for Electronic Health Record}},
    year = {2018},
    journal = {IEEE Journal of Biomedical and Health Informatics},
    author = {Shickel, Benjamin and Tighe, Patrick J and Bihorac, Azra and Rashidi, Parisa},
    pages = {1--16},
    arxivId = {arXiv:1706.03446v2}
}

@article{Xiang2018,
    title = {{Deep Embedding Convolutional Neural Network for Synthesizing CT Image from T1-Weighted MR Image}},
    year = {2018},
    journal = {Medical Image Analysis},
    author = {Xiang, Lei and Wang, Qian and Jin, Xiyao and Nie, Dong and Qiao, Yu and Shen, Dinggang},
    url = {http://arxiv.org/abs/1709.02073},
    doi = {10.1016/j.media.2018.03.011},
    arxivId = {1709.02073}
}

@article{Stober,
    title = {{Deep Feature Learning for EEG Recordings}},
    year = {2015},
    journal = {Arxiv},
    author = {Stober, Sebastian and Sternin, Avtial and Owen, Adrian M and Grahn, Jessica A},
    url = {http://arxiv.org/abs/1511.04306},
    arxivId = {1511.04306}
}

@article{Mardani2017,
    title = {{Deep Generative Adversarial Networks for Compressed Sensing Automates MRI}},
    year = {2017},
    author = {Mardani, Morteza and Gong, Enhao and Cheng, Joseph Y. and Vasanawala, Shreyas and Zaharchuk, Greg and Alley, Marcus and Thakur, Neil and Han, Song and Dally, William and Pauly, John M. and Xing, Lei},
    pages = {1--12},
    url = {http://arxiv.org/abs/1706.00051},
    arxivId = {1706.00051}
}

@article{Chen2020a,
    title = {{Deep Hiearchical Multi-Label Classification Applied to Chest X-Ray Abnormality Taxonomies}},
    year = {2020},
    journal = {Medical Image Analysis},
    author = {Chen, Haomin and Miao, Shun and Xu, Daguang and Hager, Gregory D. and Harrison, Adam P.},
    month = {9},
    pages = {101811},
    publisher = {Elsevier},
    url = {https://linkinghub.elsevier.com/retrieve/pii/S1361841520301754},
    doi = {10.1016/j.media.2020.101811},
    issn = {13618415}
}

@techreport{Chen2019,
    title = {{Deep Hierarchical Multi-label Classification of Chest X-ray Images}},
    year = {2019},
    booktitle = {Proceedings of Machine Learning Research},
    author = {Chen, Haomin and Miao, Shun and Xu, Daguang and Hager, Gregory D and Harrison, Adam P and Com, Adam P Harrison@gmail},
    month = {5},
    pages = {109--120},
    volume = {102},
    publisher = {PMLR},
    url = {http://proceedings.mlr.press/v102/chen19a/chen19a.pdf http://proceedings.mlr.press/v102/chen19a.html},
    issn = {2640-3498},
    keywords = {chest x-ray, computer aided diagnosis, hierarchical multi-label classification}
}

@inproceedings{Lempitsky2018,
    title = {{Deep Image Prior}},
    year = {2018},
    booktitle = {Computer Vision and Pattern Recognition},
    author = {Lempitsky, Victor and Vedaldi, Andrea and Ulyanov, Dmitry},
    isbn = {9781538664209},
    doi = {10.1109/CVPR.2018.00984},
    issn = {10636919}
}

@article{Gordo2016,
    title = {{Deep Image Retrieval: Learning global representations for image search}},
    year = {2016},
    author = {Gordo, Albert and Almazan, Jon and Revaud, Jerome and Larlus, Diane},
    month = {4},
    url = {http://arxiv.org/abs/1604.01325},
    arxivId = {1604.01325}
}

@inproceedings{Simonyan2014,
    title = {{Deep Inside Convolutional Networks: Visualising Image Classification Models and Saliency Maps}},
    year = {2014},
    booktitle = {International Conference on Learning Representations (ICLR)},
    author = {Simonyan, Karen and Vedaldi, Andrea and Zisserman, Andrew},
    url = {http://arxiv.org/abs/1312.6034},
    arxivId = {1312.6034}
}

@article{Huang2018,
    title = {{Deep Integrative Analysis for Survival Prediction}},
    year = {2018},
    journal = {Pacific Symposium on Biocomputing},
    author = {Huang, Chenglong and Zhang, Albert and Xiao, Guanghua},
    pages = {343--352},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/29218895},
    issn = {2335-6936},
    pmid = {29218895},
    keywords = {deep learning, integrative analysis, survival prediction}
}

@article{LeCun2015,
    title = {{Deep learning}},
    year = {2015},
    journal = {Nature},
    author = {LeCun, Yann and Bengio, Yoshua and Hinton, Geoffrey E.},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.436.894&rep=rep1&type=pdf http://www.nature.com/nature/journal/v521/n7553/abs/nature14539.html http://www.scopus.com/inward/record.url?eid=2-s2.0-84930630277&partnerID=40&md5=befeefa64ddca265c713cf8},
    isbn = {3135786504},
    doi = {10.1038/nature14539},
    issn = {0028-0836},
    pmid = {26017442},
    arxivId = {arXiv:1312.6184v5}
}

@book{Goodfellow-et-al-2016,
    title = {{Deep Learning}},
    year = {2016},
    author = {Goodfellow, Ian and Bengio, Yoshua and Courville, Aaron},
    publisher = {MIT Press}
}

@article{Lakhani2017Tuberculosis,
    title = {{Deep Learning at Chest Radiography: Automated Classification of Pulmonary Tuberculosis by Using Convolutional Neural Networks}},
    year = {2017},
    journal = {Radiology},
    author = {Lakhani, Paras and Sundaram, Baskaran},
    number = {2},
    month = {8},
    pages = {574--582},
    volume = {284},
    publisher = {Radiological Society of North America},
    url = {http://pubs.rsna.org/doi/10.1148/radiol.2017162326},
    doi = {10.1148/radiol.2017162326},
    issn = {0033-8419}
}

@article{Asiri2019,
    title = {{Deep Learning based Computer-Aided Diagnosis Systems for Diabetic Retinopathy: A Survey}},
    year = {2019},
    journal = {Artificial Intelligence in Medicine},
    author = {Asiri, Norah and Hussain, Muhammad and Abualsamh, Hatim A.},
    month = {11},
    url = {http://arxiv.org/abs/1811.01238},
    arxivId = {1811.01238}
}

@inproceedings{Islam2019,
    title = {{Deep Learning based Early Detection and Grading of Diabetic Retinopathy Using Retinal Fundus Images}},
    year = {2019},
    booktitle = {Machine Learning, Image Processing, Network Security and Data Sciences},
    author = {Islam, Sheikh Muhammad Saiful and Hasan, Md Mahedi and Abdullah, Sohaib},
    month = {12},
    url = {http://arxiv.org/abs/1812.10595},
    arxivId = {1812.10595}
}

@article{Chalapathy2019a,
    title = {{Deep Learning for Anomaly Detection: A Survey}},
    year = {2019},
    author = {Chalapathy, Raghavendra and Chawla, Sanjay},
    month = {1},
    url = {http://arxiv.org/abs/1901.03407},
    arxivId = {1901.03407}
}

@techreport{Chalapathy2019,
    title = {{Deep Learning for Anomaly Detection: A Survey}},
    year = {2019},
    author = {Chalapathy, Raghavendra and Chawla, Sanjay},
    url = {https://arxiv.org/abs/1901.03407},
    arxivId = {1901.03407v2},
    keywords = {anomalies, deep learning, novelty, outlier}
}

@article{Krittanawong2019,
    title = {{Deep learning for cardiovascular medicine: a practical primer}},
    year = {2019},
    journal = {European Heart Journal},
    author = {Krittanawong, Chayakrit and Johnson, Kipp W and Rosenson, Robert S and Wang, Zhen and Aydar, Mehmet and Baber, Usman and Min, James K and Tang, W H Wilson and Halperin, Jonathan L and Narayan, Sanjiv M},
    number = {25},
    month = {7},
    pages = {2058--2073},
    volume = {40},
    url = {https://academic.oup.com/eurheartj/article/40/25/2058/5366208},
    doi = {10.1093/eurheartj/ehz056},
    issn = {0195-668X}
}

@article{Hwang2019a,
    title = {{Deep Learning for Chest Radiograph Diagnosis in the Emergency Department}},
    year = {2019},
    journal = {Radiology},
    author = {Hwang, Eui Jin and Nam, Ju Gang and Lim, Woo Hyeon and Park, Sae Jin and Jeong, Yun Soo and Kang, Ji Hee and Hong, Eun Kyoung and Kim, Taek Min and Goo, Jin Mo and Park, Sunggyun and Kim, Ki Hwan and Park, Chang Min},
    number = {3},
    month = {12},
    pages = {573--580},
    volume = {293},
    publisher = {Radiological Society of North America Inc.},
    url = {http://pubs.rsna.org/doi/10.1148/radiol.2019191225},
    doi = {10.1148/radiol.2019191225},
    issn = {0033-8419}
}

@article{Rajpurkar2018CheXNeXt,
    title = {{Deep learning for chest radiograph diagnosis: A retrospective comparison of the CheXNeXt algorithm to practicing radiologists}},
    year = {2018},
    journal = {PLOS Medicine},
    author = {Rajpurkar, Pranav and Irvin, Jeremy and Ball, Robyn L. and Zhu, Kaylie and Yang, Brandon and Mehta, Hershel and Duan, Tony and Ding, Daisy and Bagul, Aarti and Langlotz, Curtis P. and Patel, Bhavik N. and Yeom, Kristen W. and Shpanskaya, Katie and Blankenberg, Francis G. and Seekins, Jayne and Amrhein, Timothy J. and Mong, David A. and Halabi, Safwan S. and Zucker, Evan J. and Ng, Andrew Y. and Lungren, Matthew P.},
    editor = {Sheikh, Aziz},
    number = {11},
    month = {11},
    pages = {e1002686},
    volume = {15},
    publisher = {Public Library of Science},
    url = {http://dx.plos.org/10.1371/journal.pmed.1002686},
    doi = {10.1371/journal.pmed.1002686},
    issn = {1549-1676}
}

@article{Janowczyk2016,
    title = {{Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases}},
    year = {2016},
    journal = {Journal of Pathology Informatics},
    author = {Janowczyk, Andrew and Madabhushi, Anant},
    number = {1},
    pages = {29},
    volume = {7},
    publisher = {Medknow Publications and Media Pvt. Ltd.},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/27563488 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4977982 http://www.jpathinformatics.org/text.asp?2016/7/1/29/186902},
    doi = {10.4103/2153-3539.186902},
    issn = {2153-3539},
    pmid = {27563488},
    keywords = {Classification, deep learning, detection, digital histology, machine learning, segmentation}
}

@article{luck2017deep,
    title = {{Deep Learning for Patient-Specific Kidney Graft Survival Analysis}},
    year = {2017},
    journal = {arXiv:1705.10245},
    author = {Luck, Margaux and Sylvain, Tristan and Cardinal, Héloïse and Lodi, Andrea and Bengio, Yoshua},
    url = {http://arxiv.org/abs/1705.10245},
    arxivId = {1705.10245}
}

@article{MinBio2016,
    title = {{Deep Learning in Bioinformatics}},
    year = {2016},
    author = {Min, Seonwoo and Lee, Byunghan and Yoon, Sungroh},
    url = {https://arxiv.org/pdf/1603.06430.pdf}
}

@techreport{Li_Bio_2016,
    title = {{Deep learning in bioinformatics: introduction, application, and perspective in big data era}},
    year = {2016},
    author = {Li, Yu and Huang, Chao and Ding, Lizhong and Li, Zhongxiao and Pan, Yijie and Gao, Xin},
    url = {https://github.com/lykaust15/Deep_learning_examples.},
    arxivId = {1903.00342v1}
}

@article{Diamant2019,
    title = {{Deep learning in head {\&} neck cancer outcome prediction}},
    year = {2019},
    journal = {Scientific Reports},
    author = {Diamant, André and Chatterjee, Avishek and Valli{\`{e}}res, Martin and Shenouda, George and Seuntjens, Jan},
    number = {1},
    month = {12},
    pages = {2764},
    volume = {9},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/articles/s41598-019-39206-1},
    doi = {10.1038/s41598-019-39206-1},
    issn = {2045-2322},
    keywords = {Cancer, Prognosis}
}

@article{Diamant,
    title = {{Deep learning in head {\&}amp; neck cancer outcome prediction}},
    author = {Diamant, André and Chatterjee, Avishek and Valli{\`{e}}res, Martin and Shenouda, George and Seuntjens, Jan},
    url = {https://doi.org/10.1038/s41598-019-39206-1},
    doi = {10.1038/s41598-019-39206-1}
}

@article{Badgeley2019,
    title = {{Deep learning predicts hip fracture using confounding patient and healthcare variables}},
    year = {2019},
    journal = {npj Digital Medicine},
    author = {Badgeley, Marcus A. and Zech, John R. and Oakden-Rayner, Luke and Glicksberg, Benjamin S. and Liu, Manway and Gale, William and McConnell, Michael V. and Percha, Bethany and Snyder, Thomas M. and Dudley, Joel T.},
    number = {1},
    month = {12},
    pages = {1--10},
    volume = {2},
    publisher = {Springer Science and Business Media LLC},
    doi = {10.1038/s41746-019-0105-1},
    issn = {2398-6352},
    arxivId = {1811.03695},
    keywords = {Computer science, Radiography, Statistics}
}

@inproceedings{Zhang,
    title = {{Deep Learning Requires Rethinking Generalization}},
    year = {2017},
    booktitle = {International Conference on Learning Representation},
    author = {Zhang, Chiyuan and Bengio, Samy and Hardt, Moritz and Recht, Benjamin and Vinyals, Oriol},
    arxivId = {1611.03530}
}

@incollection{Urda2017,
    title = {{Deep Learning to Analyze RNA-Seq Gene Expression Data}},
    year = {2017},
    author = {Urda, D. and Montes-Torres, J. and Moreno, F. and Franco, L. and Jerez, J. M.},
    month = {6},
    pages = {50--59},
    publisher = {Springer, Cham},
    url = {http://link.springer.com/10.1007/978-3-319-59147-6_5},
    doi = {10.1007/978-3-319-59147-6{\_}5}
}

@article{Lu2019,
    title = {{Deep Learning to Assess Long-term Mortality from Chest Radiographs}},
    year = {2019},
    journal = {JAMA Network Open},
    author = {Lu, Michael T. and Ivanov, Alexander and Mayrhofer, Thomas and Hosny, Ahmed and Aerts, Hugo J.W.L. and Hoffmann, Udo},
    number = {7},
    month = {7},
    pages = {e197416-e197416},
    volume = {2},
    publisher = {American Medical Association},
    url = {https://jamanetwork.com/},
    doi = {10.1001/jamanetworkopen.2019.7416},
    issn = {25743805},
    pmid = {31322692},
    keywords = {The JAMA Network}
}

@article{Martens2010,
    title = {{Deep learning via Hessian-free optimization}},
    year = {2010},
    journal = {of the 27th International Conference on {\ldots}},
    author = {Martens, J},
    url = {http://machinelearning.wustl.edu/mlpapers/paper_files/icml2010_Martens10.pdf}
}

@article{Gordienko2018LungSegmentation,
    title = {{Deep Learning with Lung Segmentation and Bone Shadow Exclusion Techniques for Chest X-Ray Analysis of Lung Cancer}},
    year = {2018},
    journal = {Advances in Computer Science for Engineering and Education},
    author = {Gordienko, Yu. and Gang, Peng and Hui, Jiang and Zeng, Wei and Kochura, Yu. and Alienin, O and Rokovyi, O and Stirenko, S},
    month = {5},
    pages = {638–647},
    publisher = {Springer International Publishing},
    url = {http://dx.doi.org/10.1007/978-3-319-91008-6_63},
    isbn = {9783319910086},
    doi = {10.1007/978-3-319-91008-6{\_}63},
    issn = {2194-5365}
}

@article{Bar2015,
    title = {{Deep learning with non-medical training used for chest pathology identification}},
    year = {2015},
    journal = {SPIE Medical Imaging},
    author = {Bar, Yaniv and Diamant, Idit and Wolf, Lior and Greenspan, Hayit},
    url = {https://www.cs.tau.ac.il/~wolf/papers/SPIE15chest.pdf},
    keywords = {Deep learning, chest x-rays, classification, convolutional neural networks}
}

@article{Chartrand2017,
    title = {{Deep Learning: A Primer for Radiologists}},
    year = {2017},
    journal = {RadioGraphics},
    author = {Chartrand, Gabriel and Cheng, Phillip M. and Vorontsov, Eugene and Drozdzal, Michal and Turcotte, Simon and Pal, Christopher J. and Kadoury, Samuel and Tang, An},
    number = {7},
    pages = {2113--2131},
    volume = {37},
    url = {http://pubs.rsna.org/doi/10.1148/rg.2017170077},
    isbn = {1527-1323 (Electronic)
0271-5333 (Linking)},
    doi = {10.1148/rg.2017170077},
    issn = {0271-5333},
    pmid = {29131760}
}

@article{Eraslan2019,
    title = {{Deep learning: new computational modelling techniques for genomics}},
    year = {2019},
    journal = {Nature Reviews Genetics},
    author = {Eraslan, Gökcen and Avsec, Žiga and Gagneur, Julien and Theis, Fabian J.},
    number = {7},
    month = {7},
    pages = {389--403},
    volume = {20},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/articles/s41576-019-0122-6},
    doi = {10.1038/s41576-019-0122-6},
    issn = {1471-0056},
    keywords = {Genome informatics, Genomics, Learning algorithms, Machine learning, Software}
}

@article{Yan,
    title = {{Deep Lesion Graphs in the Wild: Relationship Learning and Organization of Significant Radiology Image Findings in a Diverse Large-scale Lesion Database}},
    author = {Yan, Ke and Wang, Xiaosong and Lu, Le and Zhang, Ling and Harrison, Adam and Bagheri, Mohammadhad and Summers, Ronald},
    url = {https://arxiv.org/pdf/1711.10535.pdf},
    arxivId = {arXiv:1711.10535v2}
}

@inproceedings{Wolterink2017a,
    title = {{Deep MR to CT synthesis using unpaired data}},
    year = {2017},
    booktitle = {Workshop on Simulation and Synthesis in Medical Imaging},
    author = {Wolterink, Jelmer M. and Dinkla, Anna M. and Savenije, Mark H.F. and Seevinck, Peter R. and van den Berg, Cornelis A.T. and I{\v{s}}gum, Ivana},
    pages = {14--23},
    url = {https://arxiv.org/pdf/1708.01155.pdf},
    isbn = {9783319681269},
    doi = {10.1007/978-3-319-68127-6{\_}2},
    issn = {16113349},
    pmid = {21500255},
    arxivId = {1708.01155},
    keywords = {CT synthesis, Deep learning, Generative adversarial networks, Radiotherapy, Treatment planning}
}

@misc{AI-basedEvaluation,
    title = {{AI-based methods for nuclear-medicine imaging: Need for objective task-specific evaluation}},
    url = {http://jnm.snmjournals.org/content/61/supplement_1/575}
}

@article{Sogancioglu2020CardiomegalyClassification,
    title = {{Cardiomegaly Detection on Chest Radiographs: Segmentation Versus Classification}},
    year = {2020},
    journal = {IEEE Access},
    author = {Sogancioglu, Ecem and Murphy, Keelin and Calli, Erdi and Scholten, Ernst T. and Schalekamp, Steven and Van Ginneken, Bram},
    pages = {94631--94642},
    volume = {8},
    url = {https://ieeexplore.ieee.org/document/9096290/},
    doi = {10.1109/ACCESS.2020.2995567},
    issn = {2169-3536}
}

@article{Xie2020CheXplain:Analysis,
    title = {{CheXplain: Enabling Physicians to Explore and UnderstandData-Driven, AI-Enabled Medical Imaging Analysis}},
    year = {2020},
    author = {Xie, Yao and Chen, Melody and Kao, David and Gao, Ge and Chen, Xiang 'Anthony'},
    month = {1},
    url = {http://arxiv.org/abs/2001.05149 http://dx.doi.org/10.1145/3313831.3376807},
    doi = {10.1145/3313831.3376807},
    arxivId = {2001.05149}
}
@inproceedings{he2016resnet,
    title = {{Deep Residual Learning for Image Recognition}},
    year = {2016},
    booktitle = {Conference on Computer Vision and Pattern Recognition},
    author = {He, Kaiming and Zhang, Xiangyu and Ren, Shaoqing and Sun, Jian},
    doi = {10.1109/CVPR.2016.90},
    arxivId = {1512.03385}
}

@inproceedings{Glorot2011ReLU,
    title = {{Deep sparse rectifier neural networks}},
    year = {2011},
    booktitle = {Journal of Machine Learning Research},
    author = {Glorot, Xavier and Bordes, Antoine and Bengio, Yoshua},
    month = {6},
    pages = {315--323},
    volume = {15},
    publisher = {Journal of Machine Learning Research},
    url = {http://proceedings.mlr.press/v15/glorot11a.html},
    issn = {15324435}
}

@article{ranganath2016deep,
    title = {{Deep Survival Analysis}},
    year = {2016},
    journal = {Machine Learning and Healthcare Conference},
    author = {Ranganath, Rajesh and Perotte, Adler and Elhadad, Noémie and Blei, David},
    url = {http://arxiv.org/abs/1608.02158},
    isbn = {978-3-319-66184-1},
    doi = {10.1007/978-3-319-66185-8},
    arxivId = {1608.02158}
}

@techreport{Alemi2016,
    title = {{Deep Variational Information Bottleneck}},
    year = {2016},
    author = {Alemi, Alexander A and Fischer, Ian and Dillon, Joshua V and Murphy, Kevin and Research, Google},
    url = {https://arxiv.org/abs/1612.00410},
    isbn = {1612.00410v5},
    arxivId = {1612.00410v5}
}

@article{Minaee2020covidtransferlearning,
    title = {{Deep-COVID: Predicting COVID-19 from chest X-ray images using deep transfer learning}},
    year = {2020},
    journal = {Medical Image Analysis},
    author = {Minaee, Shervin and Kafieh, Rahele and Sonka, Milan and Yazdani, Shakib and Jamalipour Soufi, Ghazaleh},
    month = {10},
    volume = {65},
    publisher = {Elsevier B.V.},
    url = {http://arxiv.org/abs/2004.09363},
    doi = {10.1016/j.media.2020.101794},
    issn = {13618423},
    pmid = {32781377},
    arxivId = {2004.09363},
    keywords = {COVID-19, Deep learning, Transfer learning, X-ray imaging}
}

@article{Hassanzadeh2016,
    title = {{DeeperBind: Enhancing Prediction of Sequence Specificities of DNA Binding Proteins}},
    year = {2016},
    author = {Hassanzadeh, Hamid Reza and Wang, May D.},
    month = {11},
    url = {http://arxiv.org/abs/1611.05777},
    arxivId = {1611.05777}
}

@article{lee2018deephit,
    title = {{DeepHit: A Deep Learning Approach to Survival Analysis with Competing Risks}},
    year = {2018},
    journal = {Association for the Advancement of Artificial Intelligence},
    author = {Lee, Changhee and Zame, William R and Yoon, Jinsung and Van Der Schaar, Mihaela},
    url = {http://medianetlab.ee.ucla.edu/papers/AAAI_2018_DeepHit}
}

@article{Lee2018,
    title = {{DeepHit: A Deep Learning Approach to Survival Analysis with Competing Risks}},
    year = {2018},
    journal = {Thirty-Second AAAI Conference on Artificial Intelligence},
    author = {Lee, Changhee and Zame, William R and Yoon, Jinsung and Van Der Schaar, Mihaela},
    url = {http://medianetlab.ee.ucla.edu/papers/AAAI_2018_DeepHit}
}

@article{Patel2017,
    title = {{DeepInteract: Deep Neural Network Based Protein-Protein Interaction Prediction Tool}},
    year = {2017},
    journal = {Current Bioinformatics},
    author = {Patel, Sunil and Tripathi, Rashmi and Kumari, Vandana and Varadwaj, Pritish},
    number = {6},
    month = {12},
    volume = {12},
    url = {http://www.eurekaselect.com/144837/article},
    doi = {10.2174/1574893611666160815150746},
    issn = {15748936}
}

@article{Deznabi2019,
    title = {{DeepKinZero: Zero-Shot Learning for Predicting Kinase-Phosphosite Associations Involving Understudied Kinases}},
    year = {2019},
    journal = {bioRxiv},
    author = {Deznabi, Iman and Arabaci, Busra and Koyut{\"{u}}rk, Mehmet and Tastan, Oznur},
    month = {6},
    pages = {670638},
    publisher = {Cold Spring Harbor Laboratory},
    url = {https://www.biorxiv.org/content/10.1101/670638v2},
    doi = {10.1101/670638}
}

@misc{dl4j,
    title = {{Deeplearning4j: Open-source distributed deep learning for the JVM}},
    year = {2015},
    author = {{Deeplearning4j Development Team}},
    url = {http://deeplearning4j.org}
}

@inproceedings{LeeDeeplySupervised2015,
    title = {{Deeply-supervised nets}},
    year = {2015},
    booktitle = {International Conference on Artificial Intelligence and Statistics (AISTATS)},
    author = {Lee, Chen Yu and Xie, Saining and Gallagher, Patrick W. and Zhang, Zhengyou and Tu, Zhuowen},
    publisher = {Microtome Publishing},
    issn = {15337928},
    arxivId = {1409.5185}
}

@article{katzman2016deep,
    title = {{DeepSurv: Personalized Treatment Recommender System Using A Cox Proportional Hazards Deep Neural Network}},
    year = {2016},
    journal = {International Conference of Machine Learning Computational Biology Workshop},
    author = {Katzman, Jared and Shaham, Uri and Cloninger, Alexander and Bates, Jonathan and Jiang, Tingting and Kluger, Yuval},
    number = {i},
    pages = {1--11},
    url = {http://arxiv.org/abs/1606.00931},
    arxivId = {1606.00931}
}

@article{Katzman2018,
    title = {{DeepSurv: Personalized treatment recommender system using a Cox proportional hazards deep neural network}},
    year = {2018},
    journal = {BMC Medical Research Methodology},
    author = {Katzman, Jared L. and Shaham, Uri and Cloninger, Alexander and Bates, Jonathan and Jiang, Tingting and Kluger, Yuval},
    number = {1},
    pages = {1--12},
    volume = {18},
    publisher = {BMC Medical Research Methodology},
    doi = {10.1186/s12874-018-0482-1},
    issn = {14712288},
    pmid = {29482517},
    arxivId = {1606.00931},
    keywords = {Deep learning, Survival analysis, Treatment recommendations}
}

@inproceedings{Lee2016,
    title = {{deepTarget: End-to-end Learning Framework for microRNA Target Prediction using Deep Recurrent Neural Networks}},
    year = {2016},
    booktitle = {BCB},
    author = {Lee, Byunghan and Baek, Junghwan and Park, Seunghyun and Yoon, Sungroh},
    url = {http://data.snu.ac.kr/pub/deepTarget},
    isbn = {9781450342254},
    doi = {10.1093/bioinformatics/xxxxxx},
    arxivId = {1603.09123},
    keywords = {Deep Learning, LSTM, RNN, microRNA}
}

@article{Wang2018b,
    title = {{DeFine: deep convolutional neural networks accurately quantify intensities of transcription factor-DNA binding and facilitate evaluation of functional non-coding variants}},
    year = {2018},
    journal = {Nucleic acids research},
    author = {Wang, Meng and Tai, Cheng and E, Weinan and Wei, Liping},
    number = {11},
    month = {6},
    pages = {e69},
    volume = {46},
    publisher = {NLM (Medline)},
    doi = {10.1093/nar/gky215},
    issn = {13624962}
}

@misc{Its.bldrdoc.gov1996,
    title = {{Definition: digital signal 0}},
    year = {1996},
    author = {{its.bldrdoc.gov}},
    url = {www.its.bldrdoc.gov http://www.its.bldrdoc.gov/fs-1037/dir-012/_1658.htm}
}

@inproceedings{Huang2017densenet,
    title = {{Densely Connected Convolutional Networks}},
    year = {2017},
    booktitle = {Computer Vision and Pattern Recognition},
    author = {Huang, Gao and Liu, Zhuang and van der Maaten, Laurens and Weinberger, Kilian Q.},
    url = {https://arxiv.org/abs/1608.06993},
    arxivId = {1608.06993}
}

@article{Esteva2017,
    title = {{Dermatologist-level classification of skin cancer with deep neural networks}},
    year = {2017},
    journal = {Nature},
    author = {Esteva, Andre and Kuprel, Brett and Novoa, Roberto A. and Ko, Justin and Swetter, Susan M. and Blau, Helen M. and Thrun, Sebastian},
    number = {7639},
    month = {2},
    pages = {115--118},
    volume = {542},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/articles/nature21056},
    doi = {10.1038/nature21056},
    issn = {0028-0836},
    keywords = {Diagnosis, Machine learning, Skin cancer}
}

@article{Ferrara2011,
    title = {{Design of Automatically Adaptable Web Wrappers}},
    year = {2011},
    journal = {Arxiv preprint arXiv:1103.1254},
    author = {Ferrara, E. and Baumgartner, R.}
}

@article{ferrara_design_2011,
    title = {{Design of Automatically Adaptable Web Wrappers}},
    year = {2011},
    journal = {Arxiv preprint {\{}arXiv{\}}:1103.1254},
    author = {Ferrara, E and Baumgartner, R}
}

@book{Gamma1994,
    title = {{Design Patterns: Elements of Reusable Object-Oriented Software}},
    shorttitle = {Design Patterns},
    year = {1994},
    author = {Gamma, Erich and Helm, Richard and Johnson, Ralph and Vlissides, John M.},
    edition = {1},
    month = {11},
    publisher = {Addison-Wesley Professional},
    url = {http://www.amazon.com/dp/0201633612},
    isbn = {0201633612}
}

@inproceedings{Lipton2018,
    title = {{Detecting and correcting for label shift with black box predictors}},
    year = {2018},
    booktitle = {International Conference on Machine Learning},
    author = {Lipton, Zachary C and Wang, Yu Xiang and Smola, Alexander J},
    volume = {7},
    isbn = {9781510867963},
    arxivId = {1802.03916}
}

@inproceedings{Ahmed2019,
    title = {{Detecting semantic anomalies}},
    year = {2019},
    booktitle = {Association for the Advancement of Artificial Intelligence},
    author = {Ahmed, Faruk and Courville, Aaron},
    month = {8},
    url = {http://arxiv.org/abs/1908.04388},
    arxivId = {1908.04388}
}

@article{Noronha2001,
    title = {{Detection and modeling of buildings from multiple aerial images}},
    year = {2001},
    journal = {Pattern Analysis and Machine Intelligence, IEEE Transactions on},
    author = {Noronha, Sanjay and Nevatia, Ramakant},
    number = {5},
    pages = {501–518},
    volume = {23},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=922708 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=922708&abstractAccess=no&userType=inst https://www.cs.drexel.edu/classes/CS/cs680-502/proj7/nevatia.pdf}
}

@inproceedings{Lin1994,
    title = {{Detection of buildings using perceptual grouping and shadows}},
    year = {1994},
    author = {Lin, C. and Huertas, A. and Nevatia, R.},
    pages = {62--69},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=323811 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=323811&abstractAccess=no&userType=}
}

@article{Shabtai2009,
    title = {{Detection of malicious code by applying machine learning classifiers on static features: A state-of-the-art survey}},
    shorttitle = {Detection of malicious code by applying machine le},
    year = {2009},
    journal = {Information Security Technical Report},
    author = {Shabtai, A. and Moskovitch, R. and Elovici, Y. and Glezer, C.},
    number = {1},
    pages = {16–29},
    volume = {14},
    url = {http://www.sciencedirect.com/science/article/pii/S1363412709000041}
}

@article{Bandeira2011,
    title = {{Detection of sub-kilometer craters in high resolution planetary images using shape and texture features}},
    year = {2011},
    journal = {Advances in Space Research},
    author = {Bandeira, L. and Ding, W. and Stepinski, T. F.},
    url = {http://www.sciencedirect.com/science/article/pii/S027311771100617X}
}

@article{tao2016detectnet,
    title = {{Detectnet: Deep neural network for object detection in digits}},
    year = {2016},
    journal = {Parallel Forall},
    author = {Tao, A and Barker, J and Sarathy, S},
    volume = {4}
}

@article{Hwang2019,
    title = {{Development and Validation of a Deep Learning–Based Automated Detection Algorithm for Major Thoracic Diseases on Chest Radiographs}},
    year = {2019},
    journal = {JAMA Network Open},
    author = {Hwang, Eui Jin and Park, Sunggyun and Jin, Kwang-Nam and Kim, Jung Im and Choi, So Young and Lee, Jong Hyuk and Goo, Jin Mo and Aum, Jaehong and Yim, Jae-Joon and Cohen, Julien G. and Ferretti, Gilbert R. and Park, Chang Min},
    number = {3},
    month = {3},
    pages = {e191095},
    volume = {2},
    publisher = {American Medical Association},
    url = {http://jamanetworkopen.jamanetwork.com/article.aspx?doi=10.1001/jamanetworkopen.2019.1095},
    doi = {10.1001/jamanetworkopen.2019.1095},
    issn = {2574-3805},
    keywords = {abnormal test results, active tuberculosis, cancer, chest x-ray, craniosynostosis, cytokine release syndrome, datasets, deep learning, lung, lung compliance, pneumonia, pneumothorax, radiologists, thoracic diseases, workflow}
}

@inproceedings{Li2010,
    title = {{Development of a Lunar Astronaut Spatial Orientation and Information System (LASOIS)}},
    year = {2010},
    author = {Li, Ron and He, Shaojun and Skopljak, Boris and Jiang, Jinwei and Tang, Pingbo and Yilmaz, Alper and Banks, Martin and Oman, Charles},
    url = {ftp://ftp4cast.chapman.edu/private/publications/ASPRS-2010-April/Li_R.pdf}
}

@article{Boucher2002,
    title = {{Development of a semi automatic system for pollen recognition}},
    year = {2002},
    journal = {Aerobiologia},
    author = {Boucher, A and Hidalgo, P and Thonnnt, M and Belmonte, J and Galan, C and Bonton, P and Tomczak, R},
    number = {3-4},
    pages = {195--201},
    volume = {18},
    url = {/2002/BHTBGBT02\nhttp://www.sciencedirect.com/science/article/pii/S107731421300091X},
    keywords = {3d study, aerobiology, automatic pollen counting, automatic pollen recognition, colour image analysis, light microscopy, pollen morphology}
}

@article{Wang2017,
    title = {{Diabetic Retinopathy Detection via Deep Convolutional Networks for Discriminative Localization and Visual Explanation}},
    year = {2017},
    author = {Wang, Zhiguang and Yang, Jianbo},
    month = {3},
    url = {http://arxiv.org/abs/1703.10757},
    arxivId = {1703.10757}
}

@inproceedings{Wang2018a,
    title = {{Diabetic Retinopathy Detection via Deep Convolutional Networks for Discriminative Localization and Visual Explanation}},
    year = {2018},
    booktitle = {Association for the Advancement of Artificial Intelligence},
    author = {Wang, Zhiguang and Yang, Jianbo},
    month = {3},
    url = {http://arxiv.org/abs/1703.10757},
    arxivId = {1703.10757}
}

@article{Bejnordi2017,
    title = {{Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer}},
    year = {2017},
    journal = {JAMA - Journal of the American Medical Association},
    author = {Bejnordi, Babak Ehteshami and Veta, Mitko and Van Diest, Paul Johannes and Van Ginneken, Bram and Karssemeijer, Nico and Litjens, Geert and Van Der Laak, Jeroen A.W.M. and Hermsen, Meyke and Manson, Quirine F. and Balkenhol, Maschenka and Geessink, Oscar and Stathonikos, Nikolaos and Van Dijk, Marcory C.R.F. and Bult, Peter and Beca, Francisco and Beck, Andrew H. and Wang, Dayong and Khosla, Aditya and Gargeya, Rishab and Irshad, Humayun and Zhong, Aoxiao and Dou, Qi and Li, Quanzheng and Chen, Hao and Lin, Huang Jing and Heng, Pheng Ann and Ha{\ss}, Christian and Bruni, Elia and Wong, Quincy and Halici, Ugur and {\"{O}}ner, Mustafa Ümit and Cetin-Atalay, Rengul and Berseth, Matt and Khvatkov, Vitali and Vylegzhanin, Alexei and Kraus, Oren and Shaban, Muhammad and Rajpoot, Nasir and Awan, Ruqayya and Sirinukunwattana, Korsuk and Qaiser, Talha and Tsang, Yee Wah and Tellez, David and Annuscheit, Jonas and Hufnagl, Peter and Valkonen, Mira and Kartasalo, Kimmo and Latonen, Leena and Ruusuvuori, Pekka and Liimatainen, Kaisa and Albarqouni, Shadi and Mungal, Bharti and George, Ami and Demirci, Stefanie and Navab, Nassir and Watanabe, Seiryo and Seno, Shigeto and Takenaka, Yoichi and Matsuda, Hideo and Phoulady, Hady Ahmady and Kovalev, Vassili and Kalinovsky, Alexander and Liauchuk, Vitali and Bueno, Gloria and Fernandez-Carrobles, M. Milagro and Serrano, Ismael and Deniz, Oscar and Racoceanu, Daniel and Ven{\^{a}}ncio, Rui},
    number = {22},
    month = {12},
    pages = {2199--2210},
    volume = {318},
    publisher = {American Medical Association},
    doi = {10.1001/jama.2017.14585},
    issn = {15383598},
    pmid = {29234806}
}

@article{turakhia2013diagnostic,
    title = {{Diagnostic utility of a novel leadless arrhythmia monitoring device}},
    year = {2013},
    journal = {The American journal of cardiology},
    author = {Turakhia, Mintu P and Hoang, Donald D and Zimetbaum, Peter and Miller, Jared D and Froelicher, Victor F and Kumar, Uday N and Xu, Xiangyan and Yang, Felix and Heidenreich, Paul A},
    number = {4},
    pages = {520--524},
    volume = {112},
    publisher = {Elsevier}
}

@article{Romero2010,
    title = {{Diet Networks: Thin Parameters for Fat Genomic}},
    year = {2010},
    journal = {ICLR},
    author = {Romero, Adriana and Carrier, Pierre Luc and Erraqabi, Akram and Sylvain, Tristan and Auvolat, Alex and Dejoie, Etienne and Legault, Marc-André and Hussin, Julie G. and Bengio, Yoshua},
    number = {109},
    month = {11},
    pages = {110--110},
    url = {http://arxiv.org/abs/1611.09340},
    arxivId = {1611.09340},
    keywords = {crosstalk, fext, modelling, next, twisted pair}
}

@techreport{Heneghan2020viralfrombacterialCEBM,
    title = {{Differentiating viral from bacterial pneumonia}},
    year = {2020},
    author = {Heneghan, Carl and Pluddemann, Annette and Mahtani, Kamal R.},
    url = {https://www.cebm.net/covid-19/differentiating-viral-from-bacterial-pneumonia/},
    institution = {Centre for Evidence-Based Medicine, Nuffield Department of Primary Care Health Sciences University of Oxford}
}

@article{Atwood2015,
    title = {{Diffusion-Convolutional Neural Networks}},
    year = {2015},
    author = {Atwood, James and Towsley, Don},
    url = {http://arxiv.org/abs/1511.02136},
    issn = {10495258},
    arxivId = {1511.02136}
}

@article{Gulch2000,
    title = {{Digital systems for automated cartographic feature extraction}},
    year = {2000},
    journal = {International Archives of Photogrammetry and Remote Sensing},
    author = {Gulch, E.},
    number = {B2; PART 2},
    pages = {241--256},
    volume = {33},
    url = {http://www.isprs.org/proceedings/XXXIII/congress/part2/241_XXXIII-part2.pdf}
}

@article{VanDerMaaten2009,
    title = {{Dimensionality Reduction: A Comparative Review}},
    year = {2009},
    journal = {Journal of Machine Learning Research},
    author = {Van Der Maaten, L J P and Postma, E O and Van Den Herik, H J},
    url = {https://lvdmaaten.github.io/publications/papers/TR_Dimensionality_Reduction_Review_2009.pdf},
    doi = {10.1080/13506280444000102},
    issn = {0169328X},
    pmid = {7877450}
}

@article{Soffa2004,
    title = {{Disagreement in interpretation: A method for the development of benchmarks for quality assurance in imaging}},
    year = {2004},
    journal = {Journal of the American College of Radiology},
    author = {Soffa, David J. and Lewis, Rebecca S. and Sunshine, Jonathan H. and Bhargavan, Mythreyi},
    number = {3},
    pages = {212--217},
    volume = {1},
    publisher = {Elsevier B.V.},
    doi = {10.1016/j.jacr.2003.12.017},
    issn = {15461440},
    keywords = {Disagreement rate, Imaging, Interpretation, Observer performance, Quality assurance, Self-referral}
}

@article{Lopez-Paz2016,
    title = {{Discovering Causal Signals in Images}},
    year = {2016},
    author = {Lopez-Paz, David and Nishihara, Robert and Chintala, Soumith and Sch{\"{o}}lkopf, Bernhard and Bottou, Léon},
    month = {5},
    url = {http://arxiv.org/abs/1605.08179},
    arxivId = {1605.08179}
}

@inproceedings{Sivic2005,
    title = {{Discovering objects and their location in images}},
    year = {2005},
    author = {Sivic, Josef and Russell, Bryan C. and Efros, Alexei A. and Zisserman, Andrew and Freeman, William T.},
    pages = {370–377},
    volume = {1},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1541280 http://repository.cmu.edu/cgi/viewcontent.cgi?article=1285&context=robotics}
}

@article{Ding2009,
    title = {{Discovery of feature-based hot spots using supervised clustering}},
    year = {2009},
    journal = {Computers {\&} Geosciences},
    author = {Ding, Wei and Stepinski, Tomasz F. and Parmar, Rachana and Jiang, Dan and Eick, Christoph F.},
    number = {7},
    pages = {1508–1516},
    volume = {35},
    url = {http://www.sciencedirect.com/science/article/pii/S0098300409000430}
}

@article{Newton1930,
    title = {{Discovery of the Dispersion of Light and of the Nature of Color (1672)}},
    year = {1930},
    journal = {Isis},
    author = {Newton, Isaac and Sarton, George},
    number = {2},
    month = {10},
    pages = {326--341},
    volume = {14},
    url = {http://www.jstor.org/stable/224679 http://www.jstor.org/stable/pdfplus/224679.pdf?acceptTC=true},
    issn = {0021-1753}
}

@misc{Brady2012,
    title = {{Discrepancy and error in radiology: Concepts, causes and consequences}},
    year = {2012},
    booktitle = {Ulster Medical Journal},
    author = {Brady, Adrian and Laoide, Risteárd Ó and McCarthy, Peter and McDermott, Ronan},
    number = {1},
    month = {1},
    pages = {3--9},
    volume = {81},
    issn = {00416193},
    pmid = {23536732}
}

@book{Rosen2011,
    title = {{Discrete Mathematics and Its Applications 7th edition}},
    year = {2011},
    author = {Rosen, Kenneth},
    publisher = {McGraw-Hill Science},
    url = {http://eng.uok.ac.ir/daneshfar/disceretstructures/lec12.pdf}
}

@book{rosen_discrete_2011,
    title = {{Discrete {\{}Mathematics{\}} and {\{}Its{\}} {\{}Applications{\}} 7th edition}},
    year = {2011},
    author = {Rosen, Kenneth},
    publisher = {McGraw-Hill Science}
}

@article{Dai2016,
    title = {{Discriminative Embeddings of Latent Variable Models for Structured Data}},
    year = {2016},
    author = {Dai, Hanjun and Dai, Bo and Song, Le},
    url = {http://arxiv.org/abs/1603.05629},
    arxivId = {1603.05629}
}

@incollection{Mairal2008,
    title = {{Discriminative sparse image models for class-specific edge detection and image interpretation}},
    year = {2008},
    author = {Mairal, Julien and Leordeanu, Marius and Bach, Francis and Hebert, Martial and Ponce, Jean},
    pages = {43–56},
    publisher = {Springer},
    url = {http://link.springer.com/chapter/10.1007/978-3-540-88690-7_4 http://eprints.pascal-network.org/archive/00004520/01/mairal_eccv08.pdf}
}

@article{Miladinovic2019,
    title = {{Disentangled State Space Representations}},
    year = {2019},
    author = {Miladinovi{\'{c}}, Đorđe and Gondal, Muhammad Waleed and Sch{\"{o}}lkopf, Bernhard and Buhmann, Joachim M. and Bauer, Stefan},
    month = {6},
    url = {http://arxiv.org/abs/1906.03255},
    arxivId = {1906.03255}
}

@article{Hinton2015,
    title = {{Distilling the Knowledge in a Neural Network}},
    year = {2015},
    author = {Hinton, Geoffrey and Vinyals, Oriol and Dean, Jeff},
    url = {https://arxiv.org/pdf/1503.02531.pdf},
    arxivId = {arXiv:1503.02531v1},
    keywords = {()}
}

@article{hinton2015distilling,
    title = {{Distilling the knowledge in a neural network}},
    year = {2015},
    journal = {arXiv preprint arXiv:1503.02531},
    author = {Hinton, Geoffrey and Vinyals, Oriol and Dean, Jeff}
}

@article{Lowe2004,
    title = {{Distinctive image features from scale-invariant keypoints}},
    year = {2004},
    journal = {International journal of computer vision},
    author = {Lowe, D.G. David G.},
    number = {2},
    pages = {91–110},
    volume = {60},
    url = {http://link.springer.com/article/10.1023/B:VISI.0000029664.99615.94 http://zenithlib.googlecode.com/svn/trunk/papers/cv/ijcv/2004-Distinctive_Image_Features_from_Scale-Invariant_Keypoints.pdf}
}

@inproceedings{cohen2018distribution,
    title = {{Distribution Matching Losses Can Hallucinate Features in Medical Image Translation}},
    year = {2018},
    booktitle = {Medical Image Computing {\&} Computer Assisted Intervention (MICCAI)},
    author = {Cohen, Joseph Paul and Luck, Margaux and Honari, Sina},
    url = {https://arxiv.org/abs/1805.08841}
}

@article{Azam2012,
    title = {{Distribution of biological databases over lowbandwidth networks}},
    year = {2012},
    journal = {Bioinformation},
    author = {Azam, S Sikander and Zarina, Shamshad},
    month = {3},
    url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3314880/ http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3314880/pdf/97320630008239.pdf},
    doi = {10.6026/97320630008239},
    issn = {0973-8894}
}

@article{Ng2017,
    title = {{dna2vec: Consistent vector representations of variable-length k-mers}},
    year = {2017},
    journal = {arXiv:1701.06279},
    author = {Ng, Patrick},
    url = {https://pnpnpn.github.io/dna2vec/},
    arxivId = {arXiv:1701.06279v1}
}

@inproceedings{Nalisnick2019,
    title = {{Do deep generative models know what they don't know?}},
    year = {2019},
    booktitle = {International Conference on Learning Representations},
    author = {Nalisnick, Eric and Matsukawa, Akihiro and Teh, Yee Whye and Gorur, Dilan and Lakshminarayanan, Balaji},
    month = {10},
    url = {http://arxiv.org/abs/1810.09136},
    arxivId = {1810.09136}
}

@article{Arora2017,
    title = {{Do GANs actually learn the distribution? An empirical study}},
    year = {2017},
    author = {Arora, Sanjeev and Zhang, Yi},
    url = {https://arxiv.org/abs/1706.08224}
}

@inproceedings{Bertrand2019lateralviews,
    title = {{Do Lateral Views Help Automated Chest X-ray Predictions?}},
    year = {2019},
    booktitle = {Medical Imaging with Deep Learning Abstract},
    author = {Bertrand, Hadrien and Hashir, Mohammad and Cohen, Joseph Paul},
    month = {4},
    url = {https://arxiv.org/abs/1904.08534},
    arxivId = {1904.08534}
}

@techreport{ChristinaVonBastian2008,
    title = {{Do multi-view X-ray systems improve X-ray image in-terpretation in airport security screening?}},
    year = {2008},
    author = {Christina Von Bastian, Claudia and Schwaninger, Adrian and Michel, Stefan},
    keywords = {X-ray imaging, aviation security, display technologies, human machine interaction, object recognition, visual psychophysics}
}

@article{Wiens2019,
    title = {{Do no harm: a roadmap for responsible machine learning for health care}},
    year = {2019},
    journal = {Nature Medicine},
    author = {Wiens, Jenna and Saria, Suchi and Sendak, Mark and Ghassemi, Marzyeh and Liu, Vincent X. and Doshi-Velez, Finale and Jung, Kenneth and Heller, Katherine and Kale, David and Saeed, Mohammed and Ossorio, Pilar N. and Thadaney-Israni, Sonoo and Goldenberg, Anna},
    month = {8},
    pages = {1--4},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/articles/s41591-019-0548-6},
    doi = {10.1038/s41591-019-0548-6},
    issn = {1078-8956},
    keywords = {Health care, Research management, Scientific community}
}

@article{Wiens2019a,
    title = {{Do no harm: a roadmap for responsible machine learning for health care}},
    year = {2019},
    journal = {Nature Medicine},
    author = {Wiens, Jenna and Saria, Suchi and Sendak, Mark and Ghassemi, Marzyeh and Liu, Vincent X. and Doshi-Velez, Finale and Jung, Kenneth and Heller, Katherine and Kale, David and Saeed, Mohammed and Ossorio, Pilar N. and Thadaney-Israni, Sonoo and Goldenberg, Anna},
    number = {9},
    month = {8},
    pages = {1337--1340},
    volume = {25},
    publisher = {Nature Publishing Group},
    url = {https://www.nature.com/articles/s41591-019-0548-6},
    doi = {10.1038/s41591-019-0548-6},
    issn = {1546170X},
    pmid = {31427808},
    keywords = {Health care, Research management, Scientific community}
}

@inproceedings{Choi2015,
    title = {{Doctor AI: Predicting Clinical Events via Recurrent Neural Networks}},
    year = {2015},
    booktitle = {Machine Learning for Healthcare},
    author = {Choi, Edward and Bahadori, Mohammad Taha and Schuetz, Andy and Stewart, Walter F},
    url = {https://arxiv.org/pdf/1511.05942v11.pdf}
}

@misc{NationalScienceFoundation2015,
    title = {{Doctorate Recipients from U.S. Universities}},
    year = {2015},
    author = {{National Science Foundation}},
    url = {www.nsf.gov/statistics/2017/nsf17306/.},
    doi = {NSF 17-306}
}

@inproceedings{Chidlovskii2006,
    title = {{Documentum ECI self-repairing wrappers: performance analysis}},
    year = {2006},
    author = {Chidlovskii, B. and Roustant, B. and Brette, M.}
}

@inproceedings{Chidlovskii2006b,
    title = {{Documentum ECI self-repairing wrappers: performance analysis}},
    year = {2006},
    author = {Chidlovskii, B. and Roustant, B. and Brette, M.},
    pages = {708–717}
}

@article{Hartmann1984,
    title = {{Does crater “saturation equilibrium” occur in the solar system?}},
    year = {1984},
    journal = {Icarus},
    author = {Hartmann, William K.},
    number = {1},
    month = {10},
    pages = {56--74},
    volume = {60},
    url = {http://www.sciencedirect.com/science/article/pii/0019103584901386},
    doi = {10.1016/0019-1035(84)90138-6},
    issn = {0019-1035}
}

@article{Witten2001,
    title = {{Does open source improve system security?}},
    year = {2001},
    journal = {IEEE Software,},
    author = {Witten, B. and Landwehr, C. and Caloyannides, M.},
    pages = {57–61},
    url = {http://www.computer.org/portal/web/csdl/doi/10.1109/52.951496}
}

@article{Shafaei2018,
    title = {{Does Your Model Know the Digit 6 Is Not a Cat? A Less Biased Evaluation of "Outlier" Detectors}},
    year = {2018},
    journal = {arxiv},
    author = {Shafaei, Alireza and Schmidt, Mark and Little, James J.},
    month = {9},
    url = {http://arxiv.org/abs/1809.04729},
    arxivId = {1809.04729}
}

@article{Valindria2018,
    title = {{Domain Adaptation for MRI Organ Segmentation using Reverse Classification Accuracy}},
    year = {2018},
    author = {Valindria, Vanya V. and Lavdas, Ioannis and Bai, Wenjia and Kamnitsas, Konstantinos and Aboagye, Eric O. and Rockall, Andrea G. and Rueckert, Daniel and Glocker, Ben},
    month = {6},
    url = {http://arxiv.org/abs/1806.00363},
    doi = {10.1016/j.foodhyd.2011.02.017},
    issn = {0268-005X},
    arxivId = {1806.00363}
}

@article{Csurka2017,
    title = {{Domain Adaptation for Visual Applications: A Comprehensive Survey}},
    year = {2017},
    author = {Csurka, Gabriela},
    month = {2},
    url = {http://arxiv.org/abs/1702.05374 https://arxiv.org/pdf/1702.05374.pdf},
    arxivId = {1702.05374}
}

@article{Long2017,
    title = {{Domain Adaptation with Randomized Multilinear Adversarial Networks}},
    year = {2017},
    author = {Long, Mingsheng and Cao, Zhangjie and Wang, Jianmin and Kliss, Michael I Jordan and Tnlist, Moe},
    url = {https://arxiv.org/pdf/1705.10667.pdf}
}

@article{Bousmalis2016,
    title = {{Domain Separation Networks}},
    year = {2016},
    author = {Bousmalis, Konstantinos and Trigeorgis, George and Silberman, Nathan and Krishnan, Dilip and Erhan, Dumitru},
    url = {https://arxiv.org/pdf/1608.06019.pdf}
}

@misc{Knuth2003,
    title = {{Donald Knuth: Editorial Board, Journal of Algorithms}},
    year = {2003},
    author = {Knuth, Donald E.},
    month = {10},
    url = {http://www-cs-faculty.stanford.edu/~uno/joalet.pdf}
}

@article{Gregor2015,
    title = {{DRAW: A Recurrent Neural Network For Image Generation}},
    year = {2015},
    journal = {arXiv preprint},
    author = {Gregor, Karol and Danihelka, Ivo and Graves, Alex and Wierstra, Daan},
    month = {2},
    pages = {1--16},
    url = {http://arxiv.org/abs/1502.04623},
    isbn = {9781510810587},
    arxivId = {arXiv:1502.04623v1}
}

@article{Srivastava2014,
    title = {{Dropout: A Simple Way to Prevent Neural Networks from Overfitting}},
    year = {2014},
    journal = {Journal of Machine Learning Research},
    author = {Srivastava, Nitish and Hinton, Geoffrey and Krizhevsky, Alex and Sutskever, Ilya and Salakhutdinov, Ruslan},
    pages = {1929--1958},
    volume = {15},
    url = {http://jmlr.org/papers/volume15/srivastava14a.old/srivastava14a.pdf},
    keywords = {deep learning, model combination, neural networks, regularization}
}

@article{Philips2005,
    title = {{DrosophilaRNAi screen reveals CD36 family member required for mycobacterial infection.}},
    year = {2005},
    journal = {Science},
    author = {Philips, J A and Rubin, E J and Perrimon, N},
    volume = {309},
    url = {http://dx.doi.org/10.1126/science.1116006},
    doi = {10.1126/science.1116006}
}

@article{Xia2016,
    title = {{Dual Learning for Machine Translation}},
    year = {2016},
    author = {Xia, Yingce and He, Di and Qin, Tao and Wang, Liwei and Yu, Nenghai and Liu, Tie-Yan and Ma, Wei-Ying},
    month = {11},
    url = {http://arxiv.org/abs/1611.00179},
    arxivId = {1611.00179}
}

@inproceedings{Simonovsky2017,
    title = {{Dynamic Edge-Conditioned Filters in Convolutional Neural Networks on Graphs}},
    year = {2017},
    booktitle = {Computer Vision and Pattern Recognition},
    author = {Simonovsky, Martin and Komodakis, Nikos},
    month = {4},
    url = {http://arxiv.org/abs/1704.02901},
    arxivId = {1704.02901}
}

@article{ASH1989,
    title = {{Dynamic Node Creation in Backpropagation Networks}},
    year = {1989},
    journal = {Connection Science},
    author = {ASH, TIMUR},
    number = {4},
    month = {1},
    pages = {365--375},
    volume = {1},
    url = {http://dx.doi.org/10.1080/09540098908915647 http://cyber.sci-hub.io/MTAuMTA4MC8wOTU0MDA5ODkwODkxNTY0Nw==/ash1989.pdf http://www.tandfonline.com/doi/abs/10.1080/09540098908915647},
    doi = {10.1080/09540098908915647},
    issn = {0954-0091}
}

@article{Sakoe1978,
    title = {{Dynamic programming algorithm optimization for spoken word recognition}},
    year = {1978},
    journal = {Acoustics, Speech and Signal Processing, IEEE Transactions on},
    author = {Sakoe, H. and Chiba, S.},
    number = {1},
    pages = {43–49},
    volume = {26},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1163055 http://www.laps.ufpa.br/aldebaro/classes/03asr2sem/documentation/papers/dtw-sakoe-chiba78.pdf}
}

@article{Sigal2006,
    title = {{Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins.}},
    year = {2006},
    journal = {Nat Methods},
    author = {Sigal, A and Milo, R and Cohen, A and Geva-Zatorsky, N and Klein, Y and Alaluf, I and Swerdlin, N and Perzov, N and Danon, T and Liron, Y},
    volume = {3},
    url = {http://dx.doi.org/10.1038/nmeth892},
    doi = {10.1038/nmeth892}
}

@article{Sabour,
    title = {{Dynamic Routing Between Capsules}},
    author = {Sabour, Sara and Frosst, Nicholas and Hinton, Geoffrey E and Toronto, Google Brain},
    url = {https://arxiv.org/pdf/1710.09829.pdf}
}

@inproceedings{Guo2018,
    title = {{Dynamic Task Prioritization for Multitask Learning}},
    year = {2018},
    booktitle = {European Conference on Computer Vision},
    author = {Guo, Michelle and Haque, Albert and Huang, De An and Yeung, Serena and Fei-Fei, Li},
    url = {http://link.springer.com/10.1007/978-3-030-01270-0_17},
    isbn = {9783030012694},
    doi = {10.1007/978-3-030-01270-0{\_}17},
    issn = {16113349}
}

@misc{Jakubczak2010,
    title = {{Dythr}},
    year = {2010},
    author = {Jakubczak, Szymon},
    url = {http://szym.net/dythr/}
}

@misc{Smeeton1985,
    title = {{Early History of the Kappa Statistic}},
    year = {1985},
    booktitle = {Biometrics},
    author = {Smeeton, Nigel C.},
    volume = {41},
    publisher = {International Biometric Society},
    url = {https://www.jstor.org/stable/2531300},
    doi = {10.2307/2531300}
}

@article{Mahsereci2017,
    title = {{Early Stopping without a Validation Set}},
    year = {2017},
    author = {Mahsereci, Maren and Balles, Lukas and Lassner, Christoph and Hennig, Philipp},
    month = {3},
    url = {http://arxiv.org/abs/1703.09580},
    arxivId = {1703.09580}
}

@article{Brunner2010,
    title = {{Earthquake damage assessment of buildings using VHR optical and SAR imagery}},
    year = {2010},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Brunner, Dominik and Lemoine, Guido and Bruzzone, Lorenzo},
    number = {5},
    pages = {2403–2420},
    volume = {48},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5411791 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5411791&abstractAccess=no&userType=inst http://rslab.disi.unitn.it/papers/R83-TGRS-Brunner.pdf}
}

@inproceedings{Karpagachelvi2010,
    title = {{ECG Feature Extraction Techniques - A Survey Approach}},
    year = {2010},
    booktitle = {International Journal of Computer Science and Information Security},
    author = {Karpagachelvi, S. and Arthanari, M. and Sivakumar, M.},
    url = {http://arxiv.org/abs/1005.0957},
    arxivId = {1005.0957}
}

@inproceedings{Kachuee2018,
    title = {{ECG heartbeat classification: A deep transferable representation}},
    year = {2018},
    booktitle = {International Conference on Healthcare Informatics},
    author = {Kachuee, Mohammad and Fazeli, Shayan and Sarrafzadeh, Majid},
    month = {4},
    url = {http://arxiv.org/abs/1805.00794 http://dx.doi.org/10.1109/ICHI.2018.00092},
    isbn = {9781538653777},
    doi = {10.1109/ICHI.2018.00092},
    arxivId = {1805.00794},
    keywords = {Deep learning, Electrocardiogram (ECG), Heartbeat classification, Myocardial infraction, Transfer learning}
}

@article{Houssein2017,
    title = {{ECG signals classification: a review}},
    year = {2017},
    journal = {International Journal of Intelligent Engineering Informatics},
    author = {Houssein, Essam H. and Kilany, Moataz and Hassanien, Aboul Ella},
    number = {4},
    pages = {376},
    volume = {5},
    publisher = {Inderscience Publishers},
    doi = {10.1504/ijiei.2017.087944},
    issn = {1758-8715}
}

@inproceedings{Salloum2017,
    title = {{ECG-based biometrics using recurrent neural networks}},
    year = {2017},
    booktitle = {2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},
    author = {Salloum, Ronald and Kuo, C.-C. Jay},
    month = {3},
    pages = {2062--2066},
    publisher = {IEEE},
    url = {http://ieeexplore.ieee.org/document/7952519/},
    isbn = {978-1-5090-4117-6},
    doi = {10.1109/ICASSP.2017.7952519}
}

@article{Kim2017ecg,
    title = {{ECG-ViEW II, a freely accessible electrocardiogram database.}},
    year = {2017},
    journal = {PloS one},
    author = {Kim, Young-Gun and Shin, Dahye and Park, Man Young and Lee, Sukhoon and Jeon, Min Seok and Yoon, Dukyong and Park, Rae Woong},
    number = {4},
    volume = {12},
    publisher = {Public Library of Science},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/28437484 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5402933},
    doi = {10.1371/journal.pone.0176222},
    issn = {1932-6203},
    pmid = {28437484}
}

@inproceedings{Chen2019,
    title = {{ECGadv: Generating Adversarial Electrocardiogram to Misguide Arrhythmia Classification System}},
    year = {2019},
    booktitle = {Association for the Advancement of Artificial Intelligence},
    author = {Chen, Huangxun and Huang, Chenyu and Huang, Qianyi and Zhang, Qian and Wang, Wei},
    month = {1},
    url = {http://arxiv.org/abs/1901.03808},
    arxivId = {1901.03808}
}

@phdthesis{pradhananga_effective_2007,
    title = {{Effective linear-time feature selection}},
    year = {2007},
    author = {Pradhananga, Nripendra},
    url = {http://scholar.google.com/scholar_url?url=http%253A%252F%252Fciteseerx.ist.psu.edu%252Fviewdoc%252Fdownload%253Fdoi%253D10.1.1.96.1703%2526rep%253Drep1%2526type%253Dpdf&hl=en&sa=T&oi=ggp&ct=res&cd=16&ei=YhPdVJyiAeLC0QGq3YDICA&scisig=AAGBfm1xiMRY-cZKi8uW8O},
    school = {Citeseer}
}

@techreport{Haider2018,
    title = {{Effective Ways to Build and Evaluate Individual Survival Distributions}},
    year = {2018},
    author = {Haider, Humza and Hoehn, Bret and Davis, Sarah and Greiner, Russell},
    url = {https://arxiv.org/pdf/1811.11347.pdf},
    arxivId = {1811.11347v1},
    keywords = {Survival analysis, calibration, discrimination 1, patient specific survival prediction, risk model}
}

@article{Myllymaki2002b,
    title = {{Effective Web data extraction with standard XML technologies}},
    year = {2002},
    journal = {Computer Networks},
    author = {Myllymaki, J.},
    number = {5},
    pages = {635–644},
    volume = {39}
}

@article{myllymaki_effective_2002,
    title = {{Effective Web data extraction with standard {\{}XML{\}} technologies}},
    year = {2002},
    journal = {Computer Networks},
    author = {Myllymaki, J}
}

@inproceedings{Cheung2012,
    title = {{Effectiveness of Cybersecurity Competitions}},
    year = {2012},
    booktitle = {Proceedings of the International Conference on Security and Management (SAM)},
    author = {Cheung, Ronald S. and Cohen, Joseph Paul and Lo, Henry Z. and Elia, Fabio and Carrillo-Marquez, Veronica},
    month = {7},
    pages = {1},
    volume = {1},
    publisher = {SAM 2012},
    url = {http://josephpcohen.com/papers/seccomp.pdf http://world-comp.org/p2012/SAM6108.pdf},
    address = {Las Vegas, Nevada, USA}
}

@article{Poulin1994,
    title = {{Effects of fixation method on image cytometric measurement of DNA content and distribution in cells stained for fluorescence with propidium iodide.}},
    year = {1994},
    journal = {J Histochem Cytochem},
    author = {Poulin, N M and Matthews, J B and Skov, K A and Palcic, B},
    volume = {42},
    url = {http://dx.doi.org/10.1177/42.8.8027534},
    doi = {10.1177/42.8.8027534}
}

@article{Castanon2015,
    title = {{Efficient Activity Retrieval through Semantic Graph Queries}},
    year = {2015},
    journal = {Proceedings of the 23rd ACM International Conference on Multimedia},
    author = {Casta{\~{n}}{\'{o}}n, Gregory and Chen, Yuting and Zhang, Ziming and Saligrama, Venkatesh},
    pages = {391--400},
    isbn = {9781450334594},
    doi = {10.1145/2733373.2806229}
}

@inproceedings{Almuallim1991,
    title = {{Efficient algorithms for identifying relevant features}},
    year = {1991},
    author = {Almuallim, H. and Dietterich, T. G},
    pages = {38--45}
}

@article{LeCun1998,
    title = {{Efficient backprop}},
    year = {1998},
    journal = {Neural networks: tricks of the trade},
    author = {LeCun, YA and Bottou, L and Orr, GB and M{\"{u}}ller, KR},
    isbn = {9788578110796},
    doi = {10.1017/CBO9781107415324.004},
    issn = {1098-6596},
    pmid = {25246403},
    arxivId = {arXiv:1011.1669v3},
    keywords = {icle}
}

@inproceedings{Adamek2003,
    title = {{Efficient Contour-based Shape Representation and Matching}},
    year = {2003},
    author = {Adamek, Tomasz and O'Connor, Noel},
    pages = {138–143},
    series = {MIR '03},
    publisher = {ACM},
    url = {http://doi.acm.org/10.1145/973264.973287 http://dl.acm.org/ft_gateway.cfm?id=973287&type=pdf},
    address = {New York, NY, USA},
    isbn = {1-58113-778-8},
    doi = {10.1145/973264.973287}
}

@article{Pasa2019-CXR-TB-DL,
    title = {{Efficient Deep Network Architectures for Fast Chest X-Ray Tuberculosis Screening and Visualization}},
    year = {2019},
    journal = {Scientific Reports},
    author = {Pasa, F and Golkov, V and Pfeiffer, F and Cremers, D and Pfeiffer, D},
    number = {1},
    pages = {6268},
    volume = {9},
    url = {https://doi.org/10.1038/s41598-019-42557-4},
    doi = {10.1038/s41598-019-42557-4},
    issn = {2045-2322}
}

@article{Mikolov2013,
    title = {{Efficient Estimation of Word Representations in Vector Space}},
    year = {2013},
    journal = {arXiv:1301.3781},
    author = {Mikolov, Tomas and Chen, Kai and Corrado, Greg and Dean, Jeffrey},
    month = {1},
    url = {http://arxiv.org/abs/1301.3781},
    arxivId = {1301.3781}
}

@article{yu_efficient_2004-1,
    title = {{Efficient feature selection via analysis of relevance and redundancy}},
    year = {2004},
    journal = {The Journal of Machine Learning Research},
    author = {Yu, Lei and Liu, Huan},
    pages = {1205--1224},
    volume = {5},
    url = {http://dl.acm.org/citation.cfm?id=1044700 http://machinelearning.wustl.edu/mlpapers/paper_files/YuL04.pdf}
}

@article{Zenati2018,
    title = {{Efficient GAN-Based Anomaly Detection}},
    year = {2018},
    journal = {arxiv},
    author = {Zenati, Houssam and Foo, Chuan Sheng and Lecouat, Bruno and Manek, Gaurav and Chandrasekhar, Vijay Ramaseshan},
    url = {http://arxiv.org/abs/1802.06222},
    arxivId = {1802.06222}
}

@article{Jones1998,
    title = {{Efficient global optimization of expensive black-box functions}},
    year = {1998},
    journal = {Journal of Global optimization},
    author = {Jones, Donald R. and Schonlau, Matthias and Welch, William J.},
    number = {4},
    pages = {455–492},
    volume = {13},
    url = {http://link.springer.com/article/10.1023/A:1008306431147 https://www.researchgate.net/profile/William_Welch/publication/225237917_Efficient_Global_Optimization_of_Expensive_Black-Box_Functions/links/0046352e6a473b8e59000000.pdf}
}

@article{Felzenszwalb2004,
    title = {{Efficient graph-based image segmentation}},
    year = {2004},
    journal = {International Journal of Computer Vision},
    author = {Felzenszwalb, Pedro F. and Huttenlocher, Daniel P.},
    number = {2},
    pages = {167–181},
    volume = {59},
    url = {http://link.springer.com/article/10.1023/B:VISI.0000022288.19776.77 http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.87.6267&rep=rep1&type=pdf}
}

@techreport{Rebuffi,
    title = {{Efficient parametrization of multi-domain deep neural networks}},
    author = {Rebuffi, Sylvestre-Alvise and Bilen, Hakan and Vedaldi, Andrea},
    url = {http://openaccess.thecvf.com/content_cvpr_2018/papers/Rebuffi_Efficient_Parametrization_of_CVPR_2018_paper.pdf}
}

@inproceedings{zheng_efficient_2009,
    title = {{Efficient record-level wrapper induction}},
    year = {2009},
    booktitle = {Conference on Information and knowledge Management},
    author = {Zheng, Shuyi and Song, Ruihua and Wen, Ji-Rong R and Giles, C. Lee},
    url = {http://portal.acm.org/citation.cfm?id=1645962 http://portal.acm.org/citation.cfm?doid=1645953.1645962},
    isbn = {9781605585123},
    doi = {10.1145/1645953.1645962}
}

@article{Tan2019a,
    title = {{EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks}},
    year = {2019},
    author = {Tan, Mingxing and Le, Quoc V.},
    month = {5},
    url = {http://arxiv.org/abs/1905.11946},
    arxivId = {1905.11946}
}

@article{Tan2019,
    title = {{EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks}},
    year = {2019},
    author = {Tan, Mingxing and Le, Quoc V.},
    month = {5},
    url = {http://arxiv.org/abs/1905.11946},
    arxivId = {1905.11946}
}

@article{Theocharides2004,
    title = {{Embedded hardware face detection}},
    year = {2004},
    author = {Theocharides, T. and Link, G. and Vijaykrishnan, N. and Irwin, M. J and Wolf, W.},
    url = {http://www.computer.org/portal/web/csdl/doi/10.1109/ICVD.2004.1260915}
}

@article{10.1148/radiol.2020200274,
    title = {{Emerging 2019 novel coronavirus (2019-NCoV) pneumonia}},
    year = {2020},
    journal = {Radiology},
    author = {Song, Fengxiang and Shi, Nannan and Shan, Fei and Zhang, Zhiyong and Shen, Jie and Lu, Hongzhou and Ling, Yun and Jiang, Yebin and Shi, Yuxin},
    number = {1},
    month = {2},
    pages = {210--217},
    volume = {295},
    publisher = {Radiological Society of North America Inc.},
    doi = {10.1148/radiol.2020200274},
    issn = {15271315},
    pmid = {32027573}
}

@inproceedings{Bermejo-Pelaez2018Emphysema,
    title = {{Emphysema classification using a multi-view convolutional network}},
    year = {2018},
    booktitle = {International Symposium on Biomedical Imaging},
    author = {Bermejo-Pel{\'{a}}ez, D and Estepar, R S J and Ledesma-Carbayo, M J},
    month = {4},
    doi = {10.1109/ISBI.2018.8363629},
    issn = {1945-8452}
}

@article{Soloway1984,
    title = {{Empirical studies of programming knowledge}},
    year = {1984},
    journal = {Software Engineering, IEEE Transactions on},
    author = {Soloway, E. and Ehrlich, K.},
    number = {5},
    pages = {595–609},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5010283&abstractAccess=no&userType=inst}
}

@article{Ren2016,
    title = {{End-to-End Instance Segmentation and Counting with Recurrent Attention}},
    year = {2016},
    author = {Ren, Mengye and Zemel, Richard S.},
    month = {5},
    url = {http://arxiv.org/abs/1605.09410},
    arxivId = {1605.09410}
}

@article{Signoroni2020Brixia,
    title = {{End-to-end learning for semiquantitative rating of COVID-19 severity on Chest X-rays}},
    year = {2020},
    journal = {arXiv:2006.04603},
    author = {Signoroni, Alberto and Savardi, Mattia and Benini, Sergio and Adami, Nicola and Leonardi, Riccardo and Gibellini, Paolo and Vaccher, Filippo and Ravanelli, Marco and Borghesi, Andrea and Maroldi, Roberto and Farina, Davide},
    month = {6},
    url = {http://arxiv.org/abs/2006.04603},
    arxivId = {2006.04603},
    keywords = {COVID-19 severity assessment, Chest X-Rays, Convolutional Neural Networks, End-to-end learning, semi-quantitative rating}
}

@article{Liang2017,
    title = {{Enhancing The Reliability of Out-of-distribution Image Detection in Neural Networks}},
    year = {2017},
    author = {Liang, Shiyu and Li, Yixuan and Srikant, R.},
    month = {6},
    url = {http://arxiv.org/abs/1706.02690},
    arxivId = {1706.02690}
}

@article{Chen2020,
    title = {{Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study}},
    year = {2020},
    journal = {The Lancet},
    author = {Chen, Nanshan and Zhou, Min and Dong, Xuan and Qu, Jieming and Gong, Fengyun and Han, Yang and Qiu, Yang and Wang, Jingli and Liu, Ying and Wei, Yuan and Xia, Jia'an and Yu, Ting and Zhang, Xinxin and Zhang, Li},
    number = {10223},
    month = {2},
    pages = {507--513},
    volume = {395},
    publisher = {Lancet Publishing Group},
    doi = {10.1016/S0140-6736(20)30211-7},
    issn = {1474547X},
    pmid = {32007143}
}

@inproceedings{Brady2017,
    title = {{Error and discrepancy in radiology: inevitable or avoidable?}},
    year = {2017},
    booktitle = {Insights into Imaging},
    author = {Brady, Adrian P.},
    doi = {10.1007/s13244-016-0534-1},
    issn = {18694101},
    keywords = {Error, Error sources, Misdiagnosis, Quality improvement, Radiology, diagnostic}
}

@article{Robert2015,
    title = {{Errors in RNA-Seq quantification affect genes of relevance to human disease}},
    year = {2015},
    journal = {Genome Biology},
    author = {Robert, Christelle and Watson, Mick},
    number = {1},
    month = {12},
    pages = {177},
    volume = {16},
    url = {http://genomebiology.com/2015/16/1/177},
    doi = {10.1186/s13059-015-0734-x},
    issn = {1474-760X}
}

@article{Shah2007,
    title = {{Errors in the computerized electrocardiogram interpretation of cardiac rhythm}},
    year = {2007},
    journal = {Journal of Electrocardiology},
    author = {Shah, Atman P. and Rubin, Stanley A.},
    number = {5},
    month = {9},
    pages = {385--390},
    volume = {40},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/17531257 https://linkinghub.elsevier.com/retrieve/pii/S0022073607000696},
    doi = {10.1016/j.jelectrocard.2007.03.008},
    issn = {00220736},
    pmid = {17531257}
}

@article{10.1148/radiol.2020200527,
    title = {{Essentials for Radiologists on COVID-19: An Update-Radiology Scientific Expert Panel}},
    year = {2020},
    journal = {Radiology},
    author = {Kanne, Jeffrey P. and Little, Brent P. and Chung, Jonathan H. and Elicker, Brett M. and Ketai, Loren H.},
    publisher = {NLM (Medline)},
    doi = {10.1148/radiol.2020200527},
    issn = {15271315},
    pmid = {32105562}
}

@inproceedings{John1995,
    title = {{Estimating Continuous Distributions in Bayesian Classifiers}},
    year = {1995},
    author = {John, George H. and Langley, Pat},
    pages = {338–345},
    series = {UAI'95},
    publisher = {Morgan Kaufmann Publishers Inc.},
    url = {http://dl.acm.org/citation.cfm?id=2074158.2074196 http://dl.acm.org/ft_gateway.cfm?id=2074196&type=pdf},
    address = {San Francisco, CA, USA},
    isbn = {978-1-55860-385-1}
}

@article{Scholkopf2001ScoreSVM,
    title = {{Estimating the Support of a High-Dimensional Distribution}},
    year = {2001},
    journal = {Neural Computation},
    author = {Sch{\"{o}}lkopf, Bernhard and Platt, John C. and Shawe-Taylor, John and Smola, Alex J. and Williamson, Robert C.},
    number = {7},
    month = {7},
    pages = {1443--1471},
    volume = {13},
    publisher = {MIT Press PUB1010 Cambridge, MA, USA},
    url = {https://www.mitpressjournals.org/doi/abs/10.1162/089976601750264965},
    doi = {10.1162/089976601750264965},
    issn = {0899-7667}
}

@misc{Botz2019,
    title = {{Evaluating chest x-rays using AI in your browser? — testing Chester}},
    year = {2019},
    author = {Botz, Bálint},
    url = {https://medium.com/@BalintBotz/evaluating-chest-x-rays-using-ai-in-your-browser-testing-chester-7bc099f80b29}
}

@article{Akbarian2020,
    title = {{Evaluating Knowledge Transfer in Neural Network for Medical Images}},
    year = {2020},
    author = {Akbarian, Sina and Seyyed-Kalantari, Laleh and Khalvati, Farzad and Dolatabadi, Elham},
    month = {8},
    url = {http://arxiv.org/abs/2008.13574},
    arxivId = {2008.13574},
    keywords = {Deep Neural Network, Index Terms-Knowledge Transfer, Medical Imaging, Teacher-Student Learning, Transfer Learning, and Convolution Neural Network}
}

@article{harrell1982evaluating,
    title = {{Evaluating the Yield of Medical Tests}},
    year = {1982},
    journal = {Journal of the American Medical Association},
    author = {Harrell, Frank E. and Califf, Robert M. and Pryor, David B. and Lee, Kerry L. and Rosati, Robert A.},
    isbn = {0098-7484 (Print){\textbackslash}r0098-7484 (Linking)},
    doi = {10.1001/jama.1982.03320430047030},
    issn = {15383598},
    pmid = {7069920}
}

@article{Morgan1998,
    title = {{Evaluation of artificial neural networks for fungal identification, employing morphometric data from spores of Pestalotiopsis species}},
    year = {1998},
    journal = {Mycological Research},
    author = {Morgan, Alexandra and Boddy, Lynne and Mordue, J. Elizabeth M. and Morris, Colin W.},
    number = {8},
    pages = {975--984},
    volume = {102},
    isbn = {0953-7562},
    doi = {10.1017/S0953756297005947},
    issn = {09537562}
}

@article{Hermosilla2011,
    title = {{Evaluation of automatic building detection approaches combining high resolution images and LiDAR data}},
    year = {2011},
    journal = {Remote Sensing},
    author = {Hermosilla, Txomin and Ruiz, Luis A. and Recio, Jorge A. and Estornell, Javier},
    number = {6},
    pages = {1188–1210},
    volume = {3},
    url = {http://www.mdpi.com/2072-4292/3/6/1188 http://www.mdpi.com/2072-4292/3/6/1188/pdf}
}

@article{Witharana2014,
    title = {{Evaluation of data fusion and image segmentation in earth observation based rapid mapping workflows}},
    year = {2014},
    journal = {ISPRS Journal of Photogrammetry and Remote Sensing},
    author = {Witharana, Chandi and Civco, Daniel L. and Meyer, Thomas H.},
    month = {1},
    pages = {1--18},
    volume = {87},
    url = {http://linkinghub.elsevier.com/retrieve/pii/S092427161300227X http://ac.els-cdn.com/S092427161300227X/1-s2.0-S092427161300227X-main.pdf?_tid=c4d0033c-5e1a-11e3-b162-00000aacb35f&acdnat=1386295661_773d4ab79cbd9a94cdcb94cc911f38eb},
    doi = {10.1016/j.isprsjprs.2013.10.005},
    issn = {09242716}
}

@techreport{Akata,
    title = {{Evaluation of Output Embeddings for Fine-Grained Image Classification}},
    author = {Akata, Zeynep and Reed, Scott and Walter, Daniel and Lee, Honglak and Schiele, Bernt}
}

@article{powersEvaluation2011,
    title = {{Evaluation: from precision, recall and F-measure to ROC, informedness, markedness and correlation}},
    year = {2011},
    journal = {Journal of Machine Learning Technologies},
    author = {Powers, David}
}

@article{Hartmann1999,
    title = {{Evidence for recent volcanism on Mars from crater counts}},
    year = {1999},
    journal = {Nature},
    author = {Hartmann, William K. and Malin, Michael and McEwen, Alfred and Carr, Michael and Soderblom, Larry and Thomas, Peter and Danielson, Ed and James, Phillip and Veverka, Joseph},
    number = {6720},
    month = {2},
    pages = {586--589},
    volume = {397},
    url = {http://www.nature.com/nature/journal/v397/n6720/abs/397586a0.html http://www.nature.com/nature/journal/v397/n6720/pdf/397586a0.pdf},
    doi = {10.1038/17545},
    issn = {0028-0836},
    language = {en}
}

@inproceedings{Brumby2003,
    title = {{Evolving automated feature extraction algorithms for planetary science}},
    year = {2003},
    author = {Brumby, S. and Plesko, C. and Asphaug, E.},
    url = {http://astropedia.astrogeology.usgs.gov/alfresco/d/d/workspace/SpacesStore/8a85eef6-ae7e-4473-b90b-a28230dca1f6/Brumby_isprs_mar03.pdf}
}

@article{Bengio,
    title = {{Evolving culture vs local minima}},
    year = {2012},
    journal = {arXiv preprint},
    author = {Bengio, Yoshua},
    url = {http://arxiv.org/abs/1203.2990%5Cnhttp://www.arxiv.org/pdf/1203.2990.pdf},
    isbn = {978-3-642-55336-3, 978-3-642-55337-0},
    doi = {10.1007/978-3-642-55337-0{\_}3},
    issn = {1860949X},
    arxivId = {arXiv:1203.2990v2}
}

@article{Shasha1994,
    title = {{Exact and approximate algorithms for unordered tree matching}},
    year = {1994},
    journal = {Systems, Man and Cybernetics, IEEE Transactions on},
    author = {Shasha, D. and Wang, J.T.L. and Zhang, K. and Shih, F.Y.},
    number = {4},
    pages = {668–678},
    volume = {24},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=286387&abstractAccess=no&userType=inst}
}

@article{shasha_exact_1994,
    title = {{Exact and approximate algorithms for unordered tree matching}},
    year = {1994},
    journal = {Systems, Man and Cybernetics, {\{}IEEE{\}} Transactions on},
    author = {Shasha, D and Wang, J T L and Zhang, K and Shih, F Y}
}

@article{Werther2011,
    title = {{Experiences in cyber security education: The mit lincoln laboratory capture-the-flag exercise}},
    shorttitle = {Experiences in cyber security education},
    year = {2011},
    journal = {Cyber Security Experimentation And Test},
    author = {Werther, J. and Zhivich, M. and Leek, T. and Zeldovich, N.},
    volume = {8},
    url = {https://www.usenix.org/events/cset11/tech/slides/werther.pdf}
}

@inproceedings{Freund1996,
    title = {{Experiments with a New Boosting Algorithm}},
    year = {1996},
    author = {Freund, Yoav and Schapire, Robert E.},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download;jsessionid=FBB35A94E618CFCF7D66ABDAA59E3FD9?doi=10.1.1.51.6252&rep=rep1&type=pdf http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.51.6252}
}

@techreport{Mullenbach,
    title = {{Explainable Prediction of Medical Codes from Clinical Text}},
    author = {Mullenbach, James and Wiegreffe, Sarah and Duke, Jon and Sun, Jimeng and Eisenstein, Jacob},
    url = {https://arxiv.org/pdf/1802.05695.pdf},
    arxivId = {1802.05695v2}
}

@misc{Singla2021BlackBoxSmoothly,
    title = {{Explaining the Black-box Smoothly- A Counterfactual Approach}},
    year = {2021},
    author = {Singla, Sumedha and Pollack, Brian and Wallace, Stephen and Batmanghelich, Kayhan},
    url = {https://arxiv.org/abs/2101.04230},
    arxivId = {2101.04230}
}

@inproceedings{Singla2020Exaggeration,
    title = {{Explanation by Progressive Exaggeration}},
    year = {2020},
    booktitle = {International Conference on Learning Representations},
    author = {Singla, Sumedha and Pollack, Brian and Chen, Junxiang and Batmanghelich, Kayhan},
    url = {http://arxiv.org/abs/1911.00483},
    arxivId = {1911.00483}
}

@inproceedings{denton2014exploiting,
    title = {{Exploiting linear structure within convolutional networks for efficient evaluation}},
    year = {2014},
    booktitle = {Advances in neural information processing systems},
    author = {Denton, Emily L and Zaremba, Wojciech and Bruna, Joan and LeCun, Yann and Fergus, Rob},
    pages = {1269--1277}
}

@article{Oakden-Rayner2019,
    title = {{Exploring Large-scale Public Medical Image Datasets}},
    year = {2020},
    journal = {Academic Radiology},
    author = {Oakden-Rayner, Luke},
    month = {7},
    url = {http://arxiv.org/abs/1907.12720},
    doi = {10.1016/j.acra.2019.10.006},
    issn = {18784046},
    arxivId = {1907.12720},
    keywords = {Artificial intelligence, dataset, deep learning, exploratory analysis, quality control}
}

@article{Minarro-Gimenez2014,
    title = {{Exploring the Application of Deep Learning Techniques on Medical Text Corpora}},
    year = {2014},
    journal = {Studies in Health Technology and Informatics},
    author = {Minarro-Gimenez, Jose Antonio and Marin-Alonso, Oscar and Samwald, Matthias},
    volume = {205},
    isbn = {9781614994312},
    doi = {10.3233/978-1-61499-432-9-584},
    issn = {18798365},
    pmid = {25160253},
    keywords = {Deep learning, biomedical literature, evaluation system}
}

@misc{Oakden-Rayner2017,
    title = {{Exploring the ChestXray14 dataset: problems}},
    year = {2017},
    author = {Oakden-Rayner, Luke},
    url = {https://lukeoakdenrayner.wordpress.com/2017/12/18/the-chestxray14-dataset-problems/}
}

@article{Jozefowicz2016,
    title = {{Exploring the Limits of Language Modelieng}},
    year = {2016},
    journal = {International Conference on Machine Learning (ICML)},
    author = {Jozefowicz, Rafal and Vinyals, Oriol and Schuster, Mike and Shazeer, Noam and Wu, Yonghui},
    month = {2},
    url = {http://arxiv.org/abs/1602.02410},
    arxivId = {1602.02410}
}

@article{Ahlqvist2008,
    title = {{Extending post-classification change detection using semantic similarity metrics to overcome class heterogeneity: A study of 1992 and 2001 US National Land Cover Database changes}},
    shorttitle = {Extending post-classification change detection usi},
    year = {2008},
    journal = {Remote Sensing of Environment},
    author = {Ahlqvist, Ola},
    number = {3},
    pages = {1226–1241},
    volume = {112},
    url = {http://www.sciencedirect.com/science/article/pii/S0034425707004026 http://www.colorado.edu/geography/leyk/geog_5113/readings/ahlqvist_2008_RSEnv.pdf}
}

@article{VanSuch2017,
    title = {{Extent of diagnostic agreement among medical referrals}},
    year = {2017},
    journal = {Journal of Evaluation in Clinical Practice},
    author = {Van Such, Monica and Lohr, Robert and Beckman, Thomas and Naessens, James M.},
    number = {4},
    month = {8},
    pages = {870--874},
    volume = {23},
    publisher = {Blackwell Publishing Ltd},
    doi = {10.1111/jep.12747},
    issn = {13652753},
    keywords = {diagnostic uncertainty, face-to-face visit, provider referrals}
}

@article{Setiono1997,
    title = {{Extracting rules from neural networks by pruning and hidden-unit splitting.}},
    year = {1997},
    journal = {Neural computation},
    author = {Setiono, Rudy},
    number = {1},
    month = {1},
    pages = {205--225},
    volume = {9},
    url = {http://dx.doi.org/10.1162/neco.1997.9.1.205 http://www.mitpressjournals.org/doi/abs/10.1162/neco.1997.9.1.205#.VGANvFtT7Kk http://www.mitpressjournals.org/doi/pdf/10.1162/neco.1997.9.1.205#.VGANvFtT7Kk},
    doi = {10.1162/neco.1997.9.1.205},
    issn = {0899-7667},
    pmid = {9117899}
}

@article{Zhai2005a,
    title = {{Extracting web data using instance-based learning}},
    year = {2005},
    journal = {Web Information Systems Engineering–WISE 2005},
    author = {Zhai, Y. and Liu, B.},
    pages = {318–331}
}

@article{zhai_extracting_2005,
    title = {{Extracting web data using instance-based learning}},
    year = {2005},
    journal = {Web Information Systems Engineering},
    author = {Zhai, Y and Liu, B},
    pages = {318–331}
}

@article{Sohn2001,
    title = {{Extraction of buildings from high resolution satellite data}},
    year = {2001},
    journal = {Automated Extraction of Man-Made Objects from Aerial and Space Images (III). Balkema Publishers, Lisse},
    author = {Sohn, G. and Dowman, I. J.},
    pages = {345–355},
    url = {http://books.google.com/books?hl=en&lr=&id=kjI4k58eOl4C&oi=fnd&pg=PA345&ots=QN2mypaZJL&sig=ffyKHlMDXBnleOOtHxjYNRpMZBc http://books.google.com/books?hl=en&lr=&id=kjI4k58eOl4C&oi=fnd&pg=PA345&ots=QN2mypaZJL&sig=ffyKHlMDXBnleOOtHxjYNRpMZBc#v=onepage&q&f=fal}
}

@article{Xiao2017Fashion-MNIST,
    title = {{Fashion-MNIST: a Novel Image Dataset for Benchmarking Machine Learning Algorithms}},
    year = {2017},
    journal = {arXiv},
    author = {Xiao, Han and Rasul, Kashif and Vollgraf, Roland},
    month = {8},
    publisher = {arXiv},
    url = {http://arxiv.org/abs/1708.07747},
    arxivId = {1708.07747}
}

@article{Madani2018a,
    title = {{Fast and accurate view classification of echocardiograms using deep learning}},
    year = {2018},
    journal = {npj Digital Medicine},
    author = {Madani, Ali and Arnaout, Ramy and Mofrad, Mohammad and Arnaout, Rima},
    number = {1},
    month = {12},
    volume = {1},
    publisher = {Springer Nature},
    doi = {10.1038/s41746-017-0013-1},
    issn = {2398-6352},
    arxivId = {1706.08658}
}

@techreport{Knopp2006,
    title = {{Fast computation of distance tables using highway hierarchies}},
    year = {2006},
    author = {Knopp, S. and Sanders, P. and Schultes, D. and Schulz, F. and Wagner, D.},
    institution = {Citeseer}
}

@inproceedings{Zhu2006,
    title = {{Fast human detection using a cascade of histograms of oriented gradients}},
    year = {2006},
    author = {Zhu, Q. and Yeh, M.C. and Cheng, K.T. and Avidan, S.},
    pages = {1491–1498},
    volume = {2},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1640933&abstractAccess=no&userType=inst}
}

@article{Kushnir2006,
    title = {{Fast multiscale clustering and manifold identification}},
    year = {2006},
    journal = {Pattern Recognition},
    author = {Kushnir, Dan and Galun, Meirav and Brandt, Achi},
    url = {http://www.wisdom.weizmann.ac.il/~meirav/sdarticle.pdf},
    isbn = {0031-3203},
    doi = {10.1016/j.patcog.2006.04.007},
    issn = {00313203},
    keywords = {Aggregation, Algebraic multigrid (AMG), Astrophysical models, Data analysis, Graph partitioning, Manifold, Similarity-based clustering}
}

@inproceedings{Girshick2015,
    title = {{Fast R-CNN}},
    year = {2016},
    booktitle = {Proceedings of the IEEE International Conference on Computer Vision},
    author = {Girshick, Ross},
    pages = {1440--1448},
    volume = {11-18-Dece},
    url = {http://www.cv-foundation.org/openaccess/content_iccv_2015/html/Girshick_Fast_R-CNN_ICCV_2015_paper.html http://arxiv.org/abs/1504.08083},
    isbn = {978-1-4673-8391-2},
    doi = {10.1109/ICCV.2015.169},
    issn = {978-1-4673-8391-2},
    pmid = {23739795},
    arxivId = {1504.08083}
}

@inproceedings{girshick2015fast,
    title = {{Fast r-cnn}},
    year = {2015},
    booktitle = {Proceedings of the IEEE international conference on computer vision},
    author = {Girshick, Ross},
    pages = {1440--1448}
}

@article{Ren2015,
    title = {{Faster R-CNN: Towards real-time object detection with region proposal networks}},
    year = {2015},
    journal = {Advances in neural information},
    author = {Ren, S and He, K and Girshick, R and Sun, J},
    url = {http://papers.nips.cc/paper/5638-faster-r-cnn-towards-real-time-object-detection-with-region-proposal-networks}
}

@article{Hoffman2016,
    title = {{FCNs in the Wild: Pixel-level Adversarial and Constraint-based Adaptation}},
    year = {2016},
    author = {Hoffman, Judy and Wang, Dequan and Yu, Fisher and Darrell, Trevor},
    url = {https://arxiv.org/pdf/1612.02649.pdf}
}

@article{Nestor2019,
    title = {{Feature Robustness in Non-stationary Health Records: Caveats to Deployable Model Performance in Common Clinical Machine Learning Tasks}},
    year = {2019},
    author = {Nestor, Bret and McDermott, Matthew B. A. and Boag, Willie and Berner, Gabriela and Naumann, Tristan and Hughes, Michael C. and Goldenberg, Anna and Ghassemi, Marzyeh},
    month = {8},
    url = {http://arxiv.org/abs/1908.00690},
    arxivId = {1908.00690}
}

@techreport{Nestor2019a,
    title = {{Feature Robustness in Non-stationary Health Records: Caveats to Deployable Model Performance in Common Clinical Machine Learning Tasks}},
    year = {2019},
    booktitle = {Machine Learning for Healthcare Conference},
    author = {Nestor, Bret and McDermott, Matthew B. A. and Boag, Willie and Berner, Gabriela and Naumann, Tristan and Hughes, Michael C. and Goldenberg, Anna and Ghassemi, Marzyeh},
    month = {10},
    url = {http://arxiv.org/abs/1908.00690},
    issn = {1938-7228},
    arxivId = {1908.00690}
}

@inproceedings{bensch_feature_2005,
    title = {{Feature selection for high-dimensional industrial data.}},
    year = {2005},
    booktitle = {ESANN},
    author = {Bensch, Michael and Schr{\"{o}}der, Michael and Bogdan, Martin and Rosenstiel, Wolfgang},
    pages = {375--380},
    url = {http://www.researchgate.net/profile/Martin_Bogdan/publication/221165950_Feature_selection_for_high-dimensional_industrial_data/links/02e7e528f64af3b212000000.pdf}
}

@article{Inza2000,
    title = {{Feature subset selection by Bayesian network-based optimization}},
    year = {2000},
    journal = {Artificial Intelligence},
    author = {Inza, I. and Larranaga, P. and Etxeberria, R. and Sierra, B.},
    number = {1-2},
    pages = {157--184},
    volume = {123}
}

@incollection{yang_feature_1998,
    title = {{Feature subset selection using a genetic algorithm}},
    year = {1998},
    booktitle = {Feature extraction, construction and selection},
    author = {Yang, Jihoon and Honavar, Vasant},
    pages = {117--136},
    publisher = {Springer},
    url = {http://scholar.google.com/scholar_url?url=http://link.springer.com/chapter/10.1007/978-1-4615-5725-8_8&hl=en&sa=T&ct=res&cd=0&ei=k1HdVPfyHOLC0QGq3YDICA&scisig=AAGBfm1RqGqHfHyJSE45zLEMGegjndJuBg&nossl=1&ws=1600x632 http://lib.dr.iastate.edu/cgi http://scho}
}

@article{Grass1986,
    title = {{Fela Anikulapo-Kuti: The Art of an Afrobeat Rebel}},
    shorttitle = {Fela Anikulapo-Kuti},
    year = {1986},
    journal = {The Drama Review: TDR},
    author = {Grass, Randall F.},
    number = {1},
    month = {4},
    pages = {131--148},
    volume = {30},
    url = {http://www.jstor.org/stable/1145717},
    doi = {10.2307/1145717},
    issn = {00125962}
}

@inproceedings{Motiian2017Few-ShotDA,
    title = {{Few-Shot Adversarial Domain Adaptation}},
    year = {2017},
    booktitle = {Neural Information Processing Systems},
    author = {Motiian, Saeid and Jones, Quinn and Iranmanesh, Mehdi and Doretto, Gianfranco}
}

@inproceedings{Garcia2017,
    title = {{Few-Shot Learning with Graph Neural Networks}},
    year = {2018},
    booktitle = {International Conference on Learning Representations},
    author = {Garcia, Victor and Bruna, Joan},
    url = {https://arxiv.org/pdf/1711.04043.pdf http://arxiv.org/abs/1711.04043},
    arxivId = {1711.04043}
}

@misc{Wikipedia2006,
    title = {{File:Pcm.svg - Wikipedia}},
    year = {2006},
    author = {{Wikipedia}},
    url = {http://en.wikipedia.org/wiki/File:Pcm.svg}
}

@inproceedings{Livshits2005,
    title = {{Finding security vulnerabilities in Java applications with static analysis}},
    year = {2005},
    author = {Livshits, V. B and Lam, M. S},
    pages = {18–18},
    url = {http://portal.acm.org/citation.cfm?id=1251416}
}

@inproceedings{Hsu1999,
    title = {{Finite-state transducers for semi-structured text mining}},
    year = {1999},
    author = {Hsu, C. N and Chang, C. C},
    pages = {38–49},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.12.1389&rep=rep1&type=pdf}
}

@inproceedings{hsu_finite-state_1999,
    title = {{Finite-state transducers for semi-structured text mining}},
    year = {1999},
    booktitle = {Proceedings of {\{}IJCAI{\}}-99 workshop on text mining: foundations, techniques and applications},
    author = {Hsu, C N and Chang, C C}
}

@article{romero2014fitnets,
    title = {{Fitnets: Hints for thin deep nets}},
    year = {2014},
    journal = {arXiv preprint arXiv:1412.6550},
    author = {Romero, Adriana and Ballas, Nicolas and Kahou, Samira Ebrahimi and Chassang, Antoine and Gatta, Carlo and Bengio, Yoshua}
}

@article{Salman,
    title = {{Flexible Tree Matching}},
    author = {Salman, R.K.J.O.T. and Klemmer, A.T.R.S.R.},
    url = {http://hci.stanford.edu/publications/2011/Bricolage/FTM-IJCAI2011.pdf}
}

@article{salman_flexible_,
    title = {{Flexible Tree Matching}},
    year = {2011},
    author = {Salman, R.K.J.O.T. and Klemmer, A.T.R.S.R.}
}

@article{Kumar2011,
    title = {{Flexible tree matching}},
    year = {2011},
    journal = {IJCAI International Joint Conference on Artificial Intelligence},
    author = {Kumar, Ranjitha and Talton, Jerry O. and Ahmad, Salman and Roughgarden, Tim and Klemmer, Scott R.},
    pages = {2674--2679},
    isbn = {9781577355120},
    doi = {10.5591/978-1-57735-516-8/IJCAI11-445},
    issn = {10450823}
}

@article{salman_flexible_2011,
    title = {{Flexible Tree Matching}},
    year = {2011},
    journal = {International Joint Conference on Artificial Intelligence},
    author = {Kumar, Ranjitha and Talton, Jerry O. and Ahmad, Salman and Roughgarden, Tim and Klemmer, Scott R. and Salman, R.K.J.O.T. and Klemmer, A.T.R.S.R.},
    isbn = {9781577355120},
    doi = {10.5591/978-1-57735-516-8/IJCAI11-445},
    issn = {10450823}
}

@article{Pringle1989,
    title = {{Fluorescence microscopy methods for yeast.}},
    year = {1989},
    journal = {Methods in cell biology},
    author = {Pringle, John R. and Preston, Robert A. and Adams, Alison E.M. and Stearns, Tim and Drubin, David G. and Haarer, Brian K. and Jones, Elizabeth W.},
    pages = {357--435},
    volume = {31},
    isbn = {0091-679X (Print){\textbackslash}r0091-679X (Linking)},
    doi = {10.1016/S0091-679X(08)61620-9},
    issn = {0091-679X},
    pmid = {2476649}
}

@article{Flockhart2006,
    title = {{FlyRNAi: the DrosophilaRNAi screening center database.}},
    year = {2006},
    journal = {Nucleic Acids Res},
    author = {Flockhart, I and Booker, M and Kiger, A and Boutros, M and Armknecht, S and Ramadan, N and Richardson, K and Xu, A and Perrimon, N and Mathey-Prevot, B},
    volume = {34},
    url = {http://dx.doi.org/10.1093/nar/gkj114},
    doi = {10.1093/nar/gkj114}
}

@article{Landwehr1981,
    title = {{Formal models for computer security}},
    year = {1981},
    journal = {ACM Computing Surveys (CSUR)},
    author = {Landwehr, C. E},
    number = {3},
    pages = {247–278},
    volume = {13},
    url = {http://portal.acm.org/citation.cfm?id=356852}
}

@article{Kern1999,
    title = {{Formal verification in hardware design: a survey}},
    shorttitle = {Formal verification in hardware design},
    year = {1999},
    journal = {ACM Transactions on Design Automation of Electronic Systems (TODAES)},
    author = {Kern, C. and Greenstreet, M. R.},
    number = {2},
    pages = {123–193},
    volume = {4},
    url = {http://dl.acm.org/citation.cfm?id=307989 http://murphylibrary.uwlax.edu/digital/journals/ACMTransactionsDesign/papers/1999/todaes99/pdffiles/v4_0123.pdf}
}

@article{Hu2017a,
    title = {{Freehand Ultrasound Image Simulation with Spatially- Conditioned Generative Adversarial Networks}},
    year = {2017},
    journal = {Miccai},
    author = {Hu, Yipeng and Gibson, Eli and Lee, Li-Lin and Xie, Weidi and Barratt, Dean C. and Vercauteren, Tom and Noble, J. Alison},
    url = {http://arxiv.org/abs/1707.05392%0Ahttp://dx.doi.org/10.1007/978-3-319-67564-0_11},
    isbn = {978-3-319-67564-0},
    doi = {10.1007/978-3-319-67564-0{\_}11},
    arxivId = {1707.05392}
}

@article{10.1148/radiol.2020201160,
    title = {{Frequency and Distribution of Chest Radiographic Findings in COVID-19 Positive Patients}},
    year = {2019},
    journal = {Radiology},
    author = {Wong, Ho Yuen Frank and Lam, Hiu Yin Sonia and Fong, Ambrose Ho Tung and Leung, Siu Ting and Chin, Thomas Wing Yan and Lo, Christine Shing Yen and Lui, Macy Mei Sze and Lee, Jonan Chun Yin and Chiu, Keith Wan Hang and Chung, Tom and Lee, Elaine Yuen Phin and Wan, Eric Yuk Fai and Hung, Fan Ngai Ivan and Lam, Tina Poy Wing and Kuo, Michael and Ng, Ming Yen},
    month = {3},
    publisher = {NLM (Medline)},
    doi = {10.1148/radiol.2020201160},
    issn = {15271315},
    pmid = {32216717}
}

@misc{Cohen2011a,
    title = {{Frequency Spectrum Dump}},
    year = {2011},
    author = {Cohen, Joseph Paul},
    url = {http://sourceforge.net/projects/frequencydump https://sourceforge.net/projects/frequencydump/}
}

@article{kanei2008frequent1,
    title = {{Frequent premature ventricular complexes originating from the right ventricular outflow tract are associated with left ventricular dysfunction}},
    year = {2008},
    journal = {Annals of Noninvasive Electrocardiology},
    author = {Kanei, Yumiko and Friedman, Meir and Ogawa, Naomi and Hanon, Sam and Lam, Patrick and Schweitzer, Paul}
}

@inproceedings{Call2019FRODO,
    title = {{FRODO: Free rejection of out-of-distribution samples: application to chest x-ray analysis}},
    year = {2019},
    booktitle = {Medical Imaging with Deep Learning},
    author = {{\c{C}}allı, Erdi and Murphy, Keelin and Sogancioglu, Ecem and van Ginneken, Bram},
    month = {7},
    url = {http://arxiv.org/abs/1907.01253},
    arxivId = {1907.01253}
}

@article{Baudo2007,
    title = {{From Himalaya to Karakoram: the spreading of the project Ev-K2-CNR}},
    shorttitle = {From Himalaya to Karakoram},
    year = {2007},
    journal = {Mountains witnesses of global changes: research in the Himalaya and Karakoram: SHARE-Asia project},
    author = {Baudo, R. and Schommer, B. and Belotti, C. and Vuillermoz, E.},
    pages = {33},
    issn = {0928-2025}
}

@article{Bottou2011,
    title = {{From Machine Learning to Machine Reasoning}},
    year = {2011},
    author = {Bottou, Leon},
    month = {2},
    url = {https://arxiv.org/abs/1102.1808},
    arxivId = {1102.1808}
}

@inproceedings{Hao2011,
    title = {{From one tree to a forest: a unified solution for structured web data extraction}},
    shorttitle = {From one tree to a forest},
    year = {2011},
    author = {Hao, Qiang and Cai, Rui and Pang, Yanwei and Zhang, Lei},
    pages = {775–784},
    publisher = {ACM},
    url = {http://dl.acm.org/citation.cfm?id=2010020 http://msr-waypoint.com/pubs/152207/StructedDataExtraction_SIGIR2011.pdf}
}

@inproceedings{hao_one_2011,
    title = {{From one tree to a forest: a unified solution for structured web data extraction}},
    year = {2011},
    booktitle = {International Conference on Research and Development in Information Retrieval},
    author = {Hao, Qiang and Cai, Rui and Pang, Yanwei and Zhang, Lei}
}

@incollection{Neuenschwander1995,
    title = {{From ziplock snakes to Velcro™ surfaces, Automatic extraction of man-made objects from aerial and space images}},
    year = {1995},
    author = {Neuenschwander, W. and Fua, P. and Sz{\'{e}}kely, G. and K{\"{u}}bler, O.},
    pages = {105--114},
    publisher = {Springer},
    url = {http://link.springer.com/chapter/10.1007/978-3-0348-9242-1_11}
}

@inproceedings{Long2015,
    title = {{Fully convolutional networks for semantic segmentation}},
    year = {2015},
    booktitle = {Conference on Computer Vision and Pattern Recognition},
    author = {Long, Jonathan and Shelhamer, Evan and Darrell, Trevor},
    isbn = {9781467369640},
    doi = {10.1109/CVPR.2015.7298965},
    issn = {10636919},
    pmid = {16190471},
    arxivId = {1411.4038}
}

@techreport{Saha,
    title = {{FULLY CONVOLUTIONAL NEURAL NETWORK FOR SEMANTIC SEGMENTATION OF ANATOMICAL STRUCTURE AND PATHOLOGIES IN COLOUR FUNDUS IMAGES ASSOCIATED WITH DIABETIC RETINOPATHY}},
    author = {Saha, Oindrila and Sathish, Rachana and Sheet, Debdoot},
    url = {http://cvit.iiit.ac.in/projects/mip/drishti-gs/mip-dataset2/Home.php},
    arxivId = {1902.03122v1},
    keywords = {Deep Convolu-tional Neural Networks, Index Terms-Diabetic Retinopathy, Lesions, Optic Disk, Semantic Pixel-Wise Segmentation}
}

@article{Lu2016,
    title = {{Fully-adaptive Feature Sharing in Multi-Task Networks with Applications in Person Attribute Classification}},
    year = {2016},
    author = {Lu, Yongxi and Kumar, Abhishek and Zhai, Shuangfei and Cheng, Yu and Javidi, Tara and Feris, Rogerio},
    month = {11},
    url = {http://arxiv.org/abs/1611.05377},
    arxivId = {1611.05377}
}

@article{Schmitt2014,
    title = {{FunCoup 3.0: database of genome-wide functional coupling networks.}},
    year = {2014},
    journal = {Nucleic acids research},
    author = {Schmitt, Thomas and Ogris, Christoph and Sonnhammer, Erik L L},
    number = {Database issue},
    month = {1},
    pages = {380--8},
    volume = {42},
    publisher = {Oxford University Press},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/24185702 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3965084},
    doi = {10.1093/nar/gkt984},
    issn = {1362-4962},
    pmid = {24185702}
}

@article{Ogris2018,
    title = {{FunCoup 4: new species, data, and visualization}},
    year = {2018},
    journal = {Nucleic Acids Research},
    author = {Ogris, Christoph and Guala, Dimitri and Kaduk, Mateusz and Sonnhammer, Erik L L},
    number = {D1},
    month = {1},
    pages = {D601-D607},
    volume = {46},
    publisher = {Oxford University Press},
    url = {http://academic.oup.com/nar/article/46/D1/D601/4641901},
    doi = {10.1093/nar/gkx1138},
    issn = {0305-1048},
    keywords = {bacillus subtilis, cattle, datasets, escherichia coli, genes, genome, gold standard, information sharing, mass spectrometry, operon, plasmodium falciparum, rice, signal transduction}
}

@article{Kim2005,
    title = {{Functional genomic analysis of RNA interference in C. elegans.}},
    year = {2005},
    journal = {Science},
    author = {Kim, J K and Gabel, H W and Kamath, R S and Tewari, M and Pasquinelli, A and Rual, J F and Kennedy, S and Dybbs, M and Bertin, N and Kaplan, J M},
    volume = {308},
    url = {http://dx.doi.org/10.1126/science.1109267},
    doi = {10.1126/science.1109267}
}

@article{Vanhecke2005,
    title = {{Functional genomics using high-throughput RNA interference.}},
    year = {2005},
    journal = {Drug Discov Today},
    author = {Vanhecke, D and Janitz, M},
    volume = {10},
    url = {http://dx.doi.org/10.1016/S1359-6446(04)03352-5},
    doi = {10.1016/S1359-6446(04)03352-5}
}

@article{Li1994,
    title = {{Functional relationships between airborne fungal spores and enviromental factors in Kitchener-Waterloo, Ontario, as detected by Canonical correspondence analysis}},
    year = {1994},
    journal = {Grana},
    author = {Li, De-Wei and Kendrick, Bryce},
    number = {3},
    pages = {166–176},
    volume = {33},
    publisher = { Taylor {\&} Francis Group },
    url = {http://www.tandfonline.com/doi/abs/10.1080/00173139409428995\nhttp://www.tandfonline.com/doi/pdf/10.1080/00173139409428995},
    isbn = {0017-3134},
    doi = {10.1080/00173139409428995},
    issn = {0017-3134}
}

@article{Gama2004,
    title = {{Functional trees}},
    year = {2004},
    journal = {Machine Learning},
    author = {Gama, Jo??o},
    number = {3},
    month = {6},
    pages = {219--250},
    volume = {55},
    url = {http://www.springerlink.com/content/v79034133wn65x48/},
    isbn = {0885-6125},
    doi = {10.1023/B:MACH.0000027782.67192.13},
    issn = {08856125},
    keywords = {Multiple models, Multivariate decision trees, Supervised learning}
}

@article{gama_functional_2004,
    title = {{Functional {\{}Trees{\}}}},
    year = {2004},
    journal = {Machine Learning},
    author = {Gama, João},
    number = {3},
    month = {6},
    pages = {219--250},
    volume = {55},
    url = {http://www.springerlink.com/content/v79034133wn65x48/},
    doi = {10.1023/B:MACH.0000027782.67192.13},
    issn = {0885-6125}
}

@article{Cai2011,
    title = {{Fungal DNA and pet allergen levels in Swedish day care centers and associations with building characteristics.}},
    year = {2011},
    journal = {Journal of environmental monitoring : JEM},
    author = {Cai, Gui-Hong and M{\"{a}}larstig, Björn and Kumlin, Anders and Johansson, Ingrid and Janson, Christer and Norb{\"{a}}ck, Dan},
    number = {7},
    pages = {2018--24},
    volume = {13},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/21637862},
    isbn = {14640325},
    doi = {10.1039/c0em00553c},
    issn = {1464-0333},
    pmid = {21637862},
    keywords = {Air Microbiology, Air Pollution, Indoor, Air Pollution, Indoor: analysis, Air Pollution, Indoor: statistics {\&} numerical data, Allergens, Allergens: analysis, Child, Child Day Care Centers, Child Day Care Centers: statistics {\&} numerical dat, Colony Count, Microbial, DNA, Fungal, DNA, Fungal: analysis, Environmental Monitoring, Facility Design and Construction, Female, Humans, Male, Pets, Sweden}
}

@article{HaleemKhan2012,
    title = {{Fungal pollution of indoor environments and its management.}},
    year = {2012},
    journal = {Saudi journal of biological sciences},
    author = {Haleem Khan, A A and Mohan Karuppayil, S},
    number = {4},
    month = {10},
    pages = {405--26},
    volume = {19},
    publisher = {Elsevier},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/23961203 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3730554},
    doi = {10.1016/j.sjbs.2012.06.002},
    issn = {1319-562X},
    pmid = {23961203},
    keywords = {Allergy, Aspergillus, Disinfectants, HEPA filters, Infections, Mycotoxins, Penicillium, Toxicity, Trichoderma}
}

@article{Sivasubramani2004,
    title = {{Fungal spore source strength tester: Laboratory evaluation of a new concept}},
    year = {2004},
    journal = {Science of the Total Environment},
    author = {Sivasubramani, Satheesh K. and Niemeier, Richard T. and Reponen, Tiina and Grinshpun, Sergey A.},
    number = {1-3},
    pages = {75--86},
    volume = {329},
    isbn = {1513558226},
    doi = {10.1016/j.scitotenv.2004.03.007},
    issn = {00489697},
    pmid = {15262159},
    keywords = {Bioaerosols, Building material, Fungi, Source strength, Spore release}
}

@article{Jaffee2017,
    title = {{Future cancer research priorities in the USA: a Lancet Oncology Commission}},
    year = {2017},
    journal = {The Lancet Oncology},
    author = {Jaffee, Elizabeth M and Dang, Chi Van and Agus, David B and Alexander, Brian M and Anderson, Kenneth C and Ashworth, Alan and Barker, Anna D and Bastani, Roshan and Bhatia, Sangeeta and Bluestone, Jeffrey A and Brawley, Otis and Butte, Atul J and Coit, Daniel G and Davidson, Nancy E and Davis, Mark and DePinho, Ronald A and Diasio, Robert B and Draetta, Giulio and Frazier, A Lindsay and Futreal, Andrew and Gambhir, Sam S and Ganz, Patricia A and Garraway, Levi and Gerson, Stanton and Gupta, Sumit and Heath, James and Hoffman, Ruth I and Hudis, Cliff and Hughes-Halbert, Chanita and Ibrahim, Ramy and Jadvar, Hossein and Kavanagh, Brian and Kittles, Rick and Le, Quynh-Thu and Lippman, Scott M and Mankoff, David and Mardis, Elaine R and Mayer, Deborah K and McMasters, Kelly and Meropol, Neal J and Mitchell, Beverly and Naredi, Peter and Ornish, Dean and Pawlik, Timothy M and Peppercorn, Jeffrey and Pomper, Martin G and Raghavan, Derek and Ritchie, Christine and Schwarz, Sally W and Sullivan, Richard and Wahl, Richard and Wolchok, Jedd D and Wong, Sandra L and Yung, Alfred},
    number = {11},
    pages = {e653-e706},
    volume = {18},
    url = {http://linkinghub.elsevier.com/retrieve/pii/S1470204517306988},
    doi = {10.1016/S1470-2045(17)30698-8},
    issn = {14702045}
}

@article{Mehrotra1992,
    title = {{Gabor filter-based edge detection}},
    year = {1992},
    journal = {Pattern Recognition},
    author = {Mehrotra, R. and Namuduri, K. R. and Ranganathan, N.},
    number = {12},
    month = {12},
    pages = {1479--1494},
    volume = {25},
    url = {http://www.sciencedirect.com/science/article/pii/003132039290121X},
    doi = {10.1016/0031-3203(92)90121-X},
    issn = {0031-3203}
}

@article{Shoshan2021GANControl,
    title = {{GAN-Control: Explicitly Controllable GANs}},
    year = {2021},
    author = {Shoshan, Alon and Bhonker, Nadav and Kviatkovsky, Igor and Medioni, Gerard},
    month = {1},
    url = {http://arxiv.org/abs/2101.02477},
    arxivId = {2101.02477}
}

@inproceedings{Brockschmidt2016,
    title = {{Gated Graph Sequence Neural Networks}},
    year = {2016},
    booktitle = {International Conference on Learning Representations},
    author = {Brockschmidt, Marc and Tarlow, Daniel},
    arxivId = {arXiv:1511.05493v4}
}

@inproceedings{Livshits2009,
    title = {{Gatekeeper: Mostly static enforcement of security and reliability policies for JavaScript code}},
    shorttitle = {Gatekeeper},
    year = {2009},
    author = {Livshits, B. and Guarnieri, S.},
    url = {http://pdos.csail.mit.edu/6.858/2011/readings/gatekeeper.pdf}
}

@article{Larrazabal2020,
    title = {{Gender imbalance in medical imaging datasets produces biased classifiers for computer-aided diagnosis}},
    year = {2020},
    journal = {Proceedings of the National Academy of Sciences},
    author = {Larrazabal, Agostina J. and Nieto, Nicolás and Peterson, Victoria and Milone, Diego H. and Ferrante, Enzo},
    month = {5},
    pages = {201919012},
    publisher = {National Academy of Sciences},
    url = {http://www.pnas.org/lookup/doi/10.1073/pnas.1919012117},
    doi = {10.1073/pnas.1919012117},
    issn = {0027-8424}
}

@article{Levsky2003,
    title = {{Gene expression and the myth of the average cell.}},
    year = {2003},
    journal = {Trends Cell Biol},
    author = {Levsky, J M and Singer, R H},
    volume = {13},
    url = {http://dx.doi.org/10.1016/S0962-8924(02)00002-8},
    doi = {10.1016/S0962-8924(02)00002-8}
}

@techreport{Kumar2019,
    title = {{Gene Expression based Survival Prediction for Cancer Patients-A Topic Modeling Approach}},
    year = {2019},
    author = {Kumar, Luke and Greiner, Russell},
    url = {https://arxiv.org/pdf/1903.10536.pdf},
    arxivId = {1903.10536v1}
}

@article{Chen2016,
    title = {{Gene expression inference with deep learning}},
    year = {2016},
    journal = {Bioinformatics},
    author = {Chen, Yifei and Li, Yi and Narayan, Rajiv and Subramanian, Aravind and Xie, Xiaohui},
    month = {6},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/26873929 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4908320 https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btw074},
    isbn = {13674811 (Electronic)},
    doi = {10.1093/bioinformatics/btw074},
    issn = {14602059},
    pmid = {26873929}
}

@article{Fidon2017,
    title = {{Generalised Wasserstein Dice Score for Imbalanced Multi-class Segmentation using Holistic Convolutional Networks}},
    year = {2017},
    author = {Fidon, Lucas and Li, Wenqi and Garcia-Peraza-Herrera, Luis C. and Ekanayake, Jinendra and Kitchen, Neil and Ourselin, Sebastien and Vercauteren, Tom},
    month = {7},
    url = {http://arxiv.org/abs/1707.00478},
    arxivId = {1707.00478}
}

@inproceedings{Salehinejad2017,
    title = {{Generalization of Deep Neural Networks for Chest Pathology Classification in X-Rays Using Generative Adversarial Networks}},
    year = {2017},
    booktitle = {International Conference on Acoustics, Speech and Signal Processing},
    author = {Salehinejad, Hojjat and Valaee, Shahrokh and Dowdell, Tim and Colak, Errol and Barfett, Joseph},
    url = {http://arxiv.org/abs/1712.01636},
    arxivId = {1712.01636}
}

@article{Yamaguchi,
    title = {{Generalized Vulnerability Extrapolation using Abstract Syntax Trees}},
    author = {Yamaguchi, F. and Lottmann, M. and Rieck, K.},
    url = {http://user.informatik.uni-goettingen.de/~krieck/docs/2012-acsac.pdf}
}

@article{Wang2019fewshot,
    title = {{Generalizing from a Few Examples: A Survey on Few-Shot Learning}},
    year = {2019},
    journal = {ACM Computing Surveys},
    author = {Wang, Yaqing and Yao, Quanming and Kwok, James and Ni, Lionel M.},
    month = {4},
    url = {http://arxiv.org/abs/1904.05046},
    arxivId = {1904.05046}
}

@inproceedings{VanSteenkiste2019,
    title = {{Generating an Explainable ECG Beat Space With Variational Auto-Encoders}},
    year = {2019},
    booktitle = {Machine Learning for Health (ML4H) at NeurIPS},
    author = {Van Steenkiste, Tom and Deschrijver, Dirk and Dhaene, Tom},
    month = {11},
    url = {http://arxiv.org/abs/1911.04898},
    arxivId = {1911.04898}
}

@article{Hsu1998,
    title = {{Generating finite-state transducers for semi-structured data extraction from the Web* 1}},
    year = {1998},
    journal = {Information systems},
    author = {Hsu, C. N and Dung, M. T},
    number = {8},
    pages = {521–538},
    volume = {23},
    url = {http://www.sciencedirect.com/science/article/pii/S0306437998000271}
}

@article{hsu_generating_1998,
    title = {{Generating finite-state transducers for semi-structured data extraction from the Web* 1}},
    year = {1998},
    journal = {Information systems},
    author = {Hsu, C N and Dung, M T}
}

@article{Segler2017,
    title = {{Generating Focussed Molecule Libraries for Drug Discovery with Recurrent Neural Networks}},
    year = {2017},
    author = {Segler, Marwin H. S. and Kogej, Thierry and Tyrchan, Christian and Waller, Mark P.},
    month = {1},
    url = {http://arxiv.org/abs/1701.01329},
    arxivId = {1701.01329}
}

@article{Mansimov2015,
    title = {{Generating Interpretable Images with Controllable Structure}},
    year = {2015},
    journal = {arXiv preprint},
    author = {Mansimov, Elman and Parisotto, Emilio and Ba, Jimmy Lei and Salakhutdinov, Ruslan},
    url = {http://arxiv.org/abs/1511.02793},
    arxivId = {1511.02793}
}

@phdthesis{Zhou2014,
    title = {{Generating virtual CT from MRI using fully convolutional neural networks with improved structure quality}},
    year = {2014},
    author = {Zhou, Yuan},
    school = {Delft University of Technology}
}

@inproceedings{Goodfellow2014GANs,
    title = {{Generative Adversarial Networks}},
    year = {2014},
    booktitle = {Neural Information Processing Systems},
    author = {Goodfellow, Ian J. and Pouget-Abadie, Jean and Mirza, Mehdi and Xu, Bing and Warde-Farley, David and Ozair, Sherjil and Courville, Aaron and Bengio, Yoshua},
    url = {http://arxiv.org/abs/1406.2661},
    arxivId = {1406.2661}
}

@article{Alex2017,
    title = {{Generative adversarial networks for brain lesion detection}},
    year = {2017},
    journal = {SPIE Medical Imaging},
    author = {Alex, Varghese and Safwan K. P., Mohammed and Chennamsetty, Sai Saketh and Krishnamurthi, Ganapathy},
    url = {http://proceedings.spiedigitallibrary.org/proceeding.aspx?doi=10.1117/12.2254487},
    doi = {10.1117/12.2254487},
    keywords = {Convolutional Neural Networks, Deep Learning, Generative Adversarial Networks, Generative models, Glioma segmentation, Lesion Detection, Magnetic Resonance Imaging, Novelty detector}
}

@article{Wolterink2017,
    title = {{Generative Adversarial Networks for Noise Reduction in Low-Dose CT}},
    year = {2017},
    journal = {IEEE Transactions on Medical Imaging},
    author = {Wolterink, Jelmer M. and Leiner, Tim and Viergever, Max A. and Isgum, Ivana},
    month = {12},
    url = {http://ieeexplore.ieee.org/document/7934380/},
    doi = {10.1109/TMI.2017.2708987},
    issn = {0278-0062}
}

@article{Ghahramani2018,
    title = {{Generative adversarial networks uncover epidermal regulators and predict single cell perturbations}},
    year = {2018},
    journal = {bioRxiv},
    author = {Ghahramani, Arsham and Watt, Fiona M and Luscombe, Nicholas M},
    month = {2},
    pages = {262501},
    publisher = {Cold Spring Harbor Laboratory},
    url = {https://www.biorxiv.org/content/early/2018/02/08/262501},
    doi = {10.1101/262501}
}

@article{He2017,
    title = {{Generative adversarial networks-based semi-supervised learning for hyperspectral image classification}},
    year = {2017},
    journal = {Remote Sensing},
    author = {He, Zhi and Liu, Han and Wang, Yiwen and Hu, Jie},
    doi = {10.3390/rs9101042},
    issn = {20724292},
    keywords = {Generative adversarial networks (GANs), Hyperspectral image (HSI), Semi-supervised classification, Three-dimensional bilateral filter (3DBF)}
}

@article{Liu2019GenCounterfac,
    title = {{Generative Counterfactual Introspection for Explainable Deep Learning}},
    year = {2019},
    author = {Liu, Shusen and Kailkhura, Bhavya and Loveland, Donald and Han, Yong},
    month = {7},
    url = {http://arxiv.org/abs/1907.03077},
    arxivId = {1907.03077}
}

@article{Li2015,
    title = {{Generative Moment Matching Networks}},
    year = {2015},
    journal = {International Conference on Machine Learning},
    author = {Li, Yujia and Swersky, Kevin and Zemel, Richard},
    url = {https://arxiv.org/pdf/1502.02761.pdf http://jmlr.org/proceedings/papers/v37/li15.html%5Cnhttps://github.com/yujiali/gmmn},
    isbn = {9781510810587},
    arxivId = {arXiv:1502.02761v1}
}

@misc{ref60,
    title = {{Genes {\{}{\&}{\}} Development. [http://www.genesdev.org/cgi/content/full/16/6/729/DC1]}},
    url = {http://www.genesdev.org/cgi/content/full/16/6/729/DC1}
}

@inproceedings{Vafaie1995,
    title = {{Genetic algorithms as a tool for restructuring feature space representations}},
    year = {1995},
    author = {Vafaie, H. and De Jong, K.},
    pages = {8–11}
}

@inproceedings{Cohen2011,
    title = {{Genetically Enhanced Feature Selection of Discriminative Planetary Crater Image Features}},
    year = {2011},
    author = {Cohen, Joseph Paul and Liu, Siyi and Ding, Wei},
    month = {12},
    address = {Perth, Western Australia}
}

@article{Papaemmanuil2016,
    title = {{Genomic Classification and Prognosis in Acute Myeloid Leukemia}},
    year = {2016},
    journal = {New England Journal of Medicine},
    author = {Papaemmanuil, Elli and Gerstung, Moritz and Bullinger, Lars and Gaidzik, Verena I. and Paschka, Peter and Roberts, Nicola D. and Potter, Nicola E. and Heuser, Michael and Thol, Felicitas and Bolli, Niccolo and Gundem, Gunes and Van Loo, Peter and Martincorena, Inigo and Ganly, Peter and Mudie, Laura and McLaren, Stuart and O’Meara, Sarah and Raine, Keiran and Jones, David R. and Teague, Jon W. and Butler, Adam P. and Greaves, Mel F. and Ganser, Arnold and D{\"{o}}hner, Konstanze and Schlenk, Richard F. and D{\"{o}}hner, Hartmut and Campbell, Peter J.},
    number = {23},
    month = {6},
    pages = {2209--2221},
    volume = {374},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/27276561 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4979995 http://www.nejm.org/doi/10.1056/NEJMoa1516192},
    doi = {10.1056/NEJMoa1516192},
    issn = {0028-4793},
    pmid = {27276561}
}

@article{Yang2013,
    title = {{Geographic image retrieval using local invariant features}},
    year = {2013},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Yang, Yi and Newsam, Shawn},
    number = {2},
    pages = {818–832},
    volume = {51},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6257473 http://ronicslabz.com/welcome/pdf/RL_ProjectCircuit_1405765811.pdf}
}

@article{Bonnefon2002,
    title = {{Geographic information system updating using remote sensing images}},
    year = {2002},
    journal = {Pattern Recognition Letters},
    author = {Bonnefon, R. and Dherete, Pierre and Desachy, Jacky},
    number = {9},
    pages = {1073--1083},
    volume = {23},
    url = {http://www.sciencedirect.com/science/article/pii/S0167865502000545 http://ac.els-cdn.com/S0167865502000545/1-s2.0-S0167865502000545-main.pdf?_tid=32e312ec-2b71-11e3-ae66-00000aacb362&acdnat=1380725274_9a5509738baf40dc9d32120c72828ed6}
}

@inproceedings{Lamb2017,
    title = {{GibbsNet: Iterative Adversarial Inference for Deep Graphical Models}},
    year = {2017},
    booktitle = {Neural Information Processing Systems},
    author = {Lamb, Alex and Hjelm, Devon and Ganin, Yaroslav and Cohen, Joseph Paul and Courville, Aaron and Bengio, Yoshua},
    url = {http://arxiv.org/abs/1712.04120},
    arxivId = {1712.04120}
}

@misc{Cohen2021gifs,
    title = {{Gifsplanation via Latent Shift: A Simple Autoencoder Approach to Progressive Exaggeration on Chest X-rays}},
    year = {2021},
    author = {Cohen, Joseph Paul and Brooks, Rupert and En, Sovann and Zucker, Evan and Pareek, Anuj and Lungren, Matthew P. and Chaudhari, Akshay},
    month = {2},
    url = {https://openreview.net/forum?id=rnunjvgxAMt}
}

@misc{OGCa,
    title = {{GML}},
    author = {{OGC}},
    url = {http://www.opengeospatial.org/standards/gml}
}

@inproceedings{szegedy2015going,
    title = {{Going deeper with convolutions}},
    year = {2015},
    booktitle = {Proceedings of the IEEE conference on computer vision and pattern recognition},
    author = {Szegedy, Christian and Liu, Wei and Jia, Yangqing and Sermanet, Pierre and Reed, Scott and Anguelov, Dragomir and Erhan, Dumitru and Vanhoucke, Vincent and Rabinovich, Andrew},
    pages = {1--9}
}

@misc{Google,
    title = {{Google Earth API - Google Code}},
    author = {{Google}},
    url = {http://code.google.com/apis/earth/}
}

@misc{Googlea,
    title = {{Google Maps API Family}},
    author = {{Google}},
    url = {http://code.google.com/apis/maps/}
}

@techreport{Chattopadhyay,
    title = {{Grad-CAM++: Improved Visual Explanations for Deep Convolutional Networks}},
    year = {2017},
    author = {Chattopadhyay, Aditya and Sarkar, Anirban and Howlader, Prantik and Balasubramanian, Vineeth N},
    url = {https://arxiv.org/abs/1710.11063},
    arxivId = {1710.11063v3},
    keywords = {Computer Vision !, Convolutional Neural Networks, Index Terms-Explainable AI, Interpretable ML}
}

@article{Selvaraju2017,
    title = {{Grad-CAM: Visual Explanations from Deep Networks via Gradient-based Localization}},
    year = {2017},
    journal = {Computer Vision and Pattern Recognition},
    author = {Selvaraju, Ramprasaath R. and Cogswell, Michael and Das, Abhishek and Vedantam, Ramakrishna and Parikh, Devi and Batra, Dhruv},
    month = {10},
    url = {http://arxiv.org/abs/1610.02391},
    arxivId = {1610.02391}
}

@techreport{Hochreiter,
    title = {{Gradient Flow in Recurrent Nets: the Difficulty of Learning Long-Term Dependencies}},
    author = {Hochreiter, Sepp and Bengio, Yoshua and Frasconi, Paolo and Schmidhuber, Jürgen},
    url = {https://www.bioinf.jku.at/publications/older/ch7.pdf}
}

@article{lecun_gradient-based_1998,
    title = {{Gradient-based learning applied to document recognition}},
    year = {1998},
    journal = {Proceedings of the IEEE},
    author = {Lecun, Yann and Bottou, Léon and Bengio, Yoshua and Haffner, Patrick},
    number = {11},
    month = {11},
    pages = {2278--2324},
    volume = {86},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=726791 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=726791&tag=1 http://yann.lecun.com/exdb/publis/pdf/lecun-01a.pdf http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=726791&abstractAccess},
    doi = {10.1109/5.726791},
    issn = {0018-9219},
    keywords = {2D shape variability, Character recognition, Feature extraction, GTN, Hidden Markov models, Machine learning, Multi-layer neural network, Neural networks, Optical character recognition software, Optical computing, Pattern recognition, Principal component analysis, back-propagation, backpropagation, cheque reading, complex decision surface synthesis, convolution, convolutional neural network character recognizer, document recognition, document recognition systems, field extraction, gradient based learning technique, gradient-based learning, graph transformer networks, handwritten character recognition, handwritten digit recognition task, high-dimensional patterns, language modeling, multilayer neural networks, multilayer perceptrons, multimodule systems, optical character recognition, performance measure minimization, segmentation recognition}
}

@article{Sundararajan2016Counterfactuals,
    title = {{Gradients of Counterfactuals}},
    year = {2016},
    author = {Sundararajan, Mukund and Taly, Ankur and Yan, Qiqi},
    month = {11},
    url = {http://arxiv.org/abs/1611.02639},
    arxivId = {1611.02639}
}

@inproceedings{Simpson2019,
    title = {{GradMask: Reduce Overfitting by Regularizing Saliency}},
    year = {2019},
    booktitle = {Medical Imaging with Deep Learning Workshop},
    author = {Simpson, Becks and Dutil, Francis and Bengio, Yoshua and Cohen, Joseph Paul},
    month = {4},
    url = {http://arxiv.org/abs/1904.07478},
    arxivId = {1904.07478}
}

@inproceedings{Chen2018,
    title = {{GradNorm: Gradient Normalization for Adaptive Loss Balancing in Deep Multitask Networks}},
    year = {2018},
    booktitle = {International Conference on Machine Learning},
    author = {Chen, Zhao and Badrinarayanan, Vijay and Lee, Chen-Yu and Rabinovich, Andrew},
    url = {https://arxiv.org/pdf/1711.02257.pdf},
    arxivId = {1711.02257v4}
}

@inproceedings{Chen2017,
    title = {{Graph Convolutional Networks for Classification with a Structured Label Space}},
    year = {2017},
    booktitle = {Association for the Advancement of Artificial Intelligence},
    author = {Chen, Meihao and Lin, Zhuoru and Cho, Kyunghyun},
    month = {10},
    url = {http://arxiv.org/abs/1710.04908},
    arxivId = {1710.04908}
}

@article{Boykov2006,
    title = {{Graph cuts and efficient ND image segmentation}},
    year = {2006},
    journal = {International Journal of Computer Vision},
    author = {Boykov, Yuri and Funka-Lea, Gareth},
    number = {2},
    pages = {109–131},
    volume = {70},
    url = {http://link.springer.com/article/10.1007/s11263-006-7934-5 http://lvelho.impa.br/ip12/reading/ijcv06.pdf}
}

@book{Glassner1993,
    title = {{Graphics gems}},
    year = {1993},
    author = {Glassner, A. S},
    volume = {1},
    publisher = {Morgan Kaufmann},
    url = {http://books.google.com/books?hl=en&lr=&id=fvA7zLEFWZgC&oi=fnd&pg=PR16&dq=graphics+gems&ots=7M6Fw8pCYi&sig=8vgYoGZVRIeDdikxrkKPxM-GfeQ}
}

@book{Arvo1994,
    title = {{Graphics gems II}},
    year = {1994},
    author = {Arvo, J.},
    volume = {2},
    publisher = {Morgan Kaufmann},
    url = {http://books.google.com/books?hl=en&lr=&id=ZQQssYF3i7wC&oi=fnd&pg=PR2&dq=graphics+gems+II&ots=3uDsrWmXUT&sig=B06i2CK6aDGHb7cH2cvtQLFdam0}
}

@article{Kirk1995,
    title = {{Graphics gems III}},
    year = {1995},
    author = {Kirk, D.},
    url = {http://library.auditory.ru/1470/}
}

@book{Heckbert1994,
    title = {{Graphics gems IV}},
    year = {1994},
    author = {Heckbert, P. S},
    volume = {4},
    publisher = {Morgan Kaufmann},
    url = {http://books.google.com/books?hl=en&lr=&id=CCqzMm_-WucC&oi=fnd&pg=PR11&dq=graphics+gems&ots=msgt68MEef&sig=l8D_nosI1ZLd-phmlZQpNjuTfrA}
}

@article{Kim2014,
    title = {{Greedy Algorithms for Nonnegativity-Constrained Simultaneous Sparse Recovery}},
    year = {2014},
    journal = {Signal processing},
    author = {Kim, Daeun and Haldar, Justin P},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/26973368 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4784713},
    isbn = {1025584090},
    doi = {10.1038/ncomms5234.SUMO1},
    issn = {1527-5418},
    pmid = {28299348},
    arxivId = {15334406},
    keywords = {compressed sensing, greedy algorithms, nonnegativity, simultaneous sparsity}
}

@inproceedings{Caruana1994,
    title = {{Greedy attribute selection}},
    year = {1994},
    author = {Caruana, R. and Freitag, D.},
    pages = {28–36}
}

@book{Forsyth2009,
    title = {{Group Dynamics}},
    year = {2009},
    author = {Forsyth, Donelson R.},
    edition = {005},
    month = {3},
    publisher = {Wadsworth Publishing},
    url = {http://www.amazon.com/dp/0495599522},
    isbn = {9780495599524}
}

@inproceedings{Cherkauer1996,
    title = {{Growing simpler decision trees to facilitate knowledge discovery}},
    year = {1996},
    author = {Cherkauer, K. J and Shavlik, J. W},
    pages = {315--318}
}

@article{Smith2009,
    title = {{H2O at the Phoenix landing site}},
    year = {2009},
    journal = {Science},
    author = {Smith, P. H. and Tamppari, L. K. and Arvidson, R. E. and Bass, D. and Blaney, D. and Boynton, W. V. and Carswell, A. and Catling, D. C. and Clark, B. C. and Duck, T.},
    number = {5936},
    pages = {58–61},
    volume = {325},
    url = {http://www.sciencemag.org/content/325/5936/58.short}
}

@article{Hanahan2011,
    title = {{Hallmarks of Cancer: The Next Generation}},
    year = {2011},
    journal = {Cell},
    author = {Hanahan, Douglas and Weinberg, Robert A},
    pages = {646--674},
    volume = {144},
    doi = {10.1016/j.cell.2011.02.013}
}

@book{Li2011,
    title = {{Handbook of face recognition}},
    year = {2011},
    author = {Li, Stan Z. and Jain, Anil K.},
    publisher = {springer},
    url = {http://books.google.com/books?hl=en&lr=&id=KSXwPmoqGWYC&oi=fnd&pg=PR3&dq=%22catalogue+record+for+this+book+is+available+from+the+British%22+%22under+the+Copyright,+Designs+and+Patents+Act+1988,+this+publication+may+only+be%22+%22Springer-Verlag+London+Lim}
}

@article{Orach2009,
    title = {{Health equity: challenges in low income countries.}},
    year = {2009},
    journal = {African health sciences},
    author = {Orach, Christopher Garimoi},
    number = {Suppl 2},
    month = {10},
    pages = {49--51},
    volume = {9 Suppl 2},
    publisher = {Makerere University Medical School},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/20589106 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC2877288},
    issn = {1729-0503},
    pmid = {20589106}
}

@article{Israel2012,
    title = {{Heartbeat biometrics: a sensing system perspective}},
    year = {2012},
    journal = {International Journal of Cognitive Biometrics},
    author = {Israel, Steven A. and Irvine, John M.},
    number = {1},
    pages = {39},
    volume = {1},
    url = {http://www.inderscience.com/link.php?id=46514},
    doi = {10.1504/ijcb.2012.046514},
    issn = {2042-6461}
}

@inproceedings{Havaei2016,
    title = {{HeMIS: Hetero-modal image segmentation}},
    year = {2016},
    booktitle = {Medical Image Computing and Computer Assisted Intervention},
    author = {Havaei, Mohammad and Guizard, Nicolas and Chapados, Nicolas and Bengio, Yoshua},
    volume = {9901 LNCS},
    url = {http://arxiv.org/abs/1607.05194},
    isbn = {9783319467221},
    doi = {10.1007/978-3-319-46723-8{\_}54},
    issn = {16113349},
    arxivId = {1607.05194},
    keywords = {Convolutional neural networks, Data abstraction, Data imputation, Deep learning, Multi-modal, Segmentation}
}

@article{Himmelstein2015,
    title = {{Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes}},
    year = {2015},
    journal = {PLOS Computational Biology},
    author = {Himmelstein, Daniel S. and Baranzini, Sergio E.},
    editor = {Tang, Hua},
    number = {7},
    month = {7},
    pages = {e1004259},
    volume = {11},
    publisher = {Public Library of Science},
    url = {https://dx.plos.org/10.1371/journal.pcbi.1004259},
    doi = {10.1371/journal.pcbi.1004259},
    issn = {1553-7358}
}

@article{Gentles2016,
    title = {{HHS Public Access}},
    year = {2016},
    author = {Gentles, Andrew J and Newman, Aaron M and Liu, Chih Long and Bratman, Scott V and Diehn, Maximilian and West, Robert B and Plevritis, Sylvia K and Ash, A},
    number = {8},
    pages = {938--945},
    volume = {21},
    doi = {10.1038/nm.3909.The}
}

@inproceedings{Cerri2014,
    title = {{Hierarchical multi-label classification using local neural networks}},
    year = {2014},
    booktitle = {Journal of Computer and System Sciences},
    author = {Cerri, Ricardo and Barros, Rodrigo C. and De Carvalho, André C.P.L.F.},
    number = {1},
    month = {2},
    pages = {39--56},
    volume = {80},
    publisher = {Academic Press},
    doi = {10.1016/j.jcss.2013.03.007},
    issn = {00220000},
    keywords = {Hierarchical multi-label classification, Local classification method, Neural networks}
}

@article{Sharon2006,
    title = {{Hierarchy and adaptivity in segmenting visual scenes}},
    year = {2006},
    journal = {Nature},
    author = {Sharon, Eitan and Galun, Meirav and Sharon, Dahlia and Basri, Ronen and Brandt, Achi},
    number = {7104},
    pages = {810–813},
    volume = {442},
    url = {http://www.nature.com/nature/journal/vaop/ncurrent/full/nature04977.html http://www.nature.com/nature/journal/v442/n7104/full/nature04977.html}
}

@article{Abraham2004,
    title = {{High content screening applied to large-scale cell biology.}},
    year = {2004},
    journal = {Trends Biotechnol},
    author = {Abraham, V C and Taylor, D L and Haskins, J R},
    volume = {22},
    url = {http://dx.doi.org/10.1016/j.tibtech.2003.10.012},
    doi = {10.1016/j.tibtech.2003.10.012}
}

@article{Perlman2005,
    title = {{High-content screening and profiling of drug activity in an automated centrosome-duplication assay.}},
    year = {2005},
    journal = {Chembiochem},
    author = {Perlman, Z E and Mitchison, T J and Mayer, T U},
    volume = {6},
    url = {http://dx.doi.org/10.1002/cbic.200400266},
    doi = {10.1002/cbic.200400266}
}

@article{Ohya2005,
    title = {{High-dimensional and large-scale phenotyping of yeast mutants.}},
    year = {2005},
    journal = {Proc Natl Acad Sci USA},
    author = {Ohya, Y and Sese, J and Yukawa, M and Sano, F and Nakatani, Y and Saito, T L and Saka, A and Fukuda, T and Ishihara, S and Oka, S},
    volume = {102},
    url = {http://dx.doi.org/10.1073/pnas.0509436102},
    doi = {10.1073/pnas.0509436102}
}

@article{Geras2017,
    title = {{High-Resolution Breast Cancer Screening with Multi-View Deep Convolutional Neural Networks}},
    year = {2017},
    author = {Geras, Krzysztof J. and Wolfson, Stacey and Shen, Yiqiu and Wu, Nan and Kim, S. Gene and Kim, Eric and Heacock, Laura and Parikh, Ujas and Moy, Linda and Cho, Kyunghyun},
    month = {3},
    url = {http://arxiv.org/abs/1703.07047},
    arxivId = {1703.07047}
}

@article{Chan2004,
    title = {{High-Resolution CT Findings in Patients with Severe Acute Respiratory Syndrome: A Pattern-Based Approach}},
    year = {2004},
    journal = {American Journal of Roentgenology},
    author = {Chan, Monica S. M. and Chan, Ivan Y. F. and Fung, K. H. and Poon, Edwin and Yam, Loretta Y. C. and Lau, K. Y.},
    number = {1},
    month = {1},
    pages = {49--56},
    volume = {182},
    publisher = {American Roentgen Ray Society},
    url = {http://www.ajronline.org/doi/10.2214/ajr.182.1.1820049},
    doi = {10.2214/ajr.182.1.1820049},
    issn = {0361-803X}
}

@article{Rajkomar2017High-Throughput,
    title = {{High-Throughput Classification of Radiographs Using Deep Convolutional Neural Networks}},
    year = {2017},
    journal = {Journal of Digital Imaging},
    author = {Rajkomar, Alvin and Lingam, Sneha and Taylor, Andrew G and Blum, Michael and Mongan, John},
    month = {2},
    publisher = {Springer},
    doi = {10.1007/s10278-016-9914-9},
    issn = {0897-1889, 1618-727X},
    pmid = {27730417}
}

@article{Armknecht2005,
    title = {{High-throughput RNA interference screens in Drosophilatissue culture cells.}},
    year = {2005},
    journal = {Methods Enzymol},
    author = {Armknecht, S and Boutros, M and Kiger, A and Nybakken, K and Mathey-Prevot, B and Perrimon, N},
    volume = {392},
    url = {http://dx.doi.org/10.1016/S0076-6879(04)92004-6},
    doi = {10.1016/S0076-6879(04)92004-6}
}

@article{Echeverri2006,
    title = {{High-throughput RNAi screening in cultured cells: a user's guide.}},
    year = {2006},
    journal = {Nat Rev Genet},
    author = {Echeverri, C J and Perrimon, N},
    volume = {7},
    url = {http://dx.doi.org/10.1038/nrg1836},
    doi = {10.1038/nrg1836}
}

@inproceedings{Blanco2011,
    title = {{Highly efficient algorithms for structural clustering of large websites}},
    year = {2011},
    author = {Blanco, L. and Dalvi, N. and Machanavajjhala, A.},
    pages = {437–446},
    url = {http://portal.acm.org/citation.cfm?id=1963468}
}

@inproceedings{blanco_highly_2011,
    title = {{Highly efficient algorithms for structural clustering of large websites}},
    year = {2011},
    booktitle = {Proceedings of the 20th international conference on World wide web},
    author = {Blanco, L and Dalvi, N and Machanavajjhala, A}
}

@inproceedings{Dalal2005,
    title = {{Histograms of oriented gradients for human detection}},
    year = {2005},
    author = {Dalal, Navneet and Triggs, Bill},
    pages = {886–893},
    volume = {1},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1467360 http://hal.archives-ouvertes.fr/docs/00/54/85/12/PDF/hog_cvpr2005.pdf http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1467360&abstractAccess=no&userType=inst http://www.computer.org/port}
}

@inproceedings{Guo2017,
    title = {{HopLand: Single-cell pseudotime recovery using continuous Hopfield network-based modeling of Waddington's epigenetic landscape}},
    year = {2017},
    booktitle = {Bioinformatics},
    author = {Guo, Jing and Zheng, Jie},
    number = {14},
    month = {7},
    pages = {i102-i109},
    volume = {33},
    publisher = {Oxford University Press},
    doi = {10.1093/bioinformatics/btx232},
    issn = {14602059}
}

@article{Shi2020hostriskscore,
    title = {{Host susceptibility to severe COVID-19 and establishment of a host risk score: Findings of 487 cases outside Wuhan}},
    year = {2020},
    journal = {Critical Care},
    author = {Shi, Yu and Yu, Xia and Zhao, Hong and Wang, Hao and Zhao, Ruihong and Sheng, Jifang},
    number = {1},
    month = {12},
    pages = {108},
    volume = {24},
    publisher = {BioMed Central Ltd.},
    url = {https://ccforum.biomedcentral.com/articles/10.1186/s13054-020-2833-7},
    doi = {10.1186/s13054-020-2833-7},
    issn = {1466609X},
    pmid = {32188484},
    keywords = {COVID-2019, Disease severity, Host susceptibility, Risk factors}
}

@article{Dick,
    title = {{How many random restarts are enough?}},
    author = {Dick, Travis and Wong, Eric and Dann, Christoph},
    url = {http://www.cs.cmu.edu/~epxing/Class/10715/project-reports/DannDickWong.pdf}
}

@article{Chuquicusma2017,
    title = {{How to Fool Radiologists with Generative Adversarial Networks? A Visual Turing Test for Lung Cancer Diagnosis}},
    year = {2017},
    journal = {IEEE International Symposium on Biomedical Imaging},
    author = {Chuquicusma, Maria J. M. and Hussein, Sarfaraz and Burt, Jeremy and Bagci, Ulas},
    month = {10},
    url = {http://arxiv.org/abs/1710.09762},
    arxivId = {1710.09762}
}

@misc{Liu2019a,
    title = {{How to Read Articles That Use Machine Learning: Users' Guides to the Medical Literature}},
    year = {2019},
    booktitle = {JAMA - Journal of the American Medical Association},
    author = {Liu, Yun and Chen, Po Hsuan Cameron and Krause, Jonathan and Peng, Lily},
    number = {18},
    month = {11},
    pages = {1806--1816},
    volume = {322},
    publisher = {American Medical Association},
    doi = {10.1001/jama.2019.16489},
    issn = {15383598},
    pmid = {31714992}
}

@misc{Liu2019b,
    title = {{How to Read Articles That Use Machine Learning: Users' Guides to the Medical Literature}},
    year = {2019},
    booktitle = {JAMA - Journal of the American Medical Association},
    author = {Liu, Yun and Chen, Po Hsuan Cameron and Krause, Jonathan and Peng, Lily},
    number = {18},
    month = {11},
    pages = {1806--1816},
    volume = {322},
    publisher = {American Medical Association},
    doi = {10.1001/jama.2019.16489},
    issn = {15383598},
    pmid = {31714992},
    keywords = {machine learning}
}

@article{Kodali2017,
    title = {{How to Train Your DRAGAN}},
    year = {2017},
    author = {Kodali, Naveen and Abernethy, Jacob and Hays, James and Kira, Zsolt},
    month = {5},
    url = {http://arxiv.org/abs/1705.07215},
    arxivId = {1705.07215}
}

@article{Mikolajczyk2004,
    title = {{Human detection based on a probabilistic assembly of robust part detectors}},
    year = {2004},
    journal = {Computer Vision-ECCV 2004},
    author = {Mikolajczyk, K. and Schmid, C. and Zisserman, A.},
    pages = {69–82}
}

@misc{Parameswaran2011a,
    title = {{Human-assisted Graph Search: It's Okay to Ask Questions}},
    shorttitle = {Human-assisted Graph Search},
    year = {2011},
    author = {Parameswaran, Aditya and Das Sarma, Anish and Garcia-Molina, Hector and Polyzotis, Neoklis and Widom, Jennifer},
    month = {2},
    url = {http://ilpubs.stanford.edu:8090/970/}
}

@misc{parameswaran_human-assisted_2011,
    title = {{Human-assisted Graph Search: It's Okay to Ask Questions}},
    shorttitle = {Human-assisted Graph Search},
    year = {2011},
    author = {Parameswaran, Aditya and Das Sarma, Anish and Garcia-Molina, Hector and Polyzotis, Neoklis and Widom, Jennifer},
    month = {2},
    url = {http://ilpubs.stanford.edu:8090/970/}
}

@article{Archer1997,
    title = {{Human-style theorem proving using PVS}},
    year = {1997},
    journal = {Theorem Proving in Higher Order Logics},
    author = {Archer, M. and Heitmeyer, C.},
    pages = {33–48},
    url = {http://www.dtic.mil/cgi-bin/GetTRDoc?AD=ADA464276 http://www.springerlink.com/content/d552gq6228822833/}
}

@article{Tschandl2020SkinCancer,
    title = {{Human–computer collaboration for skin cancer recognition}},
    year = {2020},
    journal = {Nature Medicine},
    author = {Tschandl, Philipp and Rinner, Christoph and Apalla, Zoe and Argenziano, Giuseppe and Codella, Noel and Halpern, Allan and Janda, Monika and Lallas, Aimilios and Longo, Caterina and Malvehy, Josep and Paoli, John and Puig, Susana and Rosendahl, Cliff and Soyer, H. Peter and Zalaudek, Iris and Kittler, Harald},
    month = {6},
    pages = {1--6},
    publisher = {Nature Research},
    url = {https://doi.org/10.1038/s41591-020-0942-0},
    doi = {10.1038/s41591-020-0942-0},
    issn = {1546170X},
    pmid = {32572267},
    keywords = {Diagnosis, Skin cancer}
}

@article{Tschandl2020,
    title = {{Human–computer collaboration for skin cancer recognition}},
    year = {2020},
    journal = {Nature Medicine},
    author = {Tschandl, Philipp and Rinner, Christoph and Apalla, Zoe and Argenziano, Giuseppe and Codella, Noel and Halpern, Allan and Janda, Monika and Lallas, Aimilios and Longo, Caterina and Malvehy, Josep and Paoli, John and Puig, Susana and Rosendahl, Cliff and Soyer, H Peter and Zalaudek, Iris and Kittler, Harald},
    number = {8},
    pages = {1229--1234},
    volume = {26},
    url = {https://doi.org/10.1038/s41591-020-0942-0},
    doi = {10.1038/s41591-020-0942-0},
    issn = {1546-170X}
}

@inproceedings{Rhee2018,
    title = {{Hybrid Approach of Relation Network and Localized Graph Convolutional Filtering for Breast Cancer Subtype Classification}},
    year = {2018},
    booktitle = {International Joint Conference on Artificial Intelligence},
    author = {Rhee, Sungmin and Seo, Seokjun and Kim, Sun},
    month = {11},
    url = {http://arxiv.org/abs/1711.05859},
    arxivId = {1711.05859}
}

@inproceedings{Bala1995,
    title = {{Hybrid learning using genetic algorithms and decision trees for pattern classification}},
    year = {1995},
    author = {Bala, J. and Huang, J. and Vafaie, H. and DeJong, K. and Wechsler, H.},
    pages = {719--724},
    volume = {14}
}

@inproceedings{Mullapudi2018,
    title = {{HydraNets: Specialized Dynamic Architectures for Efficient Inference}},
    year = {2018},
    booktitle = {Computer Vision and Pattern Recognition},
    author = {Mullapudi, Ravi Teja and Mark, William R. and Shazeer, Noam and Fatahalian, Kayvon},
    isbn = {9781538664209},
    doi = {10.1109/CVPR.2018.00843},
    issn = {10636919}
}

@article{Hariharan2014,
    title = {{Hypercolumns for Object Segmentation and Fine-grained Localization}},
    year = {2014},
    author = {Hariharan, Bharath and Arbel{\'{a}}ez, Pablo and Girshick, Ross and Malik, Jitendra},
    month = {11},
    url = {http://arxiv.org/abs/1411.5752},
    arxivId = {1411.5752}
}

@inproceedings{Tan2019b,
    title = {{Icentia11K: An Unsupervised Representation Learning Dataset for Arrhythmia Subtype Discovery}},
    year = {2019},
    author = {Tan, Shawn and Androz, Guillaume and Chamseddine, Ahmad and Fecteau, Pierre and Courville, Aaron and Bengio, Yoshua and Cohen, Joseph Paul},
    month = {10},
    url = {http://arxiv.org/abs/1910.09570},
    arxivId = {1910.09570}
}

@article{Torrente2016,
    title = {{Identification of Cancer Related Genes Using a Comprehensive Map of Human Gene Expression}},
    year = {2016},
    journal = {PLOS ONE},
    author = {Torrente, Aurora and Lukk, Margus and Xue, Vincent and Parkinson, Helen and Rung, Johan and Brazma, Alvis},
    editor = {Provero, Paolo},
    number = {6},
    month = {6},
    pages = {e0157484},
    volume = {11},
    publisher = {Public Library of Science},
    url = {http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0157484&type=printable http://dx.plos.org/10.1371/journal.pone.0157484},
    doi = {10.1371/journal.pone.0157484},
    issn = {1932-6203}
}

@article{Harada2005,
    title = {{Identification of novel mammalian growth regulatory factors by genome-scale quantitative image analysis.}},
    year = {2005},
    journal = {Genome Res},
    author = {Harada, J N and Bower, K E and Orth, A P and Callaway, S and Nelson, C G and Laris, C and Hogenesch, J B and Vogt, P K and Chanda, S K},
    volume = {15},
    url = {http://dx.doi.org/10.1101/gr.3889305},
    doi = {10.1101/gr.3889305}
}

@article{Bjorklund2006,
    title = {{Identification of pathways regulating cell size and cell-cycle progression by RNAi.}},
    year = {2006},
    journal = {Nature},
    author = {Bjorklund, M and Taipale, M and Varjosalo, M and Saharinen, J and Lahdenpera, J and Taipale, J},
    volume = {439},
    url = {http://dx.doi.org/10.1038/nature04469},
    doi = {10.1038/nature04469}
}

@article{Sevik2014DRIMDB,
    title = {{Identification of suitable fundus images using automated quality assessment methods}},
    year = {2014},
    journal = {Journal of Biomedical Optics},
    author = {Sevik, Ugur and K{\"{o}}se, Cemal and Berber, Tolga and Erd{\"{o}}l, Hidayet},
    number = {4},
    month = {4},
    pages = {046006},
    volume = {19},
    publisher = {SPIE-Intl Soc Optical Eng},
    doi = {10.1117/1.jbo.19.4.046006},
    issn = {1083-3668}
}

@article{Heimgartner2009,
    title = {{Identification of the User by Analyzing Human Computer Interaction}},
    year = {2009},
    journal = {Human-Computer Interaction. Ambient, Ubiquitous and Intelligent Interaction},
    author = {Heimg{\"{a}}rtner, R.},
    pages = {275–283},
    url = {http://www.springerlink.com/index/k1256rx878766745.pdf}
}

@article{Dauphin2014,
    title = {{Identifying and attacking the saddle point problem in high-dimensional non-convex optimization}},
    year = {2014},
    journal = {arXiv},
    author = {Dauphin, Yann and Pascanu, Razvan and Gulcehre, Caglar and Cho, Kyunghyun and Ganguli, Surya and Bengio, Yoshua},
    pages = {1--14},
    publisher = {Curran Associates, Inc.},
    url = {http://papers.nips.cc/paper/5486-sparse-pca-via-covariance-thresholding http://papers.nips.cc/paper/5486-sparse-pca-via-covariance-thresholding.pdf http://arxiv.org/abs/1406.2572},
    isbn = {1406.2572},
    issn = {10495258},
    arxivId = {1406.2572}
}

@article{Pfister2018,
    title = {{Identifying Causal Structure in Large-Scale Kinetic Systems}},
    year = {2018},
    author = {Pfister, Niklas and Bauer, Stefan and Peters, Jonas},
    month = {10},
    url = {http://arxiv.org/abs/1810.11776},
    arxivId = {1810.11776}
}

@article{Kermany2018,
    title = {{Identifying Medical Diagnoses and Treatable Diseases by Image-Based Deep Learning}},
    year = {2018},
    journal = {Cell},
    author = {Kermany, Daniel S and Goldbaum, Michael and Cai, Wenjia and Valentim, Carolina C S and Liang, Huiying and Baxter, Sally L and McKeown, Alex and Yang, Ge and Wu, Xiaokang and Yan, Fangbing and Dong, Justin and Prasadha, Made K and Pei, Jacqueline and Ting, Magdalene Y L and Zhu, Jie and Li, Christina and Hewett, Sierra and Dong, Jason and Ziyar, Ian and Shi, Alexander and Zhang, Runze and Zheng, Lianghong and Hou, Rui and Shi, William and Fu, Xin and Duan, Yaou and Huu, Viet A N and Wen, Cindy and Zhang, Edward D and Zhang, Charlotte L and Li, Oulan and Wang, Xiaobo and Singer, Michael A and Sun, Xiaodong and Xu, Jie and Tafreshi, Ali and Lewis, M Anthony and Xia, Huimin and Zhang, Kang},
    url = {https://doi.org/10.1016/j.cell.2018.02.010},
    doi = {10.1016/j.cell.2018.02.010},
    issn = {0092-8674}
}

@incollection{NIPS2010_4078,
    title = {{Identifying Patients at Risk of Major Adverse Cardiovascular Events Using Symbolic Mismatch}},
    year = {2010},
    booktitle = {Advances in Neural Information Processing Systems 23},
    author = {Syed, Zeeshan and Guttag, John V},
    editor = {Lafferty, J D and Williams, C K I and Shawe-Taylor, J and Zemel, R S and Culotta, A},
    pages = {2262--2270},
    publisher = {Curran Associates, Inc.},
    url = {http://papers.nips.cc/paper/4078-identifying-patients-at-risk-of-major-adverse-cardiovascular-events-using-symbolic-mismatch.pdf}
}

@article{Yang1991,
    title = {{Identifying syntactic differences between two programs}},
    year = {1991},
    journal = {Software - Practice and Experience},
    author = {Yang, W.},
    number = {7},
    pages = {739–755},
    volume = {21}
}

@article{yang_identifying_1991,
    title = {{Identifying syntactic differences between two programs}},
    year = {1991},
    journal = {Software - Practice and Experience},
    author = {Yang, W}
}

@article{Gil2002,
    title = {{Image analysis and morphometry in the diagnosis of breast cancer.}},
    year = {2002},
    journal = {Microsc Res Tech},
    author = {Gil, J and Wu, H and Wang, B Y},
    volume = {59},
    url = {http://dx.doi.org/10.1002/jemt.10182},
    doi = {10.1002/jemt.10182}
}

@article{Lindblad2004,
    title = {{Image analysis for automatic segmentation of cytoplasms and classification of Rac1 activation.}},
    year = {2004},
    journal = {Cytometry A},
    author = {Lindblad, J and Wahlby, C and Bengtsson, E and Zaltsman, A},
    volume = {57},
    url = {http://dx.doi.org/10.1002/cyto.a.10107},
    doi = {10.1002/cyto.a.10107}
}

@article{Abramoff2004,
    title = {{Image processing with ImageJ.}},
    year = {2004},
    journal = {Biophotonics International},
    author = {Abramoff, M D and Magalhaes, P J and Ram, S J},
    volume = {11}
}

@article{Wang2004,
    title = {{Image quality assessment: from error visibility to structural similarity}},
    year = {2004},
    journal = {IEEE Transactions on Image Processing},
    author = {Wang, Z. and Bovik, A. C. and Sheikh, H. R. and Simoncelli, E. P.},
    url = {https://ieeexplore.ieee.org/abstract/document/1284395/}
}

@article{Zhu2018,
    title = {{Image reconstruction by domain-transform manifold learning}},
    year = {2018},
    journal = {Nature},
    author = {Zhu, Bo and Liu, Jeremiah Z. and Cauley, Stephen F. and Rosen, Bruce R. and Rosen, Matthew S.},
    number = {7697},
    month = {3},
    pages = {487--492},
    volume = {555},
    url = {http://www.nature.com/doifinder/10.1038/nature25988},
    doi = {10.1038/nature25988},
    issn = {0028-0836}
}

@inproceedings{Ju2013,
    title = {{Image segmentation based on adaptive threshold edge detection and mean shift}},
    year = {2013},
    author = {Ju, Zengwei and Zhou, Jingli and Wang, Xian and Shu, Qin},
    pages = {385–388},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6615330 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=6615330&abstractAccess=no&userType=inst}
}

@article{Zhang2008,
    title = {{Image segmentation evaluation: A survey of unsupervised methods}},
    year = {2008},
    journal = {Computer Vision and Image Understanding},
    author = {Zhang, Hui and Fritts, Jason E. and Goldman, Sally A.},
    number = {2},
    pages = {260--280},
    volume = {110},
    doi = {10.1016/j.cviu.2007.08.003},
    issn = {10773142},
    keywords = {Empirical goodness measure, Image segmentation, Objective evaluation, Unsupervised evaluation}
}

@inproceedings{Darwish2003,
    title = {{Image segmentation for the purpose of object-based classification}},
    year = {2003},
    author = {Darwish, Ahmed and Leukert, Kristin and Reinhardt, Wolfgang},
    pages = {III–2039},
    volume = {3},
    url = {http://www.ecognition.com/sites/default/files/337_fr07_1420.pdf}
}

@inproceedings{Isola2017,
    title = {{Image-to-image translation with conditional adversarial networks}},
    year = {2017},
    booktitle = {Computer Vision and Pattern Recognition},
    author = {Isola, Phillip and Zhu, Jun-Yan and Zhou, Tinghui and Efros, Alexei A.},
    url = {http://openaccess.thecvf.com/content_cvpr_2017/papers/Isola_Image-To-Image_Translation_With_CVPR_2017_paper.pdf}
}

@article{Krizhevsky2012,
    title = {{ImageNet Classification with Deep Convolutional Neural Networks}},
    year = {2012},
    journal = {Advances In Neural Information Processing Systems},
    author = {Krizhevsky, Alex and Sutskever, Ilya and Hinton, Geoffrey E.},
    pages = {1--9},
    url = {http://papers.nips.cc/paper/4824-imagenet-classification-w http://papers.nips.cc/paper/4824-imagenet-classification-w.pdf},
    isbn = {9781627480031},
    doi = {http://dx.doi.org/10.1016/j.protcy.2014.09.007},
    issn = {10495258},
    pmid = {7491034},
    arxivId = {1102.0183}
}

@inproceedings{krizhevsky2012imagenet,
    title = {{Imagenet classification with deep convolutional neural networks}},
    year = {2012},
    booktitle = {Advances in neural information processing systems},
    author = {Krizhevsky, Alex and Sutskever, Ilya and Hinton, Geoffrey E},
    pages = {1097--1105}
}

@article{Russakovsky2015,
    title = {{ImageNet Large Scale Visual Recognition Challenge}},
    year = {2015},
    journal = {International Journal of Computer Vision},
    author = {Russakovsky, Olga and Deng, Jia and Su, Hao and Krause, Jonathan and Satheesh, Sanjeev and Ma, Sean and Huang, Zhiheng and Karpathy, Andrej and Khosla, Aditya and Bernstein, Michael and Berg, Alexander C. and Fei-Fei, Li},
    number = {3},
    month = {4},
    pages = {211--252},
    volume = {115},
    url = {http://link.springer.com/article/10.1007/s11263-015-0816-y http://link.springer.com/article/10.1007/s11263-015-0816-y?sa_campaign=email/event/articleAuthor/onlineFirst# http://link.springer.com/content/pdf/10.1007%2Fs11263-015-0816-y.pdf},
    isbn = {0920-5691},
    doi = {10.1007/s11263-015-0816-y},
    issn = {15731405},
    pmid = {16190471},
    arxivId = {1409.0575},
    keywords = {Benchmark, Dataset, Large-scale, Object detection, Object recognition},
    language = {en}
}

@inproceedings{imagenet_cvpr09,
    title = {{ImageNet: A Large-Scale Hierarchical Image Database}},
    year = {2009},
    booktitle = {Computer Vision and Pattern Recognition},
    author = {Deng, J and Dong, W and Socher, R and Li, L.-J. and Li, K and Fei-Fei, L}
}

@misc{10.4103/1817-1737.69106,
    title = {{Imaging lung manifestations of HIV/AIDS}},
    year = {2010},
    booktitle = {Annals of Thoracic Medicine},
    author = {Allen, Carolyn M. and Al-Jahdali, Hamdan H. and Irion, Klaus L. and Al Ghanem, Sarah Ai and Gouda, Alaa and Khan, Ali Nawaz},
    number = {4},
    month = {10},
    pages = {201--216},
    volume = {5},
    publisher = {Ann Thorac Med},
    doi = {10.4103/1817-1737.69106},
    issn = {18171737},
    keywords = {HIV/AIDS, imaging lung, mediastinal manifestations}
}

@article{10.1148/ryct.2020200034,
    title = {{Imaging Profile of the COVID-19 Infection: Radiologic Findings and Literature Review}},
    year = {2020},
    journal = {Radiology: Cardiothoracic Imaging},
    author = {Ng, Ming-Yen and Lee, Elaine YP and Yang, Jin and Yang, Fangfang and Li, Xia and Wang, Hongxia and Lui, Macy Mei-sze and Lo, Christine Shing-Yen and Leung, Barry and Khong, Pek-Lan and Hui, Christopher Kim-Ming and Yuen, Kwok-yung and Kuo, Michael David},
    month = {2},
    publisher = {Radiological Society of North America (RSNA)},
    url = {http://pubs.rsna.org/doi/10.1148/ryct.2020200034},
    doi = {10.1148/ryct.2020200034},
    issn = {2638-6135},
    keywords = {2019 novel coronavirus, CT chest, Wuhan, chest radiograph, review}
}

@article{Degirmenci2010,
    title = {{Impact Crater Detection on Mars Digital Elevation and Image Model}},
    year = {2010},
    journal = {Middle East Technical University},
    author = {Degirmenci, Mert and Ashyralyyev, Shatlyk},
    url = {http://www.ceng.metu.edu.tr/~e1560051/docs/Impact_Crater_Detection.pdf}
}

@article{Bandeira2007,
    title = {{Impact crater recognition on Mars based on a probability volume created by template matching}},
    year = {2007},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Bandeira, Louren\cco and Saraiva, Jose and Pina, Pedro},
    number = {12},
    pages = {4008–4015},
    volume = {45},
    url = {http://cerena.ist.utl.pt/lpcbandeira/docs/2007TGRS/TGRS2007_preprint.pdf http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4378534&abstractAccess=no&userType=inst}
}

@inproceedings{Menzies2008,
    title = {{Implications of ceiling effects in defect predictors}},
    year = {2008},
    author = {Menzies, T. and Turhan, B. and Bener, A. and Gay, G. and Cukic, B. and Jiang, Y.},
    pages = {47–54},
    url = {http://dl.acm.org/citation.cfm?id=1370801}
}

@article{Phan2020,
    title = {{Importation and Human-to-Human Transmission of a Novel Coronavirus in Vietnam}},
    year = {2020},
    journal = {New England Journal of Medicine},
    author = {Phan, Lan T. and Nguyen, Thuong V. and Luong, Quang C. and Nguyen, Thinh V. and Nguyen, Hieu T. and Le, Hung Q. and Nguyen, Thuc T. and Cao, Thang M. and Pham, Quang D.},
    month = {1},
    publisher = {Massachusetts Medical Society},
    doi = {10.1056/nejmc2001272},
    issn = {0028-4793},
    pmid = {31991079}
}

@article{Wang2013,
    title = {{Improved image alignment method in application to X-ray images and biological images}},
    year = {2013},
    journal = {Bioinformatics},
    author = {Wang, C.-W. and Chen, H.-C.},
    number = {15},
    month = {8},
    pages = {1879--1887},
    volume = {29},
    publisher = {Oxford University Press},
    url = {https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btt309},
    doi = {10.1093/bioinformatics/btt309},
    issn = {1367-4803}
}

@article{DeVries2017,
    title = {{Improved Regularization of Convolutional Neural Networks with Cutout}},
    year = {2017},
    journal = {arXiv preprint arXiv:1708.04552},
    author = {DeVries, Terrance and Taylor, Graham W.},
    month = {8},
    url = {http://arxiv.org/abs/1708.04552},
    arxivId = {1708.04552}
}

@inproceedings{Salimans2016ImprovedTechniques,
    title = {{Improved Techniques for Training GANs}},
    year = {2016},
    booktitle = {Neural Information Processing Systems},
    author = {Salimans, Tim and Goodfellow, Ian and Zaremba, Wojciech and Cheung, Vicki and Radford, Alec and Chen, Xi},
    url = {http://arxiv.org/abs/1606.03498},
    arxivId = {1606.03498}
}

@article{Li2020COVIDSev2,
    title = {{Improvement and Multi-Population Generalizability of a Deep Learning-Based Chest Radiograph Severity Score for COVID-19}},
    year = {2020},
    journal = {medRxiv},
    author = {Li, Matthew D and Arun, Nishanth T and Aggarwal, Mehak and Gupta, Sharut and Singh, Praveer and Little, Brent P and Mendoza, Dexter P and Corradi, Gustavo C.A. and Takahashi, Marcelo S and Ferraciolli, Suely F and Succi, Marc D and Lang, Min and Bizzo, Bernardo C and Dayan, Ittai and Kitamura, Felipe C and Kalpathy-Cramer, Jayashree},
    month = {9},
    publisher = {Cold Spring Harbor Laboratory Press},
    url = {https://doi.org/10.1101/2020.09.15.20195453},
    isbn = {10.1101/2020.09.1},
    doi = {10.1101/2020.09.15.20195453}
}

@article{Finnoff1993,
    title = {{Improving model selection by nonconvergent methods}},
    year = {1993},
    journal = {Neural Networks},
    author = {Finnoff, William and Hergert, Ferdinand and Zimmermann, Hans Georg},
    number = {6},
    month = {1},
    pages = {771--783},
    volume = {6},
    publisher = {Pergamon},
    url = {https://www.sciencedirect.com/science/article/pii/S0893608005801224},
    doi = {10.1016/S0893-6080(05)80122-4},
    issn = {08936080},
    keywords = {Cross-validation, Dynamic topology modifications, Generalization, Model selection, Nonconvergent training, Penalty terms, Weight pruning}
}

@article{hinton2012improving,
    title = {{Improving neural networks by preventing co-adaptation of feature detectors}},
    year = {2012},
    journal = {arXiv:1207.0580},
    author = {Hinton, Geoffrey E. and Srivastava, Nitish and Krizhevsky, Alex and Sutskever, Ilya and Salakhutdinov, Ruslan R.},
    url = {http://arxiv.org/abs/1207.0580},
    isbn = {9781467394673},
    doi = {arXiv:1207.0580},
    issn = {9781467394673},
    pmid = {1000104337},
    arxivId = {1207.0580}
}

@book{Avati,
    title = {{Improving Palliative Care with Deep Learning}},
    author = {Avati, Anand and Jung, Kenneth and Harman, Stephanie and Downing, Lance and Ng, Andrew and Shah, Nigam H},
    url = {https://arxiv.org/pdf/1711.06402.pdf},
    isbn = {9781509016297},
    arxivId = {1711.06402v1}
}

@article{Ando2017,
    title = {{Improving Phenotypic Measurements in High-Content Imaging Screens}},
    year = {2017},
    author = {Ando, D Michael and Mclean, Cory Y and Berndl, Marc},
    url = {http://dx.doi.org/10.1101/161422},
    doi = {10.1101/161422}
}

@article{Crawford2020,
    title = {{Incorporating biological structure into machine learning models in biomedicine}},
    year = {2020},
    journal = {Current Opinion in Biotechnology},
    author = {Crawford, Jake and Greene, Casey S},
    month = {6},
    pages = {126--134},
    volume = {63},
    url = {https://linkinghub.elsevier.com/retrieve/pii/S0958166919301594},
    doi = {10.1016/j.copbio.2019.12.021},
    issn = {09581669}
}

@inproceedings{Ren2019IncrementalFew-Shot,
    title = {{Incremental Few-Shot Learning with Attention Attractor Networks}},
    year = {2019},
    booktitle = {Neural Information Processing Systems},
    author = {Ren, Mengye and Liao, Renjie and Fetaya, Ethan and Zemel, Richard S},
    pages = {5275--5285}
}

@article{Porwal2018,
    title = {{Indian Diabetic Retinopathy Image Dataset (IDRiD): A Database for Diabetic Retinopathy Screening Research}},
    year = {2018},
    journal = {Data},
    author = {Porwal, Prasanna and Pachade, Samiksha and Kamble, Ravi and Kokare, Manesh and Deshmukh, Girish and Sahasrabuddhe, Vivek and Meriaudeau, Fabrice},
    number = {3},
    month = {7},
    pages = {25},
    volume = {3},
    publisher = {Multidisciplinary Digital Publishing Institute},
    url = {http://www.mdpi.com/2306-5729/3/3/25},
    doi = {10.3390/data3030025},
    issn = {2306-5729},
    keywords = {diabetic macular edema, diabetic retinopathy, retinal fundus images}
}

@inproceedings{Hamilton2017,
    title = {{Inductive Representation Learning on Large Graphs}},
    year = {2017},
    booktitle = {Neural Information Processing Systems},
    author = {Hamilton, William L. and Ying, Rex and Leskovec, Jure},
    url = {http://arxiv.org/abs/1706.02216},
    arxivId = {1706.02216}
}

@article{Chen,
    title = {{InfoGAN: Interpretable Representation Learning by Information Maximizing Generative Adversarial Nets}},
    author = {Chen, Xi and Duan, Yan and Houthooft, Rein and Schulman, John and Sutskever, Ilya},
    url = {https://arxiv.org/pdf/1606.03657.pdf}
}

@inproceedings{Taghanaki2019InfoMask,
    title = {{InfoMask: Masked Variational Latent Representation to Localize Chest Disease}},
    year = {2019},
    booktitle = {Medical Image Computing and Computer Assisted Interventions},
    author = {Taghanaki, Saeid Asgari and Havaei, Mohammad and Berthier, Tess and Dutil, Francis and Di Jorio, Lisa and Hamarneh, Ghassan and Bengio, Yoshua},
    month = {3},
    publisher = {Springer},
    url = {http://arxiv.org/abs/1903.11741},
    isbn = {9783030322250},
    doi = {10.1007/978-3-030-32226-7{\_}82},
    issn = {16113349},
    arxivId = {1903.11741},
    keywords = {Disease localization, Mutual information, Variational representation}
}

@article{Swedlow2003,
    title = {{Informatics and quantitative analysis in biological imaging.}},
    year = {2003},
    journal = {Science},
    author = {Swedlow, J R and Goldberg, I and Brauner, E and Sorger, P K},
    volume = {300},
    url = {http://dx.doi.org/10.1126/science.1082602},
    doi = {10.1126/science.1082602}
}

@article{Xiao2004,
    title = {{Information extraction from the web: System and techniques}},
    year = {2004},
    journal = {Applied Intelligence},
    author = {Xiao, L. and Wissmann, D. and Brown, M. and Jablonski, S.}
}

@article{Chidlovskii2003,
    title = {{Information extraction from tree documents by learning subtree delimiters}},
    year = {2003},
    journal = {IJCAI Workshop on Information Integration on the Web},
    author = {Chidlovskii, Boris}
}

@article{Kosala2002,
    title = {{Information Extraction in Structured Documents Using Tree Automata Induction}},
    year = {2002},
    journal = {Principles of Data Mining and Knowledge Discovery},
    author = {Kosala, Raymondus and den Bussche, Jan and Bruynooghe, Maurice and Blockeel, Hendrik},
    pages = {269--287},
    volume = {2431},
    publisher = {Springer, Berlin, Heidelberg},
    isbn = {978-3-540-44037-6},
    doi = {10.1007/3-540-45681-3{\_}25}
}

@article{Kosala2002a,
    title = {{Information Extraction in Structured Documents Using Tree Automata Induction}},
    year = {2002},
    journal = {Principles of Data Mining and Knowledge Discovery},
    author = {Kosala, Raymondus and den Bussche, Jan and Bruynooghe, Maurice and Blockeel, Hendrik},
    pages = {269--287},
    volume = {2431},
    isbn = {978-3-540-44037-6},
    doi = {10.1007/3-540-45681-3{\_}25}
}

@inproceedings{Salamuniccar2011,
    title = {{Integrated crater detection algorithm and systematic cataloging of phobos craters}},
    year = {2011},
    author = {Salamuniccar, G. and Loncaric, S. and Pina, Pedro and Bandeira, Louren\cco and Saraiva, José},
    pages = {591–596},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6046674 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6046674&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6046674}
}

@article{Young2008,
    title = {{Integrating high-content screening and ligand-target prediction to identify mechanism of action}},
    year = {2008},
    journal = {Nature Chemical Biology},
    author = {Young, Daniel W. and Bender, Andreas and Hoyt, Jonathan and McWhinnie, Elizabeth and Chirn, Gung Wei and Tao, Charles Y. and Tallarico, John A. and Labow, Mark and Jenkins, Jeremy L. and Mitchison, Timothy J. and Feng, Yan},
    number = {1},
    pages = {59--68},
    volume = {4},
    isbn = {1552-4469 (Electronic)},
    doi = {10.1038/nchembio.2007.53},
    issn = {15524469},
    pmid = {18066055}
}

@article{Tsou2004,
    title = {{Integrating Web-based GIS and image processing tools for environmental monitoring and natural resource management}},
    year = {2004},
    journal = {Journal of Geographical Systems},
    author = {Tsou, Ming-Hsiang},
    number = {2},
    month = {6},
    volume = {6},
    url = {http://springerlink.metapress.com/openurl.asp?genre=article&id=doi:10.1007/s10109-004-0131-6},
    doi = {10.1007/s10109-004-0131-6},
    issn = {1435-5930}
}

@article{Detours2003,
    title = {{Integration and cross‐validation of high‐throughput gene expression data: comparing heterogeneous data sets}},
    year = {2003},
    journal = {FEBS letters},
    author = {Detours, V and Dumont, JE and Bersini, H and Maenhaut, C},
    url = {http://onlinelibrary.wiley.com/doi/10.1016/S0014-5793(03)00522-2/full}
}

@article{Lim2015,
    title = {{Integration of Hedgehog and mutant FLT3 signaling in myeloid leukemia.}},
    year = {2015},
    journal = {Science translational medicine},
    author = {Lim, Yiting and Gondek, Lukasz and Li, Li and Wang, Qiuju and Ma, Hayley and Ma, Haley and Chang, Emily and Huso, David L and Foerster, Sarah and Marchionni, Luigi and McGovern, Karen and Watkins, David Neil and Peacock, Craig D and Levis, Mark and Smith, Bruce Douglas and Merchant, Akil A and Small, Donald and Matsui, William},
    number = {291},
    month = {6},
    pages = {291ra96},
    volume = {7},
    publisher = {NIH Public Access},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/26062848 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4644635},
    doi = {10.1126/scitranslmed.aaa5731},
    issn = {1946-6242},
    pmid = {26062848}
}

@article{PMID23550210,
    title = {{Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.}},
    year = {2013},
    journal = {Science signaling},
    author = {Gao, Jianjiong and Aksoy, Bülent Arman and Dogrusoz, Ugur and Dresdner, Gideon and Gross, Benjamin and Sumer, S Onur and Sun, Yichao and Jacobsen, Anders and Sinha, Rileen and Larsson, Erik and Cerami, Ethan and Sander, Chris and Schultz, Nikolaus},
    number = {269},
    month = {4},
    pages = {pl1},
    volume = {6},
    publisher = {NIH Public Access},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/23550210 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4160307},
    doi = {10.1126/scisignal.2004088},
    issn = {1937-9145},
    pmid = {23550210}
}

@inproceedings{Bradski,
    title = {{Intel's Computer Vision Library: applications in calibration, stereo segmentation, tracking, gesture, face and object recognition}},
    shorttitle = {Intel's Computer Vision Library},
    author = {Bradski, G.R. and Pisarevsky, V.},
    pages = {796--797},
    url = {http://ieeexplore.ieee.org/Xplore/login.jsp?url=http%253A%252F%252Fieeexplore.ieee.org%252Fiel5%252F6894%252F18560%252F00854964.pdf%253Farnumber%253D854964&authDecision=-203},
    address = {Hilton Head Island, SC, USA},
    doi = {10.1109/CVPR.2000.854964}
}

@article{Moriggl,
    title = {{Intelligent Code Inspection using Static Code Features}},
    author = {Moriggl, I.},
    url = {http://www.sea-mist.se/fou/cuppsats.nsf/all/b37f87ab9c0cbb15c12577a6004b9de0/$file/BTH-irmo-thesis.pdf http://www.bth.se/fou/cuppsats.nsf/6753b78eb2944e0ac1256608004f0535/b37f87ab9c0cbb15c12577a6004b9de0?OpenDocument}
}

@incollection{Urbach2015,
    title = {{Intelligent Object Detection Using Trees}},
    year = {2015},
    author = {Urbach, Erik R.},
    editor = {Benediktsson, Jón Atli and Chanussot, Jocelyn and Najman, Laurent and Talbot, Hugues},
    month = {5},
    pages = {289--300},
    series = {Lecture Notes in Computer Science},
    publisher = {Springer International Publishing},
    url = {http://link.springer.com/chapter/10.1007/978-3-319-18720-4_25 http://link.springer.com/chapter/10.1007%2F978-3-319-18720-4_25#page-1 http://link.springer.com/content/pdf/10.1007%2F978-3-319-18720-4_25.pdf},
    isbn = {978-3-319-18719-8 978-3-319-18720-4},
    language = {en}
}

@book{nedjah_intelligent_2009,
    title = {{Intelligent text categorization and clustering}},
    year = {2009},
    author = {Nedjah, N.},
    volume = {164},
    publisher = {Springer Verlag},
    url = {http://books.google.com/books?hl=en&lr=&id=DTlW1SzW2ZEC&oi=fnd&pg=PA1&dq=Intelligent+text+categorization+and+clustering&ots=KH13aJLxro&sig=UI-Ht44LgPGZ3SN2g1xuLoA5wCQ}
}

@inproceedings{Boykov2001,
    title = {{Interactive graph cuts for optimal boundary {\&} region segmentation of objects in ND images}},
    year = {2001},
    author = {Boykov, Yuri Y. and Jolly, M.-P.},
    pages = {105–112},
    volume = {1},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=937505 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=937505&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D937505 http://pdf.aminer.org/000/292/851/demonstration_of_segme}
}

@article{Protiere2007,
    title = {{Interactive image segmentation via adaptive weighted distances}},
    year = {2007},
    journal = {Image Processing, IEEE Transactions on},
    author = {Protiere, Alexis and Sapiro, Guillermo},
    number = {4},
    pages = {1046–1057},
    volume = {16},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4130436 http://www.znu.ac.ir/data/members/fazli_saeid/DIP/Paper/ISSUE4/04130436.pdf}
}

@inproceedings{Arteta2014,
    title = {{Interactive object counting}},
    year = {2014},
    booktitle = {European Conference on Computer Vision},
    author = {Arteta, Carlos and Lempitsky, Victor and Noble, J. Alison and Zisserman, Andrew},
    url = {http://link.springer.com/10.1007/978-3-319-10578-9_33},
    doi = {10.1007/978-3-319-10578-9{\_}33},
    keywords = {Interactive vision systems, biomedical image analysis, object counting, relevance feedback, visual recognition}
}

@article{Markus1989,
    title = {{Interobserver variation in the interpretation of abdominal radiographs}},
    year = {1989},
    journal = {Radiology},
    author = {Markus, J. B. and Somers, S. and Franic, S. E. and Moola, C. and Stevenson, G. W.},
    number = {1},
    pages = {69--71},
    volume = {171},
    doi = {10.1148/radiology.171.1.2928547},
    issn = {00338419}
}

@article{Markus1989a,
    title = {{Interobserver variation in the interpretation of abdominal radiographs}},
    year = {1989},
    journal = {Radiology},
    author = {Markus, J. B. and Somers, S. and Franic, S. E. and Moola, C. and Stevenson, G. W.},
    number = {1},
    pages = {69--71},
    volume = {171},
    doi = {10.1148/radiology.171.1.2928547},
    issn = {00338419}
}

@inproceedings{Morgan2002,
    title = {{Interpolation of lidar data and automatic building extraction}},
    year = {2002},
    author = {Morgan, Michel and Habib, Ayman},
    pages = {432–441},
    url = {http://twiki.cis.rit.edu/twiki/pub/Main/FengAndSteveSIMG786/interpolationoflidardataandautomaticbuildingextraction.pdf}
}

@techreport{Fong,
    title = {{Interpretable Explanations of Black Boxes by Meaningful Perturbation}},
    author = {Fong, Ruth C and Vedaldi, Andrea},
    arxivId = {1704.03296v3}
}

@inproceedings{Major2020a,
    title = {{Interpreting Medical Image Classifiers by Optimization Based Counterfactual Impact Analysis}},
    year = {2020},
    booktitle = {International Symposium on Biomedical Imaging (ISBI)},
    author = {Major, David and Lenis, Dimitrios and Wimmer, Maria and Sluiter, Gert and Berg, Astrid and B{\"{u}}hler, Katja},
    month = {4},
    url = {https://arxiv.org/abs/2004.01610},
    arxivId = {2004.01610}
}

@article{Major2020MedCounterfactual,
    title = {{Interpreting Medical Image Classifiers by Optimization Based Counterfactual Impact Analysis}},
    year = {2020},
    author = {Major, David and Lenis, Dimitrios and Wimmer, Maria and Sluiter, Gert and Berg, Astrid and B{\"{u}}hler, Katja},
    month = {4},
    url = {http://arxiv.org/abs/2004.01610},
    arxivId = {2004.01610}
}

@book{tan_introduction_2006,
    title = {{Introduction to data mining}},
    year = {2006},
    author = {Tan, P. N and Steinbach, M. and Kumar, V. and {others}},
    publisher = {Pearson Addison Wesley Boston},
    url = {http://pencilji.com/download/37729661.pdf}
}

@article{Datcu2007,
    title = {{Introduction to the special section on image information mining for earth observation data}},
    year = {2007},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Datcu, Mihai and d'Elia, Sergio and King, Roger L. and Bruzzone, Lorenzo},
    number = {4},
    pages = {795–798},
    volume = {45},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4137850 http://ieeexplore.ieee.org/ielx5/36/4137841/04137850.pdf?tp=&arnumber=4137850&isnumber=4137841}
}

@inproceedings{Endler1998,
    title = {{Intrusion detection. Applying machine learning to Solaris audit data}},
    year = {1998},
    author = {Endler, D.},
    pages = {268–279}
}

@article{Arjovsky2019,
    title = {{Invariant Risk Minimization}},
    year = {2019},
    author = {Arjovsky, Martin and Bottou, Léon and Gulrajani, Ishaan and Lopez-Paz, David},
    month = {7},
    url = {http://arxiv.org/abs/1907.02893},
    arxivId = {1907.02893}
}

@article{Phang2020,
    title = {{Investigating and Simplifying Masking-based Saliency Methods for Model Interpretability}},
    year = {2020},
    author = {Phang, Jason and Park, Jungkyu and Geras, Krzysztof J.},
    month = {10},
    url = {http://arxiv.org/abs/2010.09750},
    arxivId = {2010.09750}
}

@misc{Butler2013,
    title = {{Investigating journals: The dark side of publishing}},
    shorttitle = {Investigating journals},
    year = {2013},
    booktitle = {Nature},
    author = {Butler, Declan},
    number = {7442},
    month = {3},
    pages = {433--435},
    volume = {495},
    url = {http://www.nature.com/doifinder/10.1038/495433a},
    doi = {10.1038/495433a},
    issn = {00280836}
}

@misc{ref62,
    title = {{Invitation to Participate in the Comparison of Image Analysis Algorithms for Intracellular Screening. [http://www.ravkin.net/SBS/Invitation.htm]}},
    url = {http://www.ravkin.net/SBS/Invitation.htm}
}

@inproceedings{John1994,
    title = {{Irrelevant features and the subset selection problem}},
    year = {1994},
    author = {John, G. H and Kohavi, R. and Pfleger, K.}
}

@inproceedings{Skrypnyk2011,
    title = {{Irrelevant Features, Class Separability, and Complexity of Classification Problems}},
    year = {2011},
    author = {Skrypnyk, Iryna},
    month = {11},
    pages = {998 -1003},
    url = {http://ieeexplore.ieee.org/ielx5/6101101/6103298/06103462.pdf?tp=&arnumber=6103462&isnumber=6103298},
    doi = {10.1109/ICTAI.2011.171}
}

@article{Zhou2014b,
    title = {{Is Joint Training Better for Deep Auto-Encoders?}},
    year = {2014},
    author = {Zhou, Yingbo and Arpit, Devansh and Nwogu, Ifeoma and Govindaraju, Venu},
    month = {5},
    url = {http://arxiv.org/abs/1405.1380},
    arxivId = {1405.1380}
}

@misc{Lyman2020,
    title = {{Italian doctors turn to Chinese A.I. to speed up detection}},
    year = {2020},
    booktitle = {Fortune},
    author = {Lyman, Eric},
    month = {4},
    url = {https://fortune.com/2020/04/04/italy-coronavirus-symptoms-test-ai-china-covid-19/}
}

@inproceedings{Bordes2018Iteratively,
    title = {{Iteratively unveiling new regions of interest in Deep Learning models}},
    year = {2018},
    booktitle = {Medical Imaging with Deep Learning},
    author = {Bordes, Florian and Berthier, Tess and Jorio, Lisa Di and Vincent, Pascal and Bengio, Yoshua},
    url = {https://openreview.net/forum?id=rJz89iiiM}
}

@misc{JavaZOOM2010,
    title = {{JavaZOOM}},
    year = {2010},
    author = {{JavaZOOM}},
    url = {http://www.javazoom.net http://www.javazoom.net/index.shtml}
}

@article{Wu2020covidseg,
    title = {{JCS: An Explainable COVID-19 Diagnosis System by Joint Classification and Segmentation}},
    year = {2020},
    author = {Wu, Yu-Huan and Gao, Shang-Hua and Mei, Jie and Xu, Jun and Fan, Deng-Ping and Zhao, Chao-Wei and Cheng, Ming-Ming},
    month = {4},
    url = {http://arxiv.org/abs/2004.07054},
    arxivId = {2004.07054},
    keywords = {COVID-19 Dataset, CT Classification, CT Segmentation, Index Terms-COVID-19, Joint Diagnosis}
}

@misc{Robison2008,
    title = {{jFLAC}},
    year = {2008},
    author = {Robison, David R.},
    url = {http://jflac.sourceforge.net/}
}

@misc{_jsoup_,
    title = {{jsoup Java {\{}HTML{\}} Parser, with best of {\{}DOM{\}}, {\{}CSS{\}}, and jquery}},
    url = {http://jsoup.org/}
}

@techreport{Jin,
    title = {{Junction Tree Variational Autoencoder for Molecular Graph Generation}},
    author = {Jin, Wengong and Barzilay, Regina and Jaakkola, Tommi},
    url = {https://arxiv.org/pdf/1802.04364.pdf},
    arxivId = {1802.04364v2}
}

@article{Kanehisa2017,
    title = {{KEGG: new perspectives on genomes, pathways, diseases and drugs}},
    year = {2017},
    journal = {Nucleic Acids Research},
    author = {Kanehisa, Minoru and Furumichi, Miho and Tanabe, Mao and Sato, Yoko and Morishima, Kanae},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/27899662 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5210567 https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkw1092},
    doi = {10.1093/nar/gkw1092},
    issn = {0305-1048},
    pmid = {27899662}
}

@misc{chollet2015keras,
    title = {{Keras}},
    year = {2015},
    author = {Chollet, François and {others}},
    publisher = {GitHub},
    howpublished = {{\textbackslash}url{\{}https://github.com/fchollet/keras{\}}}
}

@misc{keras,
    title = {{Keras}},
    year = {2015},
    author = {Chollet, François and {others}},
    publisher = {GitHub},
    howpublished = {{\textbackslash}url{\{}https://github.com/fchollet/keras{\}}}
}

@misc{Kelly2019challenges,
    title = {{Key challenges for delivering clinical impact with artificial intelligence}},
    year = {2019},
    booktitle = {BMC Medicine},
    author = {Kelly, Christopher J. and Karthikesalingam, Alan and Suleyman, Mustafa and Corrado, Greg and King, Dominic},
    number = {1},
    month = {10},
    pages = {195},
    volume = {17},
    publisher = {BioMed Central Ltd.},
    url = {https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-019-1426-2},
    doi = {10.1186/s12916-019-1426-2},
    issn = {17417015},
    keywords = {Algorithms, Artificial intelligence, Evaluation, Machine learning, Regulation, Translation}
}

@article{Popov2004,
    title = {{KIM–a semantic platform for information extraction and retrieval}},
    year = {2004},
    journal = {Natural language engineering},
    author = {Popov, B. and Kiryakov, A. and Ognyanoff, D. and Manov, D. and Kirilov, A.},
    number = {3-4},
    pages = {375–392},
    volume = {10},
    url = {http://portal.acm.org/citation.cfm?id=1030327}
}

@misc{Fudalewski2010,
    title = {{KJ Digital Signal Synchronizer (KJDSS)}},
    year = {2010},
    author = {Fudalewski, Kris},
    url = {http://sirk.sytes.net/software/libs/kjdss http://sirk.sytes.net/software/libs/kjdss/index.htm}
}

@misc{OGC,
    title = {{KML}},
    author = {{OGC}},
    url = {http://www.opengeospatial.org/standards/kml/}
}

@article{Mostafavi2012,
    title = {{Labeling Nodes Using Three Degrees of Propagation}},
    year = {2012},
    journal = {PLoS ONE},
    author = {Mostafavi, Sara and Goldenberg, Anna and Morris, Quaid},
    editor = {Ravasi, Timothy},
    number = {12},
    month = {12},
    pages = {e51947},
    volume = {7},
    publisher = {Public Library of Science},
    url = {https://dx.plos.org/10.1371/journal.pone.0051947},
    doi = {10.1371/journal.pone.0051947},
    issn = {1932-6203}
}

@misc{ref56,
    title = {{Lamprecht M, Sabatini DM, Carpenter AE: CellProfiler: free, versatile software for automated biological image analysis. Biotechniques.}}
}

@article{Press2017,
    title = {{Language Generation with Recurrent Generative Adversarial Networks without Pre-training}},
    year = {2017},
    author = {Press, Ofir and Bar, Amir and Bogin, Ben and Berant, Jonathan and Wolf, Lior},
    month = {6},
    url = {http://arxiv.org/abs/1706.01399},
    arxivId = {1706.01399}
}

@article{herbrich2000large,
    title = {{Large margin rank boundaries for ordinal regression}},
    year = {2000},
    journal = {Advances in Large Margin Classifiers},
    author = {Herbrich, Ralf and Graepel, Thore and Obermayer, Klaus},
    publisher = {The MIT Press},
    url = {http://research.microsoft.com/apps/pubs/default.aspx?id=65610&gt;%5Cnhttp://research.microsoft.com/pubs/65610/herobergrae99.ps},
    doi = {10.1002/ardp.18440880237},
    issn = {10495258}
}

@inproceedings{Rubin2018LateralMultiView,
    title = {{Large Scale Automated Reading of Frontal and Lateral Chest X-Rays using Dual Convolutional Neural Networks}},
    year = {2018},
    booktitle = {Conference on Machine Intelligence in Medical Imaging},
    author = {Rubin, Jonathan and Sanghavi, Deepan and Zhao, Claire and Lee, Kathy and Qadir, Ashequl and Xu-Wilson, Minnan},
    month = {4},
    url = {http://arxiv.org/abs/1804.07839},
    arxivId = {1804.07839}
}

@inproceedings{gutlein_large-scale_2009,
    title = {{Large-scale attribute selection using wrappers}},
    year = {2009},
    booktitle = {Computational {\{}Intelligence{\}} and {\{}Data{\}} {\{}Mining{\}}, 2009. {\{}CIDM{\}}'09. {\{}IEEE{\}} {\{}Symposium{\}} on},
    author = {Gutlein, Martin and Frank, Eibe and Hall, Mark and Karwath, Andreas},
    pages = {332--339},
    publisher = {IEEE},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4938668 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4938668&tag=1}
}

@misc{lasagne,
    title = {{Lasagne: First release.}},
    year = {2015},
    author = {Dieleman, Sander},
    publisher = {10.5281/zenodo.27878},
    url = {http://dx.doi.org/10.5281/zenodo.27878},
    doi = {10.5281/zenodo.27878}
}

@article{Blei2003,
    title = {{Latent dirichlet allocation}},
    year = {2003},
    journal = {the Journal of machine Learning research},
    author = {Blei, David M. and Ng, Andrew Y. and Jordan, Michael I.},
    pages = {993–1022},
    volume = {3},
    url = {http://dl.acm.org/citation.cfm?id=944937 http://machinelearning.wustl.edu/mlpapers/paper_files/BleiNJ03.pdf}
}

@article{Feigin2010,
    title = {{Lateral Chest Radiograph. A Systematic Approach}},
    year = {2010},
    journal = {Academic Radiology},
    author = {Feigin, David S},
    number = {12},
    pages = {1560--1566},
    volume = {17},
    url = {https://www.academicradiology.org/article/S1076-6332(10)00406-X/pdf},
    doi = {10.1016/j.acra.2010.07.004},
    issn = {10766332},
    keywords = {Chest radiography, Chest x-ray, Lateral chest radiograph, Routine chest radiograph, Thorax radiology}
}

@inproceedings{McMillan2010,
    title = {{Lazy annotation for program testing and verification}},
    year = {2010},
    author = {McMillan, K.},
    pages = {104–118}
}

@article{Shokrollahi2003,
    title = {{LDPC Codes: An Introduction}},
    year = {2003},
    author = {Shokrollahi, Amin},
    url = {https://www.ics.uci.edu/~welling/teaching/ICS279/LPCD.pdf}
}

@misc{Jordan2001,
    title = {{Leading ML researchers issue statement of support for JMLR}},
    year = {2001},
    author = {Jordan, Michael},
    month = {10},
    url = {http://jmlr.org/statement.html}
}

@article{Aich2017,
    title = {{Leaf Counting with Deep Convolutional and Deconvolutional Networks}},
    year = {2017},
    author = {Aich, Shubhra and Stavness, Ian},
    month = {8},
    url = {http://arxiv.org/abs/1708.07570},
    arxivId = {1708.07570}
}

@inproceedings{Kaufman2011,
    title = {{Leakage in data mining: Formulation, Detection, and Avoidance}},
    year = {2011},
    booktitle = {Knowledge discovery and data mining},
    author = {Kaufman, Shachar and Rosset, Saharon and Perlich, Claudia},
    publisher = {ACM Press},
    url = {http://dl.acm.org/citation.cfm?doid=2020408.2020496},
    address = {New York, New York, USA},
    isbn = {9781450308137},
    doi = {10.1145/2020408.2020496},
    keywords = {Data mining, Leakage, Predictive modeling, Statistical inference}
}

@article{VanDerMaaten2009b,
    title = {{Learning a Parametric Embedding by Preserving Local Structure}},
    year = {2009},
    journal = {International Conference on Artificial Intelligence and Statistics (AISTATS)},
    author = {Maaten, Laurens Van Der},
    url = {https://lvdmaaten.github.io/publications/papers/AISTATS_2009.pdf},
    issn = {15324435}
}

@inproceedings{Niepert2016,
    title = {{Learning Convolutional Neural Networks for Graphs}},
    year = {2016},
    booktitle = {International Conference on Machine Learning},
    author = {Niepert, Mathias and Ahmed, Mohamed and Kutzkov, Konstantin},
    url = {http://arxiv.org/abs/1605.05273},
    isbn = {9781510829008},
    issn = {1938-7228},
    arxivId = {1605.05273}
}

@article{VanTulder2019,
    title = {{Learning Cross-Modality Representations From Multi-Modal Images}},
    year = {2019},
    journal = {IEEE Transactions on Medical Imaging},
    author = {van Tulder, Gijs and de Bruijne, Marleen},
    number = {2},
    month = {2},
    pages = {638--648},
    volume = {38},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/30188817 https://ieeexplore.ieee.org/document/8456579/},
    doi = {10.1109/TMI.2018.2868977},
    issn = {0278-0062},
    pmid = {30188817}
}

@inproceedings{Noh2015,
    title = {{Learning Deconvolution Network for Semantic Segmentation}},
    year = {2015},
    booktitle = {International Conference on Computer Vision},
    author = {Noh, Hyeonwoo and Hong, Seunghoon and Han, Bohyung},
    url = {https://arxiv.org/abs/1505.04366}
}

@article{FernandoBASURAFERNANDO,
    title = {{Learning Endtoend Video Classification with RankPooling}},
    author = {Fernando BASURAFERNANDO, Basura and Gould STEPHENGOULD, Stephen}
}

@inproceedings{Gregor2010,
    title = {{Learning Fast Approximations of Sparse Coding}},
    year = {2010},
    booktitle = {ICML},
    author = {Gregor, Karol and Lecun, Yann}
}

@article{Wang,
    title = {{Learning Finegrained Image Similarity with Deep Ranking}},
    author = {Wang, Jiang and Song, Yang and Leung, Thomas and Rosenberg, Chuck and Wang, Jingbin and Philbin, James and Chen, Bo and Wu, Ying}
}

@book{10.5555/2207825,
    title = {{Learning From Data}},
    year = {2012},
    author = {Abu-Mostafa, Yaser S and Magdon-Ismail, Malik and Lin, Hsuan-Tien},
    publisher = {AML},
    isbn = {1600490069}
}

@article{Farabet2013,
    title = {{Learning hierarchical features for scene labeling}},
    year = {2013},
    journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    author = {Farabet, Clement and Couprie, Camille and Najman, Laurent and Lecun, Yann},
    month = {8},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/23787344},
    isbn = {0162-8828 VO - 35},
    doi = {10.1109/TPAMI.2012.231},
    issn = {01628828},
    pmid = {23787344},
    arxivId = {arXiv:1011.1669v3},
    keywords = {Convolutional networks, deep learning, image classification, image segmentation, scene parsing}
}

@inproceedings{Shrikumar2017,
    title = {{Learning Important Features Through Propagating Activation Differences}},
    year = {2017},
    booktitle = {International Conference of Machine Learning Workshop on Computational Biology},
    author = {Shrikumar, Avanti and Greenside, Peyton and Kundaje, Anshul},
    month = {4},
    url = {http://arxiv.org/abs/1704.02685},
    arxivId = {1704.02685}
}

@techreport{Krizhevsky2009,
    title = {{Learning multiple layers of features from tiny images}},
    year = {2009},
    author = {Krizhevsky, Alex and Hinton, Geoffrey},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.222.9220&rep=rep1&type=pdf},
    institution = {University of Toronto}
}

@article{Krizhevsky2009CIFAR10,
    title = {{Learning Multiple Layers of Features from Tiny Images}},
    year = {2009},
    author = {Krizhevsky, A.}
}

@article{Evgeniou2005,
    title = {{Learning Multiple Tasks with Kernel Methods}},
    year = {2005},
    journal = {Journal of Machine Learning Research},
    author = {Evgeniou, Theodoros and Micchelli, Charles A. and Pontil, Massimiliano},
    number = {Apr},
    pages = {615--637},
    volume = {6},
    url = {http://www.jmlr.org/papers/v6/evgeniou05a.html},
    issn = {ISSN 1533-7928}
}

@inproceedings{yu2011learning,
    title = {{Learning patient-specific cancer survival distributions as a sequence of dependent regressors}},
    year = {2011},
    booktitle = {Neural Information Processing Systems},
    author = {Chun-nam Yu, Russell Greiner, Hsiu-chin Lin, Vickie Baracos and Lin, Hc and Baracos, Vickie and Yu, Cn and Greiner, Russell},
    pages = {1--9},
    url = {http://webdocs.cs.ualberta.ca/~chunnam/papers/nips11_survival_prediction.pdf%5Cnhttp://papers.nips.cc/paper/4210-learning-patient-specific-cancer-survival-distributions-as-a-sequence-of-dependent-regressors%5Cnhttp://citeseerx.ist.psu.edu/viewdoc/summary?},
    isbn = {9781618395993}
}

@inproceedings{Lee1997,
    title = {{Learning patterns from unix process execution traces for intrusion detection}},
    year = {1997},
    author = {Lee, W. and Stolfo, S. J and Chan, P. K},
    pages = {50–56}
}

@article{Rumelhart1988,
    title = {{Learning representations by back-propagating errors}},
    year = {1988},
    journal = {Cognitive modeling},
    author = {Rumelhart, David E. and Hinton, Geoffrey E. and Williams, Ronald J.},
    number = {3},
    pages = {1},
    volume = {5},
    url = {https://books.google.com/books?hl=en&lr=&id=FJblV_iOPjIC&oi=fnd&pg=PA213&dq=Learn-+ing+representations+by+back-propagating+errors&ots=zZHq-lKXYT&sig=mmwumxpjngi_8T6mYyT4WX-zSoY http://www.cs.toronto.edu/~hinton/absps/naturebp.pdf https://books.google.com/}
}

@techreport{Gomez,
    title = {{Learning Sparse Networks Using Targeted Dropout}},
    author = {Gomez, Aidan N and Ai, Aidan@for and Zhang, Ivan and Ai, Ivan@for and Swersky, Kevin and Gal, Yarin and Hinton, Geoffrey E},
    url = {https://arxiv.org/pdf/1905.13678.pdf},
    arxivId = {1905.13678v3}
}

@article{Hess2003,
    title = {{Learning to attach semantic metadata to web services}},
    year = {2003},
    journal = {The SemanticWeb-ISWC 2003},
    author = {He{\textbackslash}ss, A. and Kushmerick, N.},
    pages = {258–273}
}

@article{hess_learning_2003,
    title = {{Learning to attach semantic metadata to web services}},
    year = {2003},
    journal = {The {\{}SemanticWeb{\}}-{\{}ISWC{\}} 2003},
    author = {He{\textbackslash}textbackslashss, A and Kushmerick, N}
}

@article{Lempitsky2010,
    title = {{Learning To Count Objects in Images}},
    year = {2010},
    journal = {Neural Information Processing Systems (NeurIPS)},
    author = {Lempitsky, Victor and Zisserman, Andrew},
    isbn = {9781617823800},
    keywords = {Learning/Statistics {\&} Optimisation, Machine Vision}
}

@inproceedings{Segui2015,
    title = {{Learning to count with deep object features}},
    year = {2015},
    booktitle = {Conference on Computer Vision and Pattern Recognition Workshops},
    author = {Segui, Santi and Pujol, Oriol and Vitria, Jordi},
    url = {http://arxiv.org/abs/1505.08082},
    isbn = {9781467367592},
    doi = {10.1109/CVPRW.2015.7301276},
    issn = {21607516},
    arxivId = {1505.08082},
    keywords = {Accuracy, Feature extraction, Neural networks, Proposals, Supervised learning, Training, Visualization}
}

@inproceedings{Fiaschi2012,
    title = {{Learning to Count with Regression Forest and Structured Labels}},
    year = {2012},
    booktitle = {International Conference on Pattern Recognition},
    author = {Fiaschi, Luca and Nair, Rahul and Koethe, Ullrich and Hamprecht, Fred a},
    url = {http://ieeexplore.ieee.org/abstract/document/6460719/ http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6460719},
    isbn = {9784990644109},
    issn = {1051-4651}
}

@article{Arteta,
    title = {{Learning to Detect Cells Using Non-overlapping Extremal Regions}},
    author = {Arteta, Carlos and Lempitsky, Victor and Noble, J Alison and Zisserman, Andrew},
    url = {https://www.robots.ox.ac.uk/~vgg/publications/2012/Arteta12/arteta12.pdf}
}

@article{Martin2004,
    title = {{Learning to detect natural image boundaries using local brightness, color, and texture cues}},
    year = {2004},
    journal = {Pattern Analysis and Machine Intelligence, IEEE Transactions on},
    author = {Martin, David R. and Fowlkes, Charless C. and Malik, Jitendra},
    number = {5},
    pages = {530–549},
    volume = {26},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1273918 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=1273918&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D1273918 http://www.cs.virginia.edu/~gfx/courses/2007/Computer}
}

@article{Agarwal2004,
    title = {{Learning to detect objects in images via a sparse, part-based representation}},
    year = {2004},
    journal = {Pattern Analysis and Machine Intelligence, IEEE Transactions on},
    author = {Agarwal, Shivani and Awan, Aatif and Roth, Dan},
    number = {11},
    pages = {1475–1490},
    volume = {26},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1335452 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1335452 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1335452&abstractAccess=no&userType=inst}
}

@inproceedings{Mnih2010,
    title = {{Learning to detect roads in high-resolution aerial images}},
    year = {2010},
    booktitle = {Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)},
    author = {Mnih, Volodymyr and Hinton, Geoffrey E.},
    number = {PART 6},
    pages = {210--223},
    volume = {6316 LNCS},
    publisher = {Springer},
    url = {http://link.springer.com/chapter/10.1007/978-3-642-15567-3_16 https://www.cs.toronto.edu/~hinton/absps/road_detection.pdf},
    isbn = {3642155669},
    doi = {10.1007/978-3-642-15567-3{\_}16},
    issn = {03029743}
}

@article{Wetzler2005,
    title = {{Learning to Detect Small Impact Craters}},
    year = {2005},
    journal = {Applications of Computer Vision and the IEEE Workshop on Motion and Video Computing, IEEE Workshop on},
    author = {Wetzler, P. G. and Honda, R. and Enke, B. and Merline, W. J. and Chapman, C. R. and Burl, M. C.},
    pages = {178--184},
    volume = {1},
    doi = {http://doi.ieeecomputersociety.org/10.1109/ACVMOT.2005.68}
}

@inproceedings{Lampert,
    title = {{Learning to detect unseen object classes by between-class attribute transfer}},
    year = {2009},
    booktitle = {Conference on Computer Vision and Pattern Recognition Workshops},
    author = {Lampert, Christoph H and Nickisch, Hannes and Harmeling, Stefan},
    url = {http://cvml.ist.ac.at/papers/lampert-cvpr2009.pdf},
    isbn = {9781424439935},
    doi = {10.1109/CVPRW.2009.5206594}
}

@inproceedings{Lipton2016,
    title = {{Learning to Diagnose with LSTM Recurrent Neural Networks}},
    year = {2016},
    booktitle = {International Conference on Learning Representations},
    author = {Lipton, Zachary C and Kale, David C and Elkan, Charles and Wetzel Laura, Randall P and Whittier Virtual PICU, Leland K},
    url = {http://zacklipton.com},
    arxivId = {arXiv:1511.03677v7}
}

@misc{Kim2017discogan,
    title = {{Learning to Discover Cross-Domain Relations with Generative Adversarial Networks}},
    year = {2017},
    booktitle = {International Conference on Machine Learning},
    author = {Kim, Taeksoo and Cha, Moonsu and Kim, Hyunsoo and Lee, Jung Kwon and Kim, Jiwon},
    month = {3},
    url = {http://arxiv.org/abs/1703.05192},
    arxivId = {1703.05192}
}

@article{Andrychowicz2016,
    title = {{Learning to learn by gradient descent by gradient descent}},
    year = {2016},
    journal = {Neural Information Processing Systems},
    author = {Andrychowicz, Marcin and Denil, Misha and G{\'{o}}mez Colmenarejo, Sergio and Hoffman, Matthew W. and Pfau, David and Schaul, Tom and Shillingford, Brendan and de Freitas, Nando and Gomez, Sergio and Hoffman, Matthew W. and Pfau, David and Schaul, Tom and de Freitas, Nando},
    month = {6},
    url = {http://arxiv.org/abs/1606.04474},
    isbn = {1011500801515},
    doi = {10.1007/s10115-008-0151-5},
    issn = {0219-1377},
    pmid = {207591},
    arxivId = {1606.04474}
}

@article{Shao2015,
    title = {{Learning to Point and Count}},
    year = {2015},
    author = {Shao, Jie and Wang, Dequan and Xue, Xiangyang and Zhang, Zheng},
    month = {12},
    url = {http://arxiv.org/abs/1512.02326},
    arxivId = {1512.02326}
}

@article{Luck2018,
    title = {{Learning to rank for censored survival data}},
    year = {2018},
    author = {Luck, Margaux and Sylvain, Tristan and Cohen, Joseph Paul and Cardinal, Heloise and Lodi, Andrea and Bengio, Yoshua},
    month = {6},
    url = {http://arxiv.org/abs/1806.01984},
    arxivId = {1806.01984}
}

@inproceedings{burges2005learning,
    title = {{Learning to Rank using Gradient Descent}},
    year = {2005},
    booktitle = {International Conference on Machine Learning},
    author = {Burges, Christopher J C and Shaked, Tal and Renshaw, Erin and Lazier, Ari and Deeds, Matt and Hamilton, Nicole and Hullender, Greg},
    pages = {89--96},
    organization = {ACM}
}

@article{Ren2018,
    title = {{Learning to Reweight Examples for Robust Deep Learning}},
    year = {2018},
    author = {Ren, Mengye and Zeng, Wenyuan and Yang, Bin and Urtasun, Raquel},
    month = {3},
    url = {http://arxiv.org/abs/1803.09050},
    arxivId = {1803.09050}
}

@article{Long2015a,
    title = {{Learning Transferable Features with Deep Adaptation Networks}},
    year = {2015},
    journal = {Icml},
    author = {Long, Mingsheng and Cao, Yue and Wang, Jianmin and Jordan, Michael I},
    url = {https://arxiv.org/pdf/1502.02791.pdf},
    isbn = {9781510810587},
    arxivId = {arXiv:1502.02791v2},
    keywords = {Deep learning, domain adaptation, two-sample test}
}

@inproceedings{Ferrari2007,
    title = {{Learning visual attributes}},
    year = {2007},
    booktitle = {Neural Information Processing Systems},
    author = {Ferrari, Vittorio and Zisserman, Andrew},
    url = {http://www.robots.ox.ac.uk/~vgg/publications/papers/ferrari07.pdf},
    isbn = {160560352X}
}

@inproceedings{frogner2015learning,
    title = {{Learning with a Wasserstein loss}},
    year = {2015},
    booktitle = {Advances in Neural Information Processing Systems},
    author = {Frogner, Charlie and Zhang, Chiyuan and Mobahi, Hossein and Araya, Mauricio and Poggio, Tomaso A},
    pages = {2053--2061}
}

@inproceedings{Yang2017a,
    title = {{Lesion detection and grading of diabetic retinopathy via two-stages deep convolutional neural networks}},
    year = {2017},
    booktitle = {Medical Image Computing and Computer Assisted Intervention},
    author = {Yang, Yehui and Li, Tao and Li, Wensi and Wu, Haishan and Fan, Wei and Zhang, Wensheng},
    volume = {10435 LNCS},
    isbn = {9783319661780},
    doi = {10.1007/978-3-319-66179-7{\_}61},
    issn = {16113349},
    arxivId = {1705.00771v1},
    keywords = {Deep convolutional neural networks, Diabetic retinopathy, Fundus images, Retinopathy lesions}
}

@techreport{Romanov,
    title = {{Lessons from Natural Language Inference in the Clinical Domain}},
    author = {Romanov, Alexey and Shivade, Chaitanya},
    url = {https://jgc128.github.io/mednli/},
    arxivId = {arXiv:1808.06752v2}
}

@misc{Knuth2003a,
    title = {{Letter to Editorial Board, Journal of Algorithms}},
    year = {2003},
    author = {Knuth, Donald},
    month = {10},
    url = {http://www-cs-faculty.stanford.edu/~uno/joalet.pdf}
}

@inproceedings{Gangeh2018,
    title = {{Localization and classification of cell nuclei in post-neoadjuvant breast cancer surgical specimen using fully convolutional networks}},
    year = {2018},
    booktitle = {Medical Imaging 2018: Digital Pathology},
    author = {Gangeh, Mehrdad J. and Bidart, Rene and Peikari, Mohammad and Martel, Anne L. and Ghodsi, Ali and Salama, Sherine and Nofech-Mozes, Sharon},
    editor = {Gurcan, Metin N. and Tomaszewski, John E.},
    month = {3},
    pages = {23},
    volume = {10581},
    publisher = {SPIE},
    isbn = {9781510616516},
    doi = {10.1117/12.2292815},
    keywords = {breast cancer, cell nuclei classification, convolutional neural networks, heatmaps, localization, non-maximum supression, pathology, whole slide imaging}
}

@inproceedings{Narayanan2011,
    title = {{Location privacy via private proximity testing}},
    year = {2011},
    author = {Narayanan, A. and Thiagarajan, N. and Lakhani, M. and Hamburg, M. and Boneh, D.},
    volume = {2011},
    url = {http://infosec.pku.edu.cn/~p2p/slides/%5Bndss2011%5DLocation Privacy via PrivateProximity Testing.pdf}
}

@article{hochreiter1997long,
    title = {{Long Short-Term Memory}},
    year = {1997},
    journal = {Neural Computation},
    author = {Hochreiter, Sepp and Schmidhuber, Jürgen},
    number = {8},
    pages = {1735--1780},
    volume = {9},
    url = {http://www.mitpressjournals.org/doi/10.1162/neco.1997.9.8.1735},
    doi = {10.1162/neco.1997.9.8.1735},
    issn = {0899-7667}
}

@article{Yang2017,
    title = {{Low Dose CT Image Denoising Using a Generative Adversarial Network with Wasserstein Distance and Perceptual Loss}},
    year = {2017},
    author = {Yang, Qingsong and Yan, Pingkun and Zhang, Yanbo and Yu, Hengyong and Shi, Yongyi and Mou, Xuanqin and Kalra, Mannudeep K. and Wang, Ge},
    month = {8},
    url = {http://arxiv.org/abs/1708.00961},
    arxivId = {1708.00961}
}

@article{Salamuniccar2012,
    title = {{LU60645GT and MA132843GT catalogues of Lunar and Martian impact craters developed using a Crater Shape-based interpolation crater detection algorithm for topography data}},
    shorttitle = {Titan Through Time: A Workshop on Titan’s Formatio},
    year = {2012},
    journal = {Planetary and Space Science},
    author = {Salamuni{\'{c}}car, Goran and Lon{\v{c}}ari{\'{c}}, Sven and Mazarico, Erwan},
    number = {1},
    month = {1},
    pages = {236--247},
    volume = {60},
    url = {http://www.sciencedirect.com/science/article/pii/S0032063311002789 http://www.sciencedirect.com/science/article/pii/S0032063311002789#},
    doi = {10.1016/j.pss.2011.09.003},
    issn = {0032-0633}
}

@article{10.4329/wjr.v7.i8.189,
    title = {{Lung cancer screening: Computed tomography or chest radiographs?}},
    year = {2015},
    journal = {World Journal of Radiology},
    author = {Beek, Edwin JR van},
    number = {8},
    pages = {189},
    volume = {7},
    publisher = {Baishideng Publishing Group Inc.},
    doi = {10.4329/wjr.v7.i8.189},
    issn = {1949-8470}
}

@misc{10.21037/atm.2017.07.20,
    title = {{Lung imaging: How to get better look inside the lung}},
    year = {2017},
    booktitle = {Annals of Translational Medicine},
    author = {Ball, Lorenzo and Vercesi, Veronica and Costantino, Federico and Chandrapatham, Karthikka and Pelosi, Paolo},
    number = {14},
    month = {7},
    volume = {5},
    publisher = {AME Publishing Company},
    doi = {10.21037/atm.2017.07.20},
    issn = {23055847},
    keywords = {Acute respiratory distress syndrome (ARDS), Chest X-ray (CXR), Computed tomography (CT), Electrical impedance tomography (EIT), Lung ultrasound (LUS), Magnetic resonance imaging (MRI), Positron emission tomography (PET)}
}

@article{Hedlund1983,
    title = {{Lung scan interpretation: Effect of different observers and different criteria}},
    year = {1983},
    journal = {Radiology},
    author = {Hedlund, D C Sullivan and R E Coleman and S R Mills and C E Ravin and L W},
    doi = {10.1148/radiology.149.3.6227932},
    issn = {00338419}
}

@article{Selvan2020lungVAE,
    title = {{Lung Segmentation from Chest X-rays using Variational Data Imputation}},
    year = {2020},
    author = {Selvan, Raghavendra and Dam, Erik B. and Rischel, Sofus and Sheng, Kaining and Nielsen, Mads and Pai, Akshay},
    month = {5},
    url = {http://arxiv.org/abs/2005.10052},
    arxivId = {2005.10052}
}

@article{Bue2007,
    title = {{Machine Detection of Martian Impact Craters From Digital Topography Data}},
    year = {2007},
    journal = {IEEE Transactions on Geoscience and Remote Sensing},
    author = {Bue, Brian D. and Stepinski, Tomasz F.},
    number = {1},
    month = {1},
    pages = {265--274},
    volume = {45},
    url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=4039610},
    doi = {10.1109/TGRS.2006.885402},
    issn = {0196-2892}
}

@incollection{Stepinski2012,
    title = {{Machine Learning Approaches to Detecting Impact Craters in Planetary Images}},
    year = {2012},
    author = {Stepinski, Tomasz F. and Ding, Wei and Vilalta, R.},
    pages = {146--159},
    url = {DOI: 10.4018/978-1-4666-1806-0.ch008}
}

@article{Mnih2013,
    title = {{Machine Learning for Aerial Image Labeling}},
    year = {2013},
    author = {Mnih, Volodymyr},
    url = {https://tspace.library.utoronto.ca/handle/1807/35911},
    keywords = {Thesis, machine learning, neural networks, remote sensing}
}

@article{Wang2017a,
    title = {{Machine Learning for Survival Analysis: A Survey}},
    year = {2017},
    author = {Wang, Ping and Li, Yan and Reddy, Chandan K.},
    doi = {0000001.0000001},
    arxivId = {1708.04649}
}

@article{Rajkomar2019MLinMed,
    title = {{Machine Learning in Medicine}},
    year = {2019},
    journal = {New England Journal of Medicine},
    author = {Rajkomar, Alvin and Dean, Jeffrey and Kohane, Isaac},
    number = {14},
    month = {4},
    pages = {1347--1358},
    volume = {380},
    url = {http://www.nejm.org/doi/10.1056/NEJMra1814259},
    doi = {10.1056/NEJMra1814259},
    issn = {0028-4793}
}

@article{Senanayake2019,
    title = {{Machine learning in predicting graft failure following kidney transplantation: A systematic review of published predictive models}},
    year = {2019},
    journal = {International Journal of Medical Informatics},
    author = {Senanayake, Sameera and White, Nicole and Graves, Nicholas and Healy, Helen and Baboolal, Keshwar and Kularatna, Sanjeewa},
    month = {10},
    volume = {130},
    publisher = {Elsevier Ireland Ltd},
    doi = {10.1016/j.ijmedinf.2019.103957},
    issn = {18728243},
    keywords = {Graft failure, Kidney transplant, Machine learning, Predictive models}
}

@article{Lakhani2018,
    title = {{Machine Learning in Radiology: Applications Beyond Image Interpretation}},
    year = {2018},
    journal = {Journal of the American College of Radiology},
    author = {Lakhani, Paras and Prater, Adam B. and Hutson, R. Kent and Andriole, Kathy P. and Dreyer, Keith J. and Morey, Jose and Prevedello, Luciano M. and Clark, Toshi J. and Geis, J. Raymond and Itri, Jason N. and Hawkins, C. Matthew},
    number = {2},
    month = {2},
    volume = {15},
    publisher = {Elsevier},
    url = {https://www.jacr.org/article/S1546-1440(17)31287-5/pdf},
    doi = {10.1016/J.JACR.2017.09.044},
    issn = {1546-1440},
    pmid = {29158061},
    keywords = {Artificial intelligence, deep learning, machine learning, radiology, workflows}
}

@inproceedings{Germain2015,
    title = {{MADE: Masked Autoencoder for Distribution Estimation}},
    year = {2015},
    booktitle = {International Conference on Machine Learning},
    author = {Germain, Mathieu and Gregor, Karol and Murray, Iain and Larochelle, Hugo},
    month = {2},
    url = {http://arxiv.org/abs/1502.03509},
    arxivId = {1502.03509}
}

@article{bourne2017magnitude,
    title = {{Magnitude, temporal trends, and projections of the global prevalence of blindness and distance and near vision impairment: a systematic review and meta-analysis}},
    year = {2017},
    journal = {The Lancet Global Health},
    author = {Bourne, Rupert R A and Flaxman, Seth R and Braithwaite, Tasanee and Cicinelli, Maria V and Das, Aditi and Jonas, Jost B and Keeffe, Jill and Kempen, John H and Leasher, Janet and Limburg, Hans and {others}},
    number = {9},
    pages = {e888--e897},
    volume = {5},
    publisher = {Elsevier}
}

@article{Cao2007,
    title = {{Man-made object detection in aerial images using multi-stage level set evolution}},
    year = {2007},
    journal = {International Journal of Remote Sensing},
    author = {Cao, G. and Yang, X.},
    number = {8},
    month = {4},
    pages = {1747--1757},
    volume = {28},
    url = {http://ezproxy.lib.umb.edu/login?url=http://search.ebscohost.com/login.aspx?direct=true&db=a9h&AN=25727149&site=ehost-live http://content.ebscohost.com/ContentServer.asp?T=P&P=AN&K=25727149&S=R&D=a9h&EbscoContent=dGJyMMvl7ESep7E4yNfsOLCmr0yep7NSr6q4SbSWxW},
    doi = {10.1080/01431160600962764},
    issn = {01431161}
}

@inproceedings{Kumar2003,
    title = {{Man-made structure detection in natural images using a causal multiscale random field}},
    year = {2003},
    author = {Kumar, Sanjiv and Hebert, Martial},
    pages = {I–119},
    volume = {1},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1211345 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1211345&abstractAccess=no&userType=inst http://repository.cmu.edu/cgi/viewcontent.cgi?article=1435&context=robotics}
}

@article{Parmar2013,
    title = {{Management of acute and post-operative pain in chronic kidney disease}},
    year = {2013},
    journal = {F1000Research},
    author = {Parmar, Malvinder S and Parmar, Kamalpreet S},
    month = {4},
    url = {http://f1000research.com/articles/2-28/v3},
    doi = {10.12688/f1000research.2-28.v3},
    issn = {2046-1402}
}

@techreport{Chun-WingLAU2004,
    title = {{Management of Critically Ill Patients with Severe Acute Respiratory Syndrome (SARS) Review Corresponding address}},
    year = {2004},
    booktitle = {International Journal of Medical Sciences},
    author = {Chun-Wing LAU, Arthur and Yin-Chun YAM, Loretta and Kit-Ying, Loletta SO and Lau, Arthur},
    number = {1},
    pages = {1--10},
    volume = {1}
}

@inproceedings{Cohen2014a,
    title = {{Mars and Beyond: Human Spaceflight at the Museum of Science Boston}},
    year = {2014},
    author = {Cohen, Joseph Paul JP and Sable, Julia and Ding, Wei and Li, Ron and Stepinski, Tomasz F},
    pages = {1643},
    volume = {45},
    url = {http://www.hou.usra.edu/meetings/lpsc2014/pdf/1643.pdf}
}

@inproceedings{Cohen2012a,
    title = {{Mars Weekend: A Panel and Games at the Museum of Science Boston}},
    year = {2012},
    author = {Cohen, Joseph Paul and Ding, Wei and Sable, Julia and Li, Ron and Stepinski, Tomasz F.},
    month = {3},
    url = {http://www.lpi.usra.edu/meetings/lpsc2013/pdf/1367.pdf}
}

@misc{_mars_,
    title = {{Mars {\{}Global{\}} {\{}Data{\}} {\{}Sets{\}}: {\{}THEMIS{\}} {\{}Day{\}} {\{}IR{\}} {\{}Global{\}} {\{}Mosaic{\}}}},
    url = {http://www.mars.asu.edu/data/thm_dir/}
}

@article{He2017a,
    title = {{Mask R-CNN}},
    year = {2017},
    author = {He, Kaiming and Gkioxari, Georgia and Doll{\'{a}}r, Piotr and Girshick, Ross},
    month = {3},
    url = {http://arxiv.org/abs/1703.06870},
    arxivId = {1703.06870}
}

@inproceedings{hu2017maskrnn,
    title = {{Maskrnn: Instance level video object segmentation}},
    year = {2017},
    booktitle = {Advances in Neural Information Processing Systems},
    author = {Hu, Yuan-Ting and Huang, Jia-Bin and Schwing, Alexander},
    pages = {325--334}
}

@article{Erman2010,
    title = {{Measuring and modeling the BitTorrent content distribution system}},
    year = {2010},
    journal = {Computer Communications},
    author = {Erman, David and Ilie, Dragos and Popescu, Adrian},
    month = {11},
    series = {Special Issue: Heterogeneous Networks: Traffic Engineering and Performance Evaluation},
    url = {http://www.sciencedirect.com/science/article/pii/S0140366410002148 http://www.sciencedirect.com/science/article/pii/S0140366410002148/pdfft?md5=6740250fdcd30bf717ec242a06c79387&pid=1-s2.0-S0140366410002148-main.pdf},
    doi = {10.1016/j.comcom.2010.04.036},
    issn = {0140-3664}
}

@article{Jo2017,
    title = {{Measuring the tendency of CNNs to Learn Surface Statistical Regularities}},
    year = {2017},
    journal = {arXiv},
    author = {Jo, Jason and Bengio, Yoshua},
    month = {11},
    url = {http://arxiv.org/abs/1711.11561},
    arxivId = {1711.11561}
}

@techreport{Tobin2017MechanicalVentilation,
    title = {{Mechanical Ventilation}},
    year = {2017},
    author = {Tobin, Martin and Manthous, Constantine},
    url = {http://www.caregiver.org},
    institution = {American Thoracic Society}
}

@article{Abebe2018,
    title = {{Mechanism Design for Social Good}},
    year = {2018},
    author = {Abebe, Rediet and Goldner, Kira},
    month = {10},
    url = {http://arxiv.org/abs/1810.09832 http://dx.doi.org/10.1145/3284751.328476},
    doi = {10.1145/3284751.328476},
    arxivId = {1810.09832}
}

@article{Chen2019a,
    title = {{Med3D: Transfer Learning for 3D Medical Image Analysis}},
    year = {2019},
    author = {Chen, Sihong and Ma, Kai and Zheng, Yefeng},
    month = {4},
    url = {http://arxiv.org/abs/1904.00625},
    arxivId = {1904.00625}
}

@article{Lee2017medicaldata,
    title = {{Medical big data: Promise and challenges}},
    year = {2017},
    journal = {Kidney Research and Clinical Practice},
    author = {Lee, Choong Ho and Yoon, Hyung Jin},
    number = {1},
    month = {3},
    pages = {3--11},
    volume = {36},
    publisher = {The Korean Society of Nephrology},
    doi = {10.23876/j.krcp.2017.36.1.3},
    issn = {22119140},
    keywords = {Big data, Data mining, Epidemiology, Healthcare, Statistics}
}

@inproceedings{Nie2016,
    title = {{Medical Image Synthesis with Context-Aware Generative Adversarial Networks}},
    year = {2016},
    booktitle = {Medical Image Computing and Computer-Assisted Intervention},
    author = {Nie, Dong and Trullo, Roger and Petitjean, Caroline and Ruan, Su and Shen, Dinggang},
    url = {http://arxiv.org/abs/1612.05362},
    isbn = {1406.2661},
    doi = {10.1007/978-3-319-66179-7{\_}48},
    issn = {10495258},
    arxivId = {1612.05362},
    keywords = {auto-, deep learning, gan, generative models, image synthesis}
}

@misc{Couzin-Frankel2019medicalcontends,
    title = {{Medicine contends with how to use artificial intelligence}},
    year = {2019},
    booktitle = {Science},
    author = {Couzin-Frankel, Jennifer},
    number = {6446},
    month = {6},
    pages = {1119--1120},
    volume = {364},
    publisher = {American Association for the Advancement of Science},
    url = {https://science.sciencemag.org/content/364/6446/1119 https://science.sciencemag.org/content/364/6446/1119.abstract},
    doi = {10.1126/science.364.6446.1119},
    issn = {10959203},
    pmid = {31221837}
}

@techreport{Triantafillou2018,
    title = {{Meta-Dataset: A Dataset of Datasets for Learning to Learn from Few Examples}},
    year = {2018},
    author = {Triantafillou, Eleni and Zhu, Tyler and Dumoulin, Vincent and Lamblin, Pascal and Xu, Kelvin and Goroshin, Ross and Gelada, Carles and Swersky, Kevin and Manzagol, Pierre-Antoine and Google, Hugo Larochelle},
    url = {https://sites.google.com/view/fgvc5/competitions/fgvcx/fungi}
}

@misc{Hough,
    title = {{Method and means for recognizing complex patterns}},
    author = {Hough, P. V. C.},
    address = {Washington, DC}
}

@misc{glass2006method1,
    title = {{Method and system for detection of cardiac arrhythmia}},
    year = {2006},
    author = {Glass, Leon and Tateno, Katsumi},
    publisher = {Google Patents}
}

@article{Salamuniccar2010,
    title = {{Method for crater detection from Martian digital topography data using gradient value/orientation, morphometry, vote analysis, slip tuning, and calibration}},
    year = {2010},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Salamuniccar, Goran and Loncaric, Sven},
    number = {5},
    pages = {2317–2329},
    volume = {48},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5404398 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=5404398&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D5404398}
}

@inproceedings{Irvin1989,
    title = {{Methods for exploiting the relationship between buildings and their shadows in aerial imagery}},
    year = {1989},
    author = {Irvin, R. Bruce and McKeown, David M.},
    pages = {156--164},
    url = {http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=1257348 http://repository.cmu.edu/cgi/viewcontent.cgi?article=2806&context=compsci}
}

@misc{Jones2006,
    title = {{Methods for high-content, high-throughput image-based cell screening.}},
    year = {2006},
    author = {Jones, T R and Carpenter, A E and Sabatini, D M and Golland, P},
    editor = {Metaxas, D N and Whitaker, R T and Rittcher, J and Sebastian, T}
}

@article{Bailey2006,
    title = {{Microarrays of lentiviruses for gene function screens in immortalized and primary cells.}},
    year = {2006},
    journal = {Nat Methods},
    author = {Bailey, S N and Ali, S M and Carpenter, A E and Higgins, C O and Sabatini, D M},
    volume = {3},
    url = {http://dx.doi.org/10.1038/nmeth848},
    doi = {10.1038/nmeth848}
}

@article{Xie2016,
    title = {{Microscopy cell counting and detection with fully convolutional regression networks}},
    year = {2016},
    journal = {Computer Methods in Biomechanics and Biomedical Engineering: Imaging {\&} Visualization},
    author = {Xie, Weidi and Noble, J. Alison and Zisserman, Andrew},
    doi = {10.1080/21681163.2016.1149104},
    issn = {2168-1163},
    keywords = {Microscopy image analysis, cell counting, cell detection, fully convolutional regression networks, inverting feature representations}
}

@inproceedings{lin2014microsoft,
    title = {{Microsoft coco: Common objects in context}},
    year = {2014},
    booktitle = {European conference on computer vision},
    author = {Lin, Tsung-Yi and Maire, Michael and Belongie, Serge and Hays, James and Perona, Pietro and Ramanan, Deva and Doll{\'{a}}r, Piotr and Zitnick, C Lawrence},
    pages = {740--755},
    organization = {Springer}
}

@article{Johnson2019mimic-cxr,
    title = {{MIMIC-CXR: A large publicly available database of labeled chest radiographs}},
    year = {2019},
    journal = {Nature Scientific Data},
    author = {Johnson, Alistair E. W. and Pollard, Tom J. and Berkowitz, Seth J. and Greenbaum, Nathaniel R. and Lungren, Matthew P. and Deng, Chih-ying and Mark, Roger G. and Horng, Steven},
    url = {http://arxiv.org/abs/1901.07042},
    doi = {10.1038/s41597-019-0322-0},
    arxivId = {1901.07042}
}

@article{Johnson2016,
    title = {{MIMIC-III, a freely accessible critical care database}},
    year = {2016},
    journal = {Scientific Data},
    author = {Johnson, Alistair E.W. and Pollard, Tom J. and Shen, Lu and Lehman, Li-wei H. and Feng, Mengling and Ghassemi, Mohammad and Moody, Benjamin and Szolovits, Peter and Anthony Celi, Leo and Mark, Roger G.},
    url = {http://www.nature.com/articles/sdata201635},
    doi = {10.1038/sdata.2016.35},
    issn = {2052-4463}
}

@article{Gaube2021DoDecision-aids,
    title = {{Do as AI say: susceptibility in deployment of clinical decision-aids}},
    year = {2021},
    journal = {npj Digital Medicine 2021 4:1},
    author = {Gaube, Susanne and Suresh, Harini and Raue, Martina and Merritt, Alexander and Berkowitz, Seth J. and Lermer, Eva and Coughlin, Joseph F. and Guttag, John V. and Colak, Errol and Ghassemi, Marzyeh},
    number = {1},
    month = {2},
    pages = {1--8},
    volume = {4},
    publisher = {Nature Publishing Group},
    url = {https://www.nature.com/articles/s41746-021-00385-9},
    doi = {10.1038/s41746-021-00385-9},
    issn = {2398-6352},
    keywords = {Decision making, Human behaviour, Radiography}
}
@inproceedings{Hong2019,
    title = {{MINA: Multilevel Knowledge-Guided Attention for Modeling Electrocardiography Signals}},
    year = {2019},
    author = {Hong, Shenda and Xiao, Cao and Ma, Tengfei and Li, Hongyan and Sun, Jimeng},
    url = {https://arxiv.org/abs/1905.11333},
    doi = {10.24963/ijcai.2019/816},
    arxivId = {1905.11333v2}
}

@inproceedings{Liu2003,
    title = {{Mining data records in Web pages}},
    year = {2003},
    author = {Liu, B. and Grossman, R. and Zhai, Y.},
    pages = {601–606},
    url = {http://dl.acm.org/citation.cfm?id=956826}
}

@inproceedings{liu_mining_2003,
    title = {{Mining data records in Web pages}},
    year = {2003},
    booktitle = {Proceedings of the ninth {\{}ACM{\}} {\{}SIGKDD{\}} international conference on Knowledge discovery and data mining},
    author = {Liu, B and Grossman, R and Zhai, Y}
}

@article{Honda2002,
    title = {{Mining of topographic feature from heterogeneous imagery and its application to lunar craters}},
    year = {2002},
    journal = {Progress in Discovery Science},
    author = {Honda, R. and Iijima, Y. and Konishi, O.},
    pages = {27--44}
}

@article{Cirean,
    title = {{Mitosis Detection in Breast Cancer Histology Images with Deep Neural Networks}},
    author = {Cirean, Dan C and Giusti, Alessandro and Gambardella, Luca M and Schmidhuber, Jürgen}
}

@techreport{Berthelot,
    title = {{MixMatch: A Holistic Approach to Semi-Supervised Learning}},
    author = {Berthelot, David and Research, Google and Carlini, Nicholas and Goodfellow, Ian and Oliver, Avital and Papernot, Nicolas and Raffel, Colin},
    url = {https://github.com/google-research/mixmatch},
    isbn = {1905.02249v2},
    arxivId = {1905.02249v2}
}

@misc{mnist1998,
    title = {{MNIST handwritten digit database}},
    year = {1998},
    author = {LeCun, Yann and Cortes, Corinna},
    url = {http://yann.lecun.com/exdb/mnist/},
    howpublished = {http://yann.lecun.com/exdb/mnist/}
}

@article{howard2017mobilenets,
    title = {{Mobilenets: Efficient convolutional neural networks for mobile vision applications}},
    year = {2017},
    journal = {arXiv preprint arXiv:1704.04861},
    author = {Howard, Andrew G and Zhu, Menglong and Chen, Bo and Kalenichenko, Dmitry and Wang, Weijun and Weyand, Tobias and Andreetto, Marco and Adam, Hartwig}
}

@inproceedings{sandler2018mobilenetv2,
    title = {{MobileNetV2: Inverted Residuals and Linear Bottlenecks}},
    year = {2018},
    booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition},
    author = {Sandler, Mark and Howard, Andrew and Zhu, Menglong and Zhmoginov, Andrey and Chen, Liang-Chieh},
    pages = {4510--4520}
}

@article{Mitchell2018,
    title = {{Model Cards for Model Reporting}},
    year = {2018},
    journal = {FAT* 2019 - Proceedings of the 2019 Conference on Fairness, Accountability, and Transparency},
    author = {Mitchell, Margaret and Wu, Simone and Zaldivar, Andrew and Barnes, Parker and Vasserman, Lucy and Hutchinson, Ben and Spitzer, Elena and Raji, Inioluwa Deborah and Gebru, Timnit},
    month = {10},
    pages = {220--229},
    publisher = {Association for Computing Machinery, Inc},
    url = {http://arxiv.org/abs/1810.03993 http://dx.doi.org/10.1145/3287560.3287596},
    doi = {10.1145/3287560.3287596},
    arxivId = {1810.03993},
    keywords = {Datasheets, Disaggregated evaluation, Documentation, Ethical considerations, Fairness evaluation, ML model evaluation, Model cards}
}

@inproceedings{bucilua2006model,
    title = {{Model compression}},
    year = {2006},
    booktitle = {Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining},
    author = {Buciluǎ, Cristian and Caruana, Rich and Niculescu-Mizil, Alexandru},
    pages = {535--541},
    organization = {ACM}
}

@inproceedings{Finn,
    title = {{Model-agnostic meta-learning for fast adaptation of deep networks}},
    year = {2017},
    booktitle = {International Conference on Machine Learning},
    author = {Finn, Chelsea and Abbeel, Pieter and Levine, Sergey},
    volume = {3},
    url = {https://arxiv.org/pdf/1703.03400.pdf},
    isbn = {9781510855144}
}

@article{Mao2017a,
    title = {{Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks}},
    year = {2017},
    journal = {bioRxiv},
    author = {Mao, Weiguang and Kostka, Dennis and Chikina, Maria},
    month = {11},
    pages = {219667},
    publisher = {Cold Spring Harbor Laboratory},
    url = {https://www.biorxiv.org/content/early/2017/11/14/219667},
    doi = {10.1101/219667}
}

@article{Mao2017,
    title = {{Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks}},
    year = {2017},
    journal = {bioRxiv},
    author = {Mao, Weiguang and Kostka, Dennis and Chikina, Maria},
    month = {11},
    pages = {219667},
    publisher = {Cold Spring Harbor Laboratory},
    url = {https://www.biorxiv.org/content/early/2017/11/14/219667},
    doi = {10.1101/219667}
}

@article{Zhou2019,
    title = {{Models Genesis: Generic Autodidactic Models for 3D Medical Image Analysis}},
    year = {2019},
    author = {Zhou, Zongwei and Sodha, Vatsal and Siddiquee, Md Mahfuzur Rahman and Feng, Ruibin and Tajbakhsh, Nima and Gotway, Michael B. and Liang, Jianming},
    month = {8},
    url = {http://arxiv.org/abs/1908.06912},
    arxivId = {1908.06912}
}

@article{Zhou2019a,
    title = {{Models Genesis: Generic Autodidactic Models for 3D Medical Image Analysis}},
    year = {2019},
    author = {Zhou, Zongwei and Sodha, Vatsal and Siddiquee, Md Mahfuzur Rahman and Feng, Ruibin and Tajbakhsh, Nima and Gotway, Michael B. and Liang, Jianming},
    month = {8},
    url = {http://arxiv.org/abs/1908.06912},
    arxivId = {1908.06912}
}

@article{Chen2019b,
    title = {{Modular Meta-Learning with Shrinkage}},
    year = {2019},
    author = {Chen, Yutian and Friesen, Abram L. and Behbahani, Feryal and Budden, David and Hoffman, Matthew W. and Doucet, Arnaud and de Freitas, Nando},
    month = {9},
    url = {http://arxiv.org/abs/1909.05557},
    arxivId = {1909.05557}
}

@article{Jaeger2018,
    title = {{Mol2vec: Unsupervised Machine Learning Approach with Chemical Intuition}},
    year = {2018},
    journal = {Journal of Chemical Information and Modeling},
    author = {Jaeger, Sabrina and Fulle, Simone and Turk, Samo},
    number = {1},
    month = {1},
    pages = {27--35},
    volume = {58},
    publisher = {American Chemical Society},
    url = {http://pubs.acs.org/doi/10.1021/acs.jcim.7b00616},
    doi = {10.1021/acs.jcim.7b00616},
    issn = {1549-9596}
}

@article{Kearnes2016,
    title = {{Molecular graph convolutions: moving beyond fingerprints}},
    year = {2016},
    journal = {Journal of Computer-Aided Molecular Design},
    author = {Kearnes, Steven and McCloskey, Kevin and Berndl, Marc and Pande, Vijay and Riley, Patrick},
    url = {https://arxiv.org/pdf/1603.00856.pdf},
    doi = {10.1007/s10822-016-9938-8},
    issn = {15734951},
    pmid = {27558503},
    arxivId = {1603.00856},
    keywords = {Artificial neural networks, Deep learning, Machine learning, Molecular descriptors, Virtual screening}
}

@article{Wu2017,
    title = {{MoleculeNet: A Benchmark for Molecular Machine Learning}},
    year = {2017},
    author = {Wu, Zhenqin and Ramsundar, Bharath and Feinberg, Evan N. and Gomes, Joseph and Geniesse, Caleb and Pappu, Aneesh S. and Leswing, Karl and Pande, Vijay},
    month = {3},
    url = {http://arxiv.org/abs/1703.00564},
    arxivId = {1703.00564}
}

@article{He2019,
    title = {{Momentum Contrast for Unsupervised Visual Representation Learning}},
    year = {2019},
    author = {He, Kaiming and Fan, Haoqi and Wu, Yuxin and Xie, Saining and Girshick, Ross},
    month = {11},
    url = {http://arxiv.org/abs/1911.05722},
    arxivId = {1911.05722}
}

@article{Meyer1990,
    title = {{Morphological segmentation.}},
    year = {1990},
    journal = {J Visual Communication Image Representation},
    author = {Meyer, F and Beucher, S},
    volume = {1},
    url = {http://dx.doi.org/10.1016/1047-3203(90)90014-M},
    doi = {10.1016/1047-3203(90)90014-M}
}

@misc{Supurovic1998,
    title = {{MPEG Audio Compression Basics}},
    year = {1998},
    author = {Supurovic, Predrag},
    url = {mpgedit.org http://mpgedit.org/mpgedit/mpeg_format/mpeghdr.htm}
}

@techreport{Yanga,
    title = {{Multi-Domain Translation by Learning Uncoupled Autoencoders}},
    author = {Yang, Karren D and Uhler, Caroline},
    url = {https://arxiv.org/pdf/1902.03515.pdf},
    isbn = {1902.03515v1},
    arxivId = {1902.03515v1}
}

@article{Baumel2017,
    title = {{Multi-Label Classification of Patient Notes a Case Study on ICD Code Assignment}},
    year = {2017},
    author = {Baumel, Tal and Nassour-Kassis, Jumana and Cohen, Raphael and Elhadad, Michael and Elhadad, No`emie},
    month = {9},
    url = {http://arxiv.org/abs/1709.09587},
    arxivId = {1709.09587}
}

@article{Choi2016,
    title = {{Multi-layer Representation Learning for Medical Concepts}},
    year = {2016},
    author = {Choi, Edward and Bahadori, Mohammad Taha and Searles, Elizabeth and Coffey, Catherine and Sun, Jimeng},
    url = {https://arxiv.org/pdf/1602.05568.pdf http://arxiv.org/abs/1602.05568},
    isbn = {9781450342322},
    doi = {10.1145/2939672.2939823},
    issn = {10450823},
    arxivId = {1602.05568}
}

@article{Yu2016,
    title = {{Multi-Scale Context Aggregation by Dilated Convolutions}},
    year = {2016},
    journal = {International Conference on Learning Representations},
    author = {Yu, Fisher and Koltun, Vladlen},
    url = {https://arxiv.org/pdf/1511.07122.pdf http://arxiv.org/abs/1511.07122},
    isbn = {0894-0282},
    doi = {10.16373/j.cnki.ahr.150049},
    issn = {00237205},
    pmid = {22352717},
    arxivId = {1511.07122}
}

@inproceedings{Chaichulee2017,
    title = {{Multi-Task Convolutional Neural Network for Patient Detection and Skin Segmentation in Continuous Non-Contact Vital Sign Monitoring}},
    year = {2017},
    booktitle = {2017 12th IEEE International Conference on Automatic Face {\&} Gesture Recognition (FG 2017)},
    author = {Chaichulee, Sitthichok and Villarroel, Mauricio and Jorge, Joao and Arteta, Carlos and Green, Gabrielle and McCormick, Kenny and Zisserman, Andrew and Tarassenko, Lionel},
    month = {5},
    pages = {266--272},
    publisher = {IEEE},
    url = {http://ieeexplore.ieee.org/document/7961751/},
    isbn = {978-1-5090-4023-0},
    doi = {10.1109/FG.2017.41}
}

@article{Malhotra2020,
    title = {{Multi-Task Driven Explainable Diagnosis of COVID-19 using Chest X-ray Images}},
    year = {2020},
    author = {Malhotra, Aakarsh and Mittal, Surbhi and Majumdar, Puspita and Chhabra, Saheb and Thakral, Kartik and Vatsa, Mayank and Singh, Richa and Chaudhury, Santanu and Pudrod, Ashwin and Agrawal, Anjali},
    month = {8},
    url = {http://arxiv.org/abs/2008.03205},
    arxivId = {2008.03205},
    keywords = {COVID-19, Deep Learning, Detection, Diagnostics, Explainable Artificial Intelligence, Index Terms-X-ray, Multi-task Learning}
}

@techreport{Augenstein,
    title = {{Multi-task Learning of Pairwise Sequence Classification Tasks Over Disparate Label Spaces}},
    author = {Augenstein, Isabelle and Ruder, Sebastian and S{\o}gaard, Anders},
    url = {https://arxiv.org/pdf/1802.09913.pdf},
    arxivId = {1802.09913v2}
}

@article{Kendall2017,
    title = {{Multi-Task Learning Using Uncertainty to Weigh Losses for Scene Geometry and Semantics}},
    year = {2017},
    author = {Kendall, Alex and Gal, Yarin and Cipolla, Roberto},
    month = {5},
    url = {http://arxiv.org/abs/1705.07115},
    arxivId = {1705.07115}
}

@techreport{Suo,
    title = {{Multi-Task Sparse Metric Learning for Monitoring Patient Similarity Progression}},
    author = {Suo, Qiuling and Zhong, Weida and Ma, Fenglong and Yuan, Ye and Huai, Mengdi and Zhang, Aidong},
    keywords = {Index Terms-Metric Learning, Multi-task Learning, Patient Similarity, Sparse Regularization}
}

@inproceedings{TrentKyono2019,
    title = {{Multi-view Multi-task Learning for Improving Autonomous Mammogram Diagnosis}},
    year = {2019},
    booktitle = {Machine Learning for Healthcare},
    author = {{Trent Kyono} and {Fiona J. Gilbert} and {Mihaela van der Schaar}},
    url = {http://www.vanderschaar-lab.com/papers/ML4HC19_MVMT.pdf}
}

@article{Perlman2004,
    title = {{Multidimensional drug profiling by automated microscopy.}},
    year = {2004},
    journal = {Science},
    author = {Perlman, Z E and Slack, M D and Feng, Y and Mitchison, T J and Wu, L F and Altschuler, S J},
    volume = {306},
    url = {http://dx.doi.org/10.1126/science.1100709},
    doi = {10.1126/science.1100709}
}

@article{Ferng2007,
    title = {{Multilabel classification using error-correcting codes of hard or soft bits.}},
    year = {2013},
    journal = {IEEE transactions on neural networks and learning systems},
    author = {Ferng, Chun-Sung and Lin, Hsuan-Tien},
    url = {http://ieeexplore.ieee.org/articleDetails.jsp?arnumber=6553201},
    doi = {10.1109/TNNLS.2013.2269615},
    issn = {2162-2388},
    pmid = {24808620},
    keywords = {ECC-based explanation, Error-correcting codes (ECCs), RAKEL algorithm, base learning tasks, binary bits, binary codes, binary relevance approach, decoder, decoding, error correction codes, error-correcting codes, hard bits, multilabel classification, multilabel classification problems, noisy channels, off-the-shelf ECC designs, parity check codes, parity-checking labels, pattern classification, prediction errors, prediction theory, random k-label set algorithm, real-valued bits, set theory, soft bits}
}

@article{Ngiam2011,
    title = {{Multimodal Deep Learning}},
    year = {2011},
    author = {Ngiam, Jiquan and Khosla, Aditya and Kim, Mingyu and Nam, Juhan and Lee, Honglak and Ng, Andrew Y},
    url = {https://people.csail.mit.edu/khosla/papers/icml2011_ngiam.pdf}
}

@inproceedings{Shanmugam2018,
    title = {{Multiple Instance Learning for ECG Risk Stratification}},
    year = {2018},
    booktitle = {Machine Learning for Healthcare Conference},
    author = {Shanmugam, Divya and Blalock, Davis and Guttag, John},
    month = {12},
    url = {http://arxiv.org/abs/1812.00475},
    arxivId = {1812.00475}
}

@article{Ba2015,
    title = {{Multiple Object Recognition With Visual Attention}},
    year = {2015},
    journal = {International Conference on Learning Representations},
    author = {Ba, Jimmy Lei and Mnih, Volodymyr and Kavukcuoglu, Koray},
    url = {https://arxiv.org/pdf/1412.7755.pdf},
    isbn = {9781424465163},
    arxivId = {arXiv:1412.7755v2}
}

@article{PMID26615024,
    title = {{Multiple sequence alignment modeling: methods and applications}},
    year = {2016},
    journal = {Briefings in Bioinformatics},
    author = {Chatzou, Maria and Magis, Cedrik and Chang, Jia-Ming and Kemena, Carsten and Bussotti, Giovanni and Erb, Ionas and Notredame, Cedric},
    number = {6},
    month = {11},
    pages = {1009--1023},
    volume = {17},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/26615024 https://academic.oup.com/bib/article/2606431/Multiple},
    doi = {10.1093/bib/bbv099},
    issn = {1467-5463},
    pmid = {26615024},
    keywords = {DNA alignments, RNA alignments, alignment benchmarks, alignment reliability measures, multiple sequence alignments, protein alignments}
}

@article{Taylor2005,
    title = {{Multiplexed high content screening assays create a systems cell biology approach to drug discovery.}},
    year = {2005},
    journal = {Drug Discov Today: Technologies},
    author = {Taylor, D L and Giuliano, K A},
    volume = {2},
    url = {http://dx.doi.org/10.1016/j.ddtec.2005.05.023},
    doi = {10.1016/j.ddtec.2005.05.023}
}

@article{Ravkin2004,
    title = {{Multiplexed high-throughput image cytometry using encoded carriers.}},
    year = {2004},
    journal = {Proc SPIE},
    author = {Ravkin, Ilya and Temov, Vladimir and Nelson, Aaron D. and Zarowitz, Michael A. and Hoopes, Matthew and Verhovsky, Yuli and Ascue, Gregory and Goldbard, Simon and Beske, Oren and Bhagwat, Bhagyashree and Marciniak, Holly and Sabatini, David M},
    editor = {Nicolau, Dan V. and Enderlein, Joerg and Leif, Robert C. and Farkas, Daniel L.},
    number = {Suppl},
    month = {7},
    pages = {52},
    volume = {5322},
    publisher = {BioMed Central},
    url = {http://proceedings.spiedigitallibrary.org/proceeding.aspx?doi=10.1117/12.528071 http://dx.doi.org/10.1117/12.528071},
    doi = {10.1117/12.528071},
    issn = {1474-760X},
    keywords = {Animal Genetics and Genomics, Bioinformatics, Evolutionary Biology, Human Genetics, Microbial Genetics and Genomics, Plant Genetics {\&} Genomics}
}

@article{Allenbach2020ICUTransfer,
    title = {{Multivariable prediction model of intensive care unit transfer and death: a French prospective cohort study of COVID-19 patients.}},
    year = {2020},
    journal = {medRxiv},
    author = {Allenbach, Yves and Saadoun, David and Maalouf, Georgina and Vieira, Matheus and Hellio, Alexandra and Boddaert, Jacques and Gros, Helene and Salem, Joe Elie and Resche-Rigon, Matthieu and Biard, Lucie and Benveniste, Olivier and Cacoub, Patrice},
    month = {5},
    pages = {2020.05.04.20090118},
    publisher = {Cold Spring Harbor Laboratory Press},
    doi = {10.1101/2020.05.04.20090118}
}

@article{Rajpurkar2018MURA,
    title = {{MURA: Large Dataset for Abnormality Detection in Musculoskeletal Radiographs}},
    year = {2018},
    journal = {arxiv},
    author = {Rajpurkar, Pranav and Irvin, Jeremy and Bagul, Aarti and Ding, Daisy and Duan, Tony and Mehta, Hershel and Yang, Brandon and Zhu, Kaylie and Laird, Dillon and Ball, Robyn L and Langlotz, Curtis and Shpanskaya, Katie and Lungren, Matthew P and Ng, Andrew Y},
    url = {http://stanfordmlgroup.github.io/competitions/mura.},
    arxivId = {1712.06957v4}
}

@article{Hassett2015,
    title = {{Mushrooms as rainmakers: How spores act as nuclei for raindrops}},
    year = {2015},
    journal = {PLoS ONE},
    author = {Hassett, Maribeth O and Fischer, Mark W F and Money, Nicholas P},
    number = {10},
    pages = {e0140407},
    volume = {10},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/26509436 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4624964},
    doi = {10.1371/journal.pone.0140407},
    issn = {19326203},
    pmid = {26509436}
}

@article{Purtell,
    title = {{Musubi: Disintermediated Interactive Social Feeds for Mobile Devices}},
    shorttitle = {Musubi},
    author = {Purtell, B. D. I. V. T. J. and Lam, A. C. M. S.},
    url = {http://mobisocial.stanford.edu/papers/musubi_disintermediated.pdf}
}

@article{PMID29297280,
    title = {{Mutation status coupled with RNA-sequencing data can efficiently identify important non-significantly mutated genes serving as diagnostic biomarkers of endometrial cancer.}},
    year = {2017},
    journal = {BMC bioinformatics},
    author = {Liu, Keqin and He, Li and Liu, Zhichao and Xu, Junmei and Liu, Yuan and Kuang, Qifan and Wen, Zhining and Li, Menglong},
    number = {Suppl 14},
    month = {12},
    pages = {472},
    volume = {18},
    publisher = {BioMed Central},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/29297280 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5751793},
    doi = {10.1186/s12859-017-1891-6},
    issn = {1471-2105},
    pmid = {29297280},
    keywords = {Clinical phenotype characteristics, Differentially expressed genes, Endometrial cancer, RNA sequencing, Somatic mutation}
}

@article{Verhaak2005,
    title = {{Mutations in nucleophosmin (NPM1) in acute myeloid leukemia (AML): Association with other gene abnormalities and previously established gene expression signatures and their favorable prognostic significance}},
    year = {2005},
    journal = {Blood},
    author = {Verhaak, Roel G. W. and Goudswaard, Chantal S. and Van Putten, Wim and Bijl, Maarten A. and Sanders, Mathijs A. and Hugens, Wendy and Uitterlinden, André G. and Erpelinck, Claudia A. J. and Delwel, Ruud and L{\"{o}}wenberg, Bob and Valk, Peter J. M.},
    url = {http://www.bloodjournal.org/content/106/12/3747.short},
    isbn = {0006-4971 (Print){\textbackslash}r0006-4971 (Linking)},
    doi = {10.1182/blood-2005-05-2168},
    issn = {00064971},
    pmid = {16109776}
}

@article{Verhaak2005a,
    title = {{Mutations in nucleophosmin (NPM1) in acute myeloid leukemia (AML): Association with other gene abnormalities and previously established gene expression signatures and their favorable prognostic significance}},
    year = {2005},
    journal = {Blood},
    author = {Verhaak, Roel G W and Goudswaard, Chantal S. and Van Putten, Wim and Bijl, Maarten A. and Sanders, Mathijs A. and Hugens, Wendy and Uitterlinden, André G. and Erpelinck, Claudia A J and Delwel, Ruud and L{\"{o}}wenberg, Bob and Valk, Peter J M},
    number = {12},
    pages = {3747--3754},
    volume = {106},
    isbn = {0006-4971 (Print){\textbackslash}r0006-4971 (Linking)},
    doi = {10.1182/blood-2005-05-2168},
    issn = {00064971},
    pmid = {16109776}
}

@article{mxnet,
    title = {{MXNet: A Flexible and Efficient Machine Learning Library for Heterogeneous Distributed Systems}},
    shorttitle = {MXNet},
    year = {2015},
    journal = {Neural Information Processing Systems, Workshop on Machine Learning Systems},
    author = {Chen, Tianqi and Li, Mu and Li, Yutian and Lin, Min and Wang, Naiyan and Wang, Minjie and Xiao, Tianjun and Xu, Bing and Zhang, Chiyuan and Zhang, Zheng},
    url = {http://arxiv.org/abs/1512.01274},
    arxivId = {1512.01274}
}

@inproceedings{Kowalkiewicz2006,
    title = {{MyPortal: Robust extraction and aggregation of web content}},
    shorttitle = {MyPortal},
    year = {2006},
    author = {Kowalkiewicz, M. and Kaczmarek, T. and Abramowicz, W.},
    pages = {1219–1222},
    url = {http://dl.acm.org/citation.cfm?id=1164248}
}

@article{Oreshkin2019NBEATS,
    title = {{N-BEATS: Neural basis expansion analysis for interpretable time series forecasting}},
    year = {2019},
    author = {Oreshkin, Boris N. and Carpov, Dmitri and Chapados, Nicolas and Bengio, Yoshua},
    month = {5},
    url = {http://arxiv.org/abs/1905.10437},
    arxivId = {1905.10437}
}

@misc{Oracle,
    title = {{NASA World Wind Java at JavaOne (Ken Russell's Weblog)}},
    author = {{oracle}},
    url = {http://blogs.oracle.com/kbr/entry/nasa_world_wind_java_at}
}

@article{Bray2016,
    title = {{Near-optimal probabilistic RNA-seq quantification}},
    year = {2016},
    journal = {Nature Biotechnology},
    author = {Bray, Nicolas L and Pimentel, Harold and Melsted, Páll and Pachter, Lior},
    number = {5},
    pages = {525--527},
    volume = {34},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/articles/nbt.3519},
    doi = {10.1038/nbt.3519},
    issn = {1087-0156},
    keywords = {Genome informatics, Software, Transcriptomics}
}

@article{Bray2015,
    title = {{Near-optimal RNA-Seq quantification}},
    year = {2015},
    author = {Bray, Nicolas and Pimentel, Harold and Melsted, Páll and Pachter, Lior},
    month = {5},
    url = {http://arxiv.org/abs/1505.02710},
    arxivId = {1505.02710}
}

@article{Bau2017,
    title = {{Network Dissection: Quantifying Interpretability of Deep Visual Representations}},
    year = {2017},
    author = {Bau, David and Zhou, Bolei and Khosla, Aditya and Oliva, Aude and Torralba, Antonio},
    month = {4},
    url = {http://arxiv.org/abs/1704.05796},
    arxivId = {1704.05796}
}

@article{Bau2017a,
    title = {{Network Dissection: Quantifying Interpretability of Deep Visual Representations}},
    year = {2017},
    author = {Bau, David and Zhou, Bolei and Khosla, Aditya and Oliva, Aude and Torralba, Antonio},
    url = {http://arxiv.org/abs/1704.05796},
    arxivId = {1704.05796}
}

@article{Zhang2017,
    title = {{Network-based machine learning and graph theory algorithms for precision oncology}},
    year = {2017},
    journal = {npj Precision Oncology},
    author = {Zhang, Wei and Chien, Jeremy and Yong, Jeongsik and Kuang, Rui},
    number = {1},
    month = {12},
    pages = {25},
    volume = {1},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/articles/s41698-017-0029-7},
    doi = {10.1038/s41698-017-0029-7},
    issn = {2397-768X},
    keywords = {Cancer Research, Gene Therapy, Human Genetics, Internal Medicine, Medicine/Public Health, Oncology, general}
}

@article{Li2008,
    title = {{Network-constrained regularization and variable selection for analysis of genomic data}},
    year = {2008},
    journal = {Bioinformatics},
    author = {Li, Caiyan and Li, Hongzhe},
    url = {https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btn081},
    isbn = {1367-4811 (Electronic){\textbackslash}r1367-4803 (Linking)},
    doi = {10.1093/bioinformatics/btn081},
    issn = {13674803},
    pmid = {18310618}
}

@article{Min2016,
    title = {{Network-regularized Sparse Logistic Regression Models for Clinical Risk Prediction and Biomarker Discovery}},
    year = {2016},
    journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
    author = {Min, Wenwen and Liu, Juan and Zhang, Shihua},
    url = {https://arxiv.org/pdf/1609.06480v1.pdf http://arxiv.org/abs/1609.06480},
    doi = {10.1109/TCBB.2016.2640303},
    issn = {1545-5963},
    arxivId = {1609.06480},
    keywords = {Index Terms—Sparse logistic regression, feature selection ✦, network-regularized penalty, survival risk prediction}
}

@article{Bahdanau2014,
    title = {{Neural Machine Translation By Jointly Learning To Align and Translate}},
    year = {2014},
    journal = {Iclr 2015},
    author = {Bahdanau, Dzmitry and Cho, Kyunghyun and Bengio, Yoshua},
    url = {https://arxiv.org/pdf/1409.0473.pdf http://arxiv.org/abs/1409.0473v3},
    isbn = {0147-006X (Print)},
    doi = {10.1146/annurev.neuro.26.041002.131047},
    issn = {0147-006X},
    pmid = {14527267},
    arxivId = {1409.0473},
    keywords = {Neural machine translation is a recently proposed, Unlike the traditional statistical machine transla, a source sentence into a fixed-length vector from, and propose to extend this by allowing a model to, bottleneck in improving the performance of this ba, for parts of a source sentence that are relevant t, having to form these parts as a hard segment expli, machine translation often belong to a family of en, maximize the translation performance. The models p, phrase-based system on the task of English-to-Fren, qualitative analysis reveals that the (soft-)align, the neural machine, translation aims at building a single neural netwo, translation. In this paper, we achieve a translation performance comparable to, we conjecture that the use of a fixed-length vecto, well with our intuition, without}
}

@article{Gilmer2017,
    title = {{Neural Message Passing for Quantum Chemistry}},
    year = {2017},
    author = {Gilmer, Justin and Schoenholz, Samuel S. and Riley, Patrick F. and Vinyals, Oriol and Dahl, George E.},
    month = {4},
    url = {http://arxiv.org/abs/1704.01212},
    arxivId = {1704.01212}
}

@article{Chattopadhyay2019,
    title = {{Neural Network Attributions: A Causal Perspective}},
    year = {2019},
    author = {Chattopadhyay, Aditya and Manupriya, Piyushi and Sarkar, Anirban and Balasubramanian, Vineeth N},
    month = {2},
    url = {http://arxiv.org/abs/1902.02302},
    arxivId = {1902.02302}
}

@misc{Cohen2016d,
    title = {{Neural Network Examples}},
    year = {2016},
    booktitle = {GitHub},
    author = {Cohen, Joseph Paul},
    url = {https://github.com/ieee8023/NeuralNetwork-Examples/%0A}
}

@article{Vohradsky2001,
    title = {{Neural network model of gene expression}},
    year = {2001},
    journal = {The FASEB Journal},
    author = {Vohradsk{\'{y}}, JIŘÍ},
    number = {3},
    month = {3},
    pages = {846--854},
    volume = {15},
    publisher = {Federation of American Societies for Experimental Biology},
    url = {http://www.fasebj.org/doi/10.1096/fj.00-0361com},
    doi = {10.1096/fj.00-0361com},
    issn = {0892-6638},
    keywords = {genetic network, mathematical modeling, regulation of gene expression}
}

@article{rowley_neural_1998,
    title = {{Neural network-based face detection}},
    year = {1998},
    journal = {Pattern Analysis and Machine Intelligence, IEEE Transactions on},
    author = {Rowley, H A and Baluja, S and Kanade, T},
    number = {1},
    pages = {23--38},
    volume = {20}
}

@article{Baldi1989,
    title = {{Neural networks and principal component analysis: Learning from examples without local minima}},
    year = {1989},
    journal = {Neural Networks},
    author = {Baldi, Pierre and Hornik, Kurt},
    number = {1},
    pages = {53--58},
    volume = {2},
    isbn = {0893-6080},
    doi = {10.1016/0893-6080(89)90014-2},
    issn = {08936080},
    keywords = {Back propagation, Learning, Neural networks, Principal component analysis}
}

@book{Reed1999smithing,
    title = {{Neural smithing : supervised learning in feedforward artificial neural networks}},
    year = {1999},
    author = {Reed, Russell D. and Marks, Robert J.},
    publisher = {MIT Press},
    url = {https://mitpress.mit.edu/books/neural-smithing},
    isbn = {9780262181907}
}

@article{Goodfellow2016,
    title = {{NIPS 2016 Tutorial: Generative Adversarial Networks}},
    year = {2016},
    author = {Goodfellow, Ian},
    month = {12},
    url = {http://arxiv.org/abs/1701.00160},
    arxivId = {1701.00160}
}

@inproceedings{Shankar2017,
    title = {{No Classification without Representation: Assessing Geodiversity Issues in Open Data Sets for the Developing World}},
    year = {2017},
    booktitle = {NeurIPS Workshop on Machine Learning for the Developing World},
    author = {Shankar, Shreya and Halpern, Yoni and Breck, Eric and Atwood, James and Wilson, Jimbo and Sculley, D.},
    month = {11},
    url = {http://arxiv.org/abs/1711.08536},
    arxivId = {1711.08536}
}

@article{Schaul2016,
    title = {{No More Pesky Learning Rates}},
    year = {2016},
    author = {Schaul, Tom and Zhang, Sixin and Lecun, Yann}
}

@article{kalbfleisch1978non,
    title = {{Non-Parametric Bayesian Analysis of Survival Time Data}},
    year = {1978},
    journal = {Journal of the Royal Statistical Society. Series B},
    author = {Kalbfleisch, John},
    number = {2},
    pages = {214--221},
    volume = {40},
    publisher = {JSTOR}
}

@article{SammonJr1969,
    title = {{Nonlinear Mapping Structure Analysis}},
    year = {1969},
    journal = {IEEE Transactions on Computers},
    author = {Sammon, John W},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1671271 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1671271&abstractAccess=no&userType= http://www.cs.iupui.edu/~tuceryan/pdf-repository/Sammon1969.pdf http://doi.ieeecomputersociety.org/10.},
    doi = {10.1109/T-C.1969.222678},
    keywords = {Clustering, dimensionality reduction, mappings, multidimensional scaling, multivariate data analysis, nonparametric, pattern recognition, statistics}
}

@article{Chena,
    title = {{Nonnegativity Constraints in Numerical Analysis}},
    author = {Chen, Donghui and Plemmons, Robert J},
    url = {http://users.wfu.edu/plemmons/papers/nonneg.pdf},
    keywords = {image processing, matrix and tensor fac-torizations, nonnegative least squares, nonnegativity constraints, optimization}
}

@article{kaplan1958j,
    title = {{Nonparametric Estimation from Incomplete Observations}},
    year = {1958},
    journal = {Source Journal of the American Statistical Association},
    author = {Kaplan, E L and Meier, Paul},
    number = {282},
    pages = {457--481},
    volume = {53},
    publisher = {Taylor {\&} Francis},
    url = {http://www.jstor.org/stable/2281868%5Cnhttp://about.jstor.org/terms},
    isbn = {01621459},
    doi = {10.2307/2281868},
    issn = {01621459},
    pmid = {252}
}

@inproceedings{Arpit2016,
    title = {{Normalization Propagation: A Parametric Technique for Removing Internal Covariate Shift in Deep Networks}},
    year = {2016},
    booktitle = {International Conference on Machine Learning},
    author = {Arpit, Devansh and Zhou, Yingbo and Kota, Bhargava U. and Govindaraju, Venu},
    month = {3},
    url = {http://arxiv.org/abs/1603.01431},
    isbn = {9781510829008},
    arxivId = {1603.01431}
}

@article{Shi2000,
    title = {{Normalized cuts and image segmentation}},
    year = {2000},
    journal = {Pattern Analysis and Machine Intelligence, IEEE Transactions on},
    author = {Shi, Jianbo and Malik, Jitendra},
    number = {8},
    pages = {888–905},
    volume = {22},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=868688 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=868688&abstractAccess=no&userType=inst http://repository.upenn.edu/cgi/viewcontent.cgi?article=1101&context=cis_papers}
}

@article{Theis,
    title = {{Note on the evaluation of generative models}},
    year = {2016},
    author = {Bethge, Matthias},
    url = {https://arxiv.org/pdf/1511.01844.pdf},
    arxivId = {arXiv:1511.01844v3}
}

@techreport{Evans2009,
    title = {{Notes on the OpenSURF Library}},
    year = {2009},
    author = {Evans, Christopher},
    month = {1},
    url = {http://www.chrisevansdev.com},
    institution = {University of Bristol}
}

@article{Lin2020,
    title = {{Novel Coronavirus Pneumonia Outbreak in 2019: Computed Tomographic Findings in Two Cases.}},
    year = {2020},
    journal = {Korean journal of radiology},
    author = {Lin, Xiaoqi and Gong, Zhenyu and Xiao, Zuke and Xiong, Jingliang and Fan, Bing and Liu, Jiaqi},
    month = {2},
    volume = {21},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/32056397},
    doi = {10.3348/kjr.2020.0078},
    issn = {2005-8330},
    pmid = {32056397},
    keywords = {2019 novel coronavirus, Severe acute respiratory infection, computed tomography}
}

@inproceedings{Kliger2018,
    title = {{Novelty Detection with GAN}},
    year = {2018},
    booktitle = {International Conference on Learning Representations},
    author = {Kliger, Mark and Fleishman, Shachar},
    number = {2017},
    pages = {1--10},
    url = {https://openreview.net/pdf?id=Hy7EPh10W}
}

@article{Spohrer1986,
    title = {{Novice mistakes: Are the folk wisdoms correct?}},
    shorttitle = {Novice mistakes},
    year = {1986},
    journal = {Communications of the ACM},
    author = {Spohrer, J. C and Soloway, E.},
    number = {7},
    pages = {624–632},
    volume = {29},
    url = {http://dl.acm.org/citation.cfm?id=6145}
}

@article{Doudkine1995,
    title = {{Nuclear texture measurements in image cytometry.}},
    year = {1995},
    journal = {Pathologica},
    author = {Doudkine, A and Macaulay, C and Poulin, N and Palcic, B},
    volume = {87}
}

@article{Bousseljot2009,
    title = {{Nutzung der EKG-Signaldatenbank CARDIODAT der PTB {\"{u}}ber das Internet}},
    year = {2009},
    journal = {Biomedizinische Technik/Biomedical Engineering},
    author = {Bousseljot, R. and Kreiseler, D. and Schnabel, A.},
    number = {s1},
    month = {7},
    pages = {317--318},
    volume = {40},
    publisher = {Walter de Gruyter, Berlin / New York},
    url = {https://degruyter.com/view/j/bmte.1995.40.issue-s1/bmte.1995.40.s1.317/bmte.1995.40.s1.317.xml},
    doi = {10.1515/bmte.1995.40.s1.317},
    issn = {0013-5585}
}

@article{Blaschke2010,
    title = {{Object based image analysis for remote sensing}},
    year = {2010},
    journal = {ISPRS journal of photogrammetry and remote sensing},
    author = {Blaschke, Thomas},
    number = {1},
    month = {1},
    pages = {2--16},
    volume = {65},
    url = {http://linkinghub.elsevier.com/retrieve/pii/S0924271609000884 http://ac.els-cdn.com/S0924271609000884/1-s2.0-S0924271609000884-main.pdf?_tid=ad6f5a56-5e1c-11e3-ada8-00000aab0f26&acdnat=1386296485_140dc7fd654de7ebad7830c78612fd38 http://www.sciencedirect.c},
    doi = {10.1016/j.isprsjprs.2009.06.004},
    issn = {09242716}
}

@article{Bar-Hillel2005,
    title = {{Object class recognition by boosting a part-based model}},
    year = {2005},
    author = {Bar-Hillel, A. and Hertz, T. and Weinshall, D.},
    url = {http://www.computer.org/portal/web/csdl/doi/10.1109/CVPR.2005.250}
}

@inproceedings{Fergus2003,
    title = {{Object class recognition by unsupervised scale-invariant learning}},
    year = {2003},
    author = {Fergus, Robert and Perona, Pietro and Zisserman, Andrew},
    pages = {II–264},
    volume = {2},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1211479 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1211479&abstractAccess=no&userType=inst http://www.stat.ucla.edu/~yuille/courses/Stat238-Winter10/fergus03object.pdf}
}

@article{Schmitt2011,
    title = {{Object Classification and Localization Using SURF Descriptors}},
    year = {2011},
    author = {Schmitt, Drew and McCoy, Nicholas},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.375.1456&rep=rep1&type=pdf}
}

@article{Zhao_Obj_2019,
    title = {{Object Detection With Deep Learning: A Review}},
    year = {2019},
    journal = {IEEE Transactions on Neural Networks and Learning Systems},
    author = {Zhao, Zhong-Qiu and Zheng, Peng and Xu, Shou-Tao and Wu, Xindong},
    month = {1},
    pages = {1--21},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/30703038 https://ieeexplore.ieee.org/document/8627998/},
    doi = {10.1109/TNNLS.2018.2876865},
    issn = {2162-237X},
    pmid = {30703038}
}

@article{Felzenszwalb2010,
    title = {{Object Detection with Discriminatively Trained Part-Based Models}},
    year = {2009},
    journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    author = {Felzenszwalb, P.F. F and Girshick, R.B. B and McAllester, D. and Ramanan, D.},
    number = {9},
    month = {9},
    pages = {1627--1645},
    volume = {32},
    url = {http://www.computer.org/portal/web/csdl/doi/10.1109/TPAMI.2009.167 http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=5255236},
    doi = {10.1109/TPAMI.2009.167},
    issn = {0162-8828}
}

@article{Baltsavias2004,
    title = {{Object extraction and revision by image analysis using existing geodata and knowledge: current status and steps towards operational systems}},
    shorttitle = {Object extraction and revision by image analysis u},
    year = {2004},
    journal = {ISPRS Journal of Photogrammetry and Remote Sensing},
    author = {Baltsavias, E. P.},
    url = {http://www.sciencedirect.com/science/article/pii/S0924271603000546 http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.10.8742&rep=rep1&type=pdf}
}

@book{Baltsavias2002,
    title = {{Object extraction and revision by image analysis using existing geospatial data and knowledge: state-of-the-art and steps towards operational systems}},
    shorttitle = {Object extraction and revision by image analysis u},
    year = {2002},
    author = {Baltsavias, Emmanuel P. and Baltsavias, Emmanuel P. and Baltsavias, Emmanuel P.},
    publisher = {Citeseer},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.15.5591&rep=rep1&type=pdf}
}

@article{Mayer2008,
    title = {{Object extraction in photogrammetric computer vision}},
    year = {2008},
    journal = {ISPRS Journal of Photogrammetry and Remote Sensing},
    author = {Mayer, Helmut},
    number = {2},
    pages = {213–222},
    volume = {63},
    url = {http://www.sciencedirect.com/science/article/pii/S0924271607001207 http://perpustakaan.big.go.id/lib/file_artikel/Object extraction.pdf}
}

@book{Seib2013,
    title = {{Object Recognition Using Hough-Transform Clustering of SURF Features}},
    year = {2013},
    author = {Seib, Viktor and Kusenbach, Michael and Thierfelder, Susanne and Paulus, Dietrich},
    url = {http://www.uni-koblenz.de/~agas/Documents/Seib2013ORU.pdf}
}

@article{Chen2005,
    title = {{Objective clustering of proteins based on subcellular location patterns.}},
    year = {2005},
    journal = {J Biomed Biotechnol},
    author = {Chen, X and Murphy, R F},
    volume = {2005},
    url = {http://dx.doi.org/10.1155/JBB.2005.87},
    doi = {10.1155/JBB.2005.87}
}

@article{Cockshott1983,
    title = {{Observer variation in skeletal radiology}},
    year = {1983},
    journal = {Skeletal Radiology},
    author = {Cockshott, Peter and Park, William M.},
    publisher = {Springer-Verlag},
    doi = {10.1007/BF00360790},
    issn = {14322161},
    keywords = {Bone radiology, Observer variability}
}

@inproceedings{Sjogren2019,
    title = {{ODIN: Outlier Detection In Neural Networks}},
    year = {2019},
    booktitle = {Not Published},
    author = {Sj{\"{o}}gren, Rickard and Trygg, Johan},
    url = {https://openreview.net/forum?id=rkGqLoR5tX},
    isbn = {9781450300551},
    keywords = {algorithms, and experimentation, spatial data has greatly, spatial gaussian random field, spatial outlier detection, the ever-increasing volume of, theory}
}

@inproceedings{metzen2017detecting,
    title = {{On Detecting Adversarial Perturbations}},
    year = {2017},
    booktitle = {International Conference on Learning Representations},
    author = {Metzen, Jan Hendrik and Genewein, Tim and Fischer, Volker and Bischoff, Bastian},
    url = {https://arxiv.org/abs/1702.04267}
}

@article{Mianjy2019,
    title = {{On Dropout and Nuclear Norm Regularization}},
    year = {2019},
    author = {Mianjy, Poorya and Arora, Raman},
    month = {5},
    url = {http://arxiv.org/abs/1905.11887},
    arxivId = {1905.11887}
}

@inproceedings{Butterworth2005,
    title = {{On feature selection through clustering}},
    year = {2005},
    author = {Butterworth, R. and Piatetsky-Shapiro, G. and Simovici, D.A.},
    pages = {4–pp}
}

@article{Ng1998,
    title = {{On feature selection: learning with exponentially many irrevelant features as training examples}},
    shorttitle = {On feature selection},
    year = {1998},
    journal = {International Conference on Machine Learning},
    author = {Ng, Andrew Y.},
    url = {http://ai.stanford.edu/~ang/papers/icml98-fs.pdf}
}

@article{Nichol2018,
    title = {{On First-Order Meta-Learning Algorithms}},
    year = {2018},
    author = {Nichol, Alex and Achiam, Joshua and Schulman, John},
    url = {https://arxiv.org/pdf/1803.02999.pdf http://arxiv.org/abs/1803.02999},
    isbn = {0494151056},
    doi = {arXiv:1803.02999v3},
    arxivId = {1803.02999}
}

@article{Pearson1901,
    title = {{On lines and planes of closest fit to systems of points in space}},
    year = {1901},
    journal = {The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science},
    author = {Pearson, Karl},
    month = {11},
    url = {https://doi.org/10.1080/14786440109462720},
    doi = {10.1080/14786440109462720}
}

@inproceedings{Jorgensen2011,
    title = {{On mouse dynamics as a behavioral biometric for authentication}},
    year = {2011},
    author = {Jorgensen, Z. and Yu, T.},
    pages = {476–482},
    url = {http://dl.acm.org/citation.cfm?id=1966983 http://www4.ncsu.edu/~tyu/pubs/asiaccs11-jorgensen.pdf}
}

@inproceedings{steck2008ranking,
    title = {{On ranking in survival analysis: Bounds on the concordance index}},
    year = {2007},
    booktitle = {Neural Information Processing Systems},
    author = {Raykar, Vikas C and Steck, Harald and Krishnapuram, Balaji and Dehing-oberije, Cary and Lambin, Philippe},
    pages = {1209--1216},
    url = {http://machinelearning.wustl.edu/mlpapers/paper_files/NIPS2007_535.pdf},
    isbn = {160560352X},
    doi = {10.1.1.121.2670}
}

@article{Tang2018,
    title = {{On Regularized Losses for Weakly-supervised CNN Segmentation}},
    year = {2018},
    author = {Tang, Meng and Perazzi, Federico and Djelouah, Abdelaziz and Ayed, Ismail Ben and Schroers, Christopher and Boykov, Yuri},
    month = {3},
    url = {http://arxiv.org/abs/1803.09569},
    arxivId = {1803.09569}
}

@inproceedings{cohen2020limits,
    title = {{On the limits of cross-domain generalization in automated X-ray prediction}},
    year = {2020},
    booktitle = {Medical Imaging with Deep Learning},
    author = {Cohen, Joseph Paul and Hashir, Mohammad and Brooks, Rupert and Bertrand, Hadrien},
    url = {https://arxiv.org/abs/2002.02497}
}

@article{Montufar2014,
    title = {{On the Number of Linear Regions of Deep Neural Networks}},
    year = {2014},
    journal = {NIPS},
    author = {Pascanu, Razvan and Cho, Kyunghyun and Bengio, Yoshua},
    month = {2},
    pages = {1--12},
    url = {http://arxiv.org/abs/1402.1869},
    issn = {10495258},
    arxivId = {arXiv:1402.1869v1},
    keywords = {deep learning, input space partition, maxout, neural network, rectifier}
}

@article{Garland1949,
    title = {{On the scientific evaluation of diagnostic procedures.}},
    year = {1949},
    journal = {Radiology},
    author = {Garland, Henry},
    doi = {10.1148/52.3.309},
    issn = {00338419}
}

@inproceedings{Garcia2015,
    title = {{One-Day Activities for K-12 Face-to-Face Outreach}},
    year = {2015},
    booktitle = {Proceedings of the 46th ACM Technical Symposium on Computer Science Education (SIGCSE '15)},
    author = {Garcia, Daniel D. and Hall, Soda and Ding, Wei and Cohen, Joseph and Ericson, Barbara and Gray, Jeff and Reed, Dale and Garcia, Daniel D.},
    pages = {520--521},
    series = {SIGCSE '15},
    publisher = {ACM},
    url = {http://doi.acm.org/10.1145/2676723.2677337 http://dl.acm.org/ft_gateway.cfm?id=2677337&type=pdf},
    address = {New York, NY, USA},
    isbn = {9781450329668},
    doi = {10.1145/2676723.2677337}
}

@article{Santoro2016,
    title = {{One-shot Learning with Memory-Augmented Neural Networks}},
    year = {2016},
    author = {Santoro, Adam and Bartunov, Sergey and Botvinick, Matthew and Wierstra, Daan and Lillicrap, Timothy},
    month = {5},
    url = {http://arxiv.org/abs/1605.06065},
    arxivId = {1605.06065}
}

@article{Benaim2017,
    title = {{One-Sided Unsupervised Domain Mapping}},
    year = {2017},
    author = {Benaim, Sagie and Wolf, Lior},
    url = {https://arxiv.org/pdf/1706.00826.pdf}
}

@misc{ONNX2017,
    title = {{ONNX: Open Neural Network Exchange}},
    year = {2017},
    booktitle = {GitHub repository},
    author = {Bai, Junjie and Lu, Fang and Zhang, Ke and {others}},
    publisher = {GitHub},
    howpublished = {https://github.com/onnx/onnx}
}

@book{Suber2012,
    title = {{Open access}},
    year = {2012},
    author = {Suber, Peter},
    pages = {242},
    series = {MIT Press essential knowledge series},
    publisher = {MIT Press},
    address = {Cambridge, Mass},
    isbn = {978-0-262-51763-8}
}

@article{VanNoorden2013,
    title = {{Open access: The true cost of science publishing}},
    shorttitle = {Open access},
    year = {2013},
    journal = {Nature},
    author = {Van Noorden, Richard},
    number = {7442},
    month = {3},
    pages = {426--429},
    volume = {495},
    url = {http://www.nature.com/doifinder/10.1038/495426a},
    doi = {10.1038/495426a},
    issn = {0028-0836, 1476-4687}
}

@article{Salamuniccar2008,
    title = {{Open framework for objective evaluation of crater detection algorithms with first test-field subsystem based on MOLA data}},
    year = {2008},
    journal = {Advances in Space Research},
    author = {Salamuniccar, G. and Loncaric, S.},
    number = {1},
    month = {7},
    pages = {6--19},
    volume = {42},
    url = {http://www.sciencedirect.com/science/article/B6V3S-4NGRRXS-J/2/ab0593af5bed6cc11fbaae4cf9b72ca0 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V3S-4NGRRXS-J&_user=1516297&_coverDate=07/01/2008&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sor},
    doi = {10.1016/j.asr.2007.04.028},
    issn = {0273-1177}
}

@misc{OGCd,
    title = {{Open GIS Consortium, Inc. (OGC)}},
    author = {{OGC}},
    url = {http://www.opengeospatial.org/}
}

@article{Shwartz-Ziv2017,
    title = {{Opening the Black Box of Deep Neural Networks via Information}},
    year = {2017},
    author = {Shwartz-Ziv, Ravid and Tishby, Naftali},
    month = {3},
    url = {https://arxiv.org/abs/1703.00810},
    arxivId = {1703.00810}
}

@phdthesis{Somayaji2002,
    title = {{Operating system stability and security through process homeostasis}},
    year = {2002},
    author = {Somayaji, A. B}
}

@article{Ching2018,
    title = {{Opportunities And Obstacles For Deep Learning In Biology And Medicine}},
    year = {2018},
    journal = {Journal of The Royal Society Interface},
    author = {Ching, Travers and Himmelstein, Daniel S. and Beaulieu-Jones, Brett K. and Kalinin, Alexandr A. and Do, Brian T. and Way, Gregory P. and Ferrero, Enrico and Agapow, Paul-Michael and Zietz, Michael and Hoffman, Michael M and Xie, Wei and Rosen, Gail L. and Lengerich, Benjamin J. and Israeli, Johnny and Lanchantin, Jack and Woloszynek, Stephen and Carpenter, Anne E. and Shrikumar, Avanti and Xu, Jinbo and Cofer, Evan M. and Lavender, Christopher A and Turaga, Srinivas C and Alexandari, Amr M and Lu, Zhiyong and Harris, David J. and DeCaprio, Dave and Qi, Yanjun and Kundaje, Anshul and Peng, Yifan and Wiley, Laura K. and Segler, Marwin H. S. and Boca, Simina M and Swamidass, S. Joshua and Huang, Austin and Gitter, Anthony and Greene, Casey S.},
    month = {1},
    publisher = {Cold Spring Harbor Laboratory},
    url = {https://www.biorxiv.org/content/early/2018/01/19/142760},
    doi = {10.1101/142760}
}

@article{Ghassemi2018,
    title = {{Opportunities in Machine Learning for Healthcare}},
    year = {2018},
    author = {Ghassemi, Marzyeh and Naumann, Tristan and Schulam, Peter and Beam, Andrew L and Ranganath, Rajesh},
    url = {https://arxiv.org/pdf/1806.00388.pdf},
    arxivId = {arXiv:1806.00388v2}
}

@article{Cheng2003,
    title = {{Optical landmark detection for spacecraft navigation}},
    year = {2003},
    journal = {Advances in the Astronautical Sciences},
    author = {Cheng, Y. and Johnson, A. E and Matthies, L. H and Olson, C. F},
    pages = {1785--1803},
    volume = {114}
}

@inproceedings{LeCun1989,
    title = {{Optimal brain damage.}},
    year = {1989},
    author = {LeCun, Yann and Denker, John S. and Solla, Sara A. and Howard, Richard E. and Jackel, Lawrence D.},
    volume = {89},
    url = {http://multilayer-perceptron-obd.googlecode.com/svn-history/r2/trunk/abc/lecun-90b.pdf}
}

@inproceedings{Hassibi1993,
    title = {{Optimal Brain Surgeon and general network pruning}},
    year = {1993},
    author = {Hassibi, B. and Stork, D.G. and Wolff, G.J.},
    pages = {293--299},
    url = {http://ieeexplore.ieee.org/ielx3/1059/7404/00298572.pdf?tp=&arnumber=298572&isnumber=7404 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=298572&tag=1},
    doi = {10.1109/ICNN.1993.298572}
}

@inproceedings{Parameswaran2011,
    title = {{Optimal Schemes for Robust Web Extraction}},
    year = {2011},
    author = {Parameswaran, Aditya and Dalvi, N. and Garcia-Molina, H. and Rastogi, R.},
    volume = {4}
}

@inproceedings{parameswaran_optimal_2011,
    title = {{Optimal Schemes for Robust Web Extraction}},
    year = {2011},
    booktitle = {International Conference on Very Large Data Bases},
    author = {Parameswaran, Aditya and Dalvi, N and Garcia-Molina, H and Rastogi, R}
}

@article{Courty2015,
    title = {{Optimal Transport for Domain Adaptation}},
    year = {2015},
    journal = {IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE},
    author = {Courty, Nicolas and Flamary, Rémi and Tuia, Devis and Rakotomamonjy, Alain},
    url = {https://arxiv.org/pdf/1507.00504.pdf},
    keywords = {Classification, Index Terms—Unsupervised Domain Adaptation, Optimal Transport, Transfer Learning, Visual Adaptation}
}

@article{Zhang2019,
    title = {{Optimizing the Factual Correctness of a Summary: A Study of Summarizing Radiology Reports}},
    year = {2019},
    author = {Zhang, Yuhao and Merck, Derek and Tsai, Emily Bao and Manning, Christopher D. and Langlotz, Curtis P.},
    month = {11},
    url = {http://arxiv.org/abs/1911.02541},
    arxivId = {1911.02541}
}

@article{Bojanowski2017,
    title = {{Optimizing the Latent Space of Generative Networks}},
    year = {2017},
    author = {Bojanowski, Piotr and Joulin, Armand and Lopez-Paz, David and Szlam, Arthur},
    url = {https://arxiv.org/pdf/1707.05776.pdf}
}

@misc{10.1007/s00330-020-06748-2,
    title = {{Outbreak of novel coronavirus (COVID-19): What is the role of radiologists?}},
    year = {2020},
    booktitle = {European Radiology},
    author = {Kim, Hyungjin},
    publisher = {Springer},
    doi = {10.1007/s00330-020-06748-2},
    issn = {14321084},
    pmid = {32072255},
    keywords = {Diagnostic Radiology, Imaging / Radiology, Internal Medicine, Interventional Radiology, Neuroradiology, Ultrasound}
}

@article{Kirkpatrick2016,
    title = {{Overcoming catastrophic forgetting in neural networks}},
    year = {2016},
    author = {Kirkpatrick, James and Pascanu, Razvan and Rabinowitz, Neil and Veness, Joel and Desjardins, Guillaume and Rusu, Andrei A. and Milan, Kieran and Quan, John and Ramalho, Tiago and Grabska-Barwinska, Agnieszka and Hassabis, Demis and Clopath, Claudia and Kumaran, Dharshan and Hadsell, Raia},
    month = {12},
    url = {http://arxiv.org/abs/1612.00796},
    arxivId = {1612.00796}
}

@article{Sermanet2013,
    title = {{OverFeat: Integrated Recognition, Localization and Detection using Convolutional Networks}},
    year = {2013},
    journal = {arXiv preprint arXiv},
    author = {Sermanet, Pierre and Eigen, David and Zhang, Xiang and Mathieu, Michael and Fergus, Rob and LeCun, Yann},
    month = {12},
    pages = {1312.6229},
    url = {http://arxiv.org/abs/1312.6229},
    arxivId = {1312.6229}
}

@article{Reunanen2003,
    title = {{Overfitting in making comparisons between variable selection methods}},
    year = {2003},
    journal = {The Journal of Machine Learning Research},
    author = {Reunanen, Juha},
    pages = {1371–1382},
    volume = {3},
    url = {http://dl.acm.org/citation.cfm?id=944978 http://machinelearning.wustl.edu/mlpapers/paper_files/Reunanen03.pdf}
}

@misc{Bustos2019PadChest,
    title = {{PadChest: A large chest x-ray image dataset with multi-label annotated reports}},
    year = {2019},
    author = {Bustos, Aurelia and Pertusa, Antonio and Salinas, Jose-Maria and de la Iglesia-Vay{\'{a}}, Maria},
    month = {1},
    url = {http://arxiv.org/abs/1901.07441},
    arxivId = {1901.07441}
}

@article{Reed,
    title = {{Parallel Multiscale Autoregressive Density Estimation}},
    author = {Reed, Scott and Van Den Oord, Aäron and Kalchbrenner, Nal and G{\'{o}}mez Colmenarejo, Sergio and Wang, Ziyu and Belov, Dan and De Freitas, Nando},
    url = {https://arxiv.org/pdf/1703.03664.pdf},
    arxivId = {1703.03664}
}

@misc{Kucera,
    title = {{Parsing and Analyzing C/C++ code in Eclipse}},
    author = {Kucera, Mike},
    url = {http://wiki.eclipse.org/images/e/ec/McMaster_2012_invited_talk_cdt.pdf}
}

@article{Bernstein2005,
    title = {{Part-based statistical models for object classification and detection}},
    year = {2005},
    author = {Bernstein, E.J. and Amit, Y.},
    url = {http://www.computer.org/portal/web/csdl/doi/10.1109/CVPR.2005.270}
}

@article{Mao2014,
    title = {{PASA: Passive Broadcast for Smartphone Ad-hoc Networks}},
    shorttitle = {PASA},
    year = {2014},
    author = {Mao, Ying and Wang, Jiayin and Cohen, Joseph Paul and Sheng, Bo},
    month = {8},
    pages = {1--8},
    url = {http://ieeexplore.ieee.org/ielx7/6901364/6911704/06911820.pdf?tp=&arnumber=6911820&isnumber=6911704 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6911820&tag=1},
    doi = {10.1109/ICCCN.2014.6911820}
}

@article{Hou2015,
    title = {{Patch-based Convolutional Neural Network for Whole Slide Tissue Image Classification}},
    year = {2015},
    author = {Hou, Le and Samaras, Dimitris and Kurc, Tahsin M. and Gao, Yi and Davis, James E. and Saltz, Joel H.},
    month = {4},
    url = {http://arxiv.org/abs/1504.07947},
    arxivId = {1504.07947}
}

@article{Cerami2011,
    title = {{Pathway Commons, a web resource for biological pathway data.}},
    year = {2011},
    journal = {Nucleic acids research},
    author = {Cerami, Ethan G and Gross, Benjamin E and Demir, Emek and Rodchenkov, Igor and Babur, Ozgün and Anwar, Nadia and Schultz, Nikolaus and Bader, Gary D and Sander, Chris},
    publisher = {Oxford University Press},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/21071392 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3013659},
    doi = {10.1093/nar/gkq1039},
    issn = {1362-4962},
    pmid = {21071392}
}

@book{Devijver1982,
    title = {{Pattern recognition: A statistical approach}},
    year = {1982},
    author = {Devijver, P. A and Kittler, J.},
    publisher = {Prentice/Hall International}
}

@inproceedings{broadbent1957percolation,
    title = {{Percolation processes: I. Crystals and mazes}},
    year = {1957},
    booktitle = {Mathematical Proceedings of the Cambridge Philosophical Society},
    author = {Broadbent, Simon R and Hammersley, John M},
    organization = {Cambridge University Press}
}

@inproceedings{Phan2004,
    title = {{PEWeb: product extraction from the web based on entropy estimation}},
    shorttitle = {PEWeb},
    year = {2004},
    author = {Phan, X. H and Horiguchi, S. and Ho, T. B},
    pages = {590–593},
    url = {http://dl.acm.org/citation.cfm?id=1026390}
}

@article{DeJong2016,
    title = {{Pharmaceutical Industry–Sponsored Meals and Physician Prescribing Patterns for Medicare Beneficiaries}},
    year = {2016},
    journal = {JAMA Internal Medicine},
    author = {DeJong, Colette and Aguilar, Thomas and Tseng, Chien-Wen and Lin, Grace A. and Boscardin, W. John and Dudley, R. Adams},
    number = {8},
    month = {8},
    pages = {1114},
    volume = {176},
    publisher = {American Medical Association},
    url = {http://archinte.jamanetwork.com/article.aspx?doi=10.1001/jamainternmed.2016.2765},
    doi = {10.1001/jamainternmed.2016.2765},
    issn = {2168-6106},
    keywords = {angiotensin receptor antagonists, angiotensin-converting enzyme inhibitors, beta-blockers, desvenlafaxine, medicare, medicare part d, nebivolol, olmesartan medoxomil, pharmacy (field), physician-industry relations, prescribing behavior, promotional items, proprietary drug, rosuvastatin, selective norepinephrine re-uptake inhibitor, selective serotonin re-uptake inhibitors, serotonin and norepinephrine reuptake inhibitors, statins}
}

@article{Slepecky,
    title = {{Phenotypic plasticity in fungi: a review with observations on Aureobasidium pullulans.}},
    journal = {Mycologia},
    author = {Slepecky, Ralph A and Starmer, William T},
    number = {6},
    pages = {823--32},
    volume = {101},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/19927747},
    issn = {0027-5514},
    pmid = {19927747}
}

@misc{Arizona.edu,
    title = {{Phoenix Mars Mission}},
    author = {{arizona.edu}},
    url = {http://phoenix.lpl.arizona.edu http://phoenix.lpl.arizona.edu/index.php}
}

@inproceedings{Huang2010,
    title = {{PhoneNet: a phone-to-phone network for group communication within an administrative domain}},
    shorttitle = {PhoneNet},
    year = {2010},
    author = {Huang, T. Y. and Yap, K. K. and Dodson, B. and Lam, M. S. and McKeown, N.},
    pages = {27–32},
    url = {http://dl.acm.org/citation.cfm?id=1851331}
}

@article{Ledig2016,
    title = {{Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network}},
    year = {2016},
    journal = {arXiv},
    author = {Ledig, Christian and Theis, Lucas and Huszar, Ferenc and Caballero, Jose and Cunningham, Andrew and Acosta, Alejandro and Aitken, Andrew and Tejani, Alykhan and Totz, Johannes and Wang, Zehan and Shi, Wenzhe},
    url = {https://arxiv.org/pdf/1609.04802.pdf http://arxiv.org/abs/1609.04802},
    arxivId = {1609.04802}
}

@article{Fioravanti2017,
    title = {{Phylogenetic Convolutional Neural Networks in Metagenomics}},
    year = {2017},
    author = {Fioravanti, Diego and Giarratano, Ylenia and Maggio, Valerio and Agostinelli, Claudio and Chierici, Marco and Jurman, Giuseppe and Furlanello, Cesare},
    month = {9},
    url = {http://arxiv.org/abs/1709.02268},
    arxivId = {1709.02268}
}

@article{Goldberger2000,
    title = {{PhysioBank, PhysioToolkit, and PhysioNet}},
    year = {2000},
    journal = {Circulation},
    author = {Goldberger, Ary L. and Amaral, Luis A. N. and Glass, Leon and Hausdorff, Jeffrey M. and Ivanov, Plamen Ch. and Mark, Roger G. and Mietus, Joseph E. and Moody, George B. and Peng, Chung-Kang and Stanley, H. Eugene},
    month = {6},
    url = {https://www.ahajournals.org/doi/10.1161/01.CIR.101.23.e215},
    doi = {10.1161/01.CIR.101.23.e215},
    issn = {0009-7322}
}

@article{Singh2014,
    title = {{Pipeline for illumination correction of images for high-throughput microscopy}},
    year = {2014},
    journal = {Journal of Microscopy},
    author = {Singh, S. and Bray, M. A. and Jones, T. R. and Carpenter, A. E.},
    number = {3},
    month = {12},
    pages = {231--236},
    volume = {256},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/25228240 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4359755 http://doi.wiley.com/10.1111/jmi.12178},
    isbn = {1617714895},
    doi = {10.1111/jmi.12178},
    issn = {13652818},
    pmid = {25228240},
    keywords = {Fluorescence microscopy, High-throughput microscopy, Illumination correction, Shading correction, Vignetting}
}

@article{Oord2016,
    title = {{Pixel Recurrent Neural Networks}},
    year = {2016},
    journal = {International Conference of Machine Learning},
    author = {Oord, Aaron van den and Kalchbrenner, Nal and Kavukcuoglu, Koray},
    url = {https://arxiv.org/pdf/1601.06759.pdf http://arxiv.org/abs/1601.06759},
    isbn = {9781510829008},
    arxivId = {1601.06759}
}

@article{Jovanovic2006,
    title = {{Pixy: A static analysis tool for detecting web application vulnerabilities (short paper)}},
    shorttitle = {Pixy},
    year = {2006},
    author = {Jovanovic, N. and Kruegel, C. and Kirda, E.},
    url = {http://www.computer.org/portal/web/csdl/doi/10.1109/SP.2006.29}
}

@article{Michael2010,
    title = {{Planetary surface dating from crater size–frequency distribution measurements: Partial resurfacing events and statistical age uncertainty}},
    shorttitle = {Planetary surface dating from crater size–frequenc},
    year = {2010},
    journal = {Earth and Planetary Science Letters},
    author = {Michael, G. G. and Neukum, G.},
    number = {3–4},
    month = {6},
    pages = {223--229},
    series = {Mars Express after 6 Years in Orbit: Mars Geology from Three-Dimensional Mapping by the High Resolution Stereo Camera (HRSC) Experiment},
    volume = {294},
    url = {http://www.sciencedirect.com/science/article/pii/S0012821X1000004X http://www.sciencedirect.com/science/article/pii/S0012821X1000004X/pdfft?md5=229b42af7c46f4ca571ccb930888e2d0&pid=1-s2.0-S0012821X1000004X-main.pdf},
    doi = {10.1016/j.epsl.2009.12.041},
    issn = {0012-821X}
}

@article{Segler2018,
    title = {{Planning chemical syntheses with deep neural networks and symbolic AI}},
    year = {2018},
    journal = {Nature},
    author = {Segler, Marwin H. S. and Preuss, Mike and Waller, Mark P.},
    number = {7698},
    month = {3},
    pages = {604--610},
    volume = {555},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/doifinder/10.1038/nature25978},
    doi = {10.1038/nature25978},
    issn = {0028-0836},
    keywords = {Automation, Cheminformatics, Computer science, Synthetic chemistry methodology}
}

@article{Hawes2000,
    title = {{Plant Microtechnique and Microscopy. By Steven E. Ruzin. Published by Oxford University Press, New York, July 1999, xi + 322 pages. Softback. f32.50. ISBN 0-19-508956-1}},
    year = {2000},
    journal = {Journal of Microscopy},
    author = {Hawes, Chris},
    number = {3},
    month = {3},
    pages = {320--321},
    volume = {197},
    url = {http://doi.wiley.com/10.1046/j.1365-2818.2000.00673.x http://dx.doi.org/10.1046/j.1365-2818.2000.00673.x\nhttp://onlinelibrary.wiley.com/store/10.1046/j.1365-2818.2000.00673.x/asset/j.1365-2818.2000.00673.x.pdf?v=1&t=hz3khf7d&s=337a9e363ab8c1f17ee044e06ee},
    isbn = {0022-2720{\textbackslash}r1365-2818},
    doi = {10.1046/j.1365-2818.2000.00673.x},
    issn = {0022-2720}
}

@article{Redondo2015,
    title = {{Pollen segmentation and feature evaluation for automatic classification in bright-field microscopy}},
    year = {2015},
    journal = {Computers and Electronics in Agriculture},
    author = {Redondo, Rafael and Bueno, Gloria and Chung, Fran??ois François and Nava, Rodrigo and V{\'{i}}ctor Marcos, J. and Crist{\'{o}}bal, Gabriel and Rodr{\'{i}}guez, Tomás and Gonzalez-Porto, Amelia and Pardo, Cristina and D{\'{e}}niz, Oscar and Escalante-Ram{\'{i}}rez, B. and V??ctor Marcos, J. and Crist??bal, Gabriel and Rodr??guez, Tom??s and Gonzalez-Porto, Amelia and Pardo, Cristina and D??niz, Oscar and Escalante-Ram??rez, B.},
    pages = {56--69},
    volume = {110},
    publisher = {Elsevier B.V.},
    url = {http://dx.doi.org/10.1016/j.compag.2014.09.020},
    isbn = {0168-1699},
    doi = {10.1016/j.compag.2014.09.020},
    issn = {01681699},
    keywords = {Apiculture, Bright-field microscopy, Morphology descriptors, Pollen, Statistical descriptors, Texture descriptors}
}

@book{Hesse2004,
    title = {{Pollen Terminology An ilustrated handbook}},
    year = {2004},
    booktitle = {Chemistry {\&} {\ldots}},
    author = {Hesse, Halbritter and Zetter, Weber and Buchner, Frosch and Radivo, Ulrich},
    pages = {5 - 261},
    url = {http://onlinelibrary.wiley.com/doi/10.1002/cbdv.200490137/abstract},
    isbn = {9783211798935}
}

@article{Shaban-Nejad2017,
    title = {{PopHR: a knowledge-based platform to support integration, analysis, and visualization of population health data}},
    year = {2017},
    journal = {Annals of the New York Academy of Sciences},
    author = {Shaban-Nejad, Arash and Lavigne, Maxime and Okhmatovskaia, Anya and Buckeridge, David L.},
    number = {1},
    month = {1},
    pages = {44--53},
    volume = {1387},
    publisher = {John Wiley {\&} Sons, Ltd (10.1111)},
    url = {http://doi.wiley.com/10.1111/nyas.13271},
    doi = {10.1111/nyas.13271},
    issn = {00778923},
    keywords = {health data analytics, health informatics, population health record, population health surveillance, semantic data modeling}
}

@misc{Ravkin2005,
    title = {{Poster PO2025: Comparison of Several Classes of Algorithms for Cytoplasm to Nucleus Translocation.}},
    year = {2005},
    author = {Ravkin, I and Temov, V}
}

@misc{Gianfrancesco2018BiasEHR,
    title = {{Potential Biases in Machine Learning Algorithms Using Electronic Health Record Data}},
    year = {2018},
    booktitle = {JAMA Internal Medicine},
    author = {Gianfrancesco, Milena A. and Tamang, Suzanne and Yazdany, Jinoos and Schmajuk, Gabriela},
    number = {11},
    month = {11},
    pages = {1544--1547},
    volume = {178},
    publisher = {American Medical Association},
    url = {/pmc/articles/PMC6347576/?report=abstract https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347576/},
    doi = {10.1001/jamainternmed.2018.3763},
    issn = {21686106},
    pmid = {30128552}
}

@misc{Ghassemi2019guidance,
    title = {{Practical guidance on artificial intelligence for health-care data}},
    year = {2019},
    booktitle = {The Lancet Digital Health},
    author = {Ghassemi, Marzyeh and Naumann, Tristan and Schulam, P. and Beam, Andrew L. and Chen, Irene Y. and Ranganath, Rajesh},
    month = {8},
    publisher = {Elsevier Ltd},
    doi = {10.1016/S2589-7500(19)30084-6},
    issn = {25897500}
}

@inproceedings{Graves2011,
    title = {{Practical Variational Inference for Neural Networks}},
    year = {2011},
    booktitle = {Advances in Neural Information Processing Systems 24},
    author = {Graves, Alex},
    url = {http://papers.nips.cc/paper/4329-practical-variational-inference-for-neural-networks.pdf}
}

@article{10.7717/peerj.4568,
    title = {{Pre-trained convolutional neural networks as feature extractors toward improved malaria parasite detection in thin blood smear images}},
    year = {2018},
    journal = {PeerJ},
    author = {Rajaraman, Sivaramakrishnan and Antani, Sameer K. and Poostchi, Mahdieh and Silamut, Kamolrat and Hossain, Md A. and Maude, Richard J. and Jaeger, Stefan and Thoma, George R.},
    number = {4},
    month = {4},
    pages = {e4568},
    volume = {2018},
    publisher = {PeerJ Inc.},
    url = {https://peerj.com/articles/4568},
    doi = {10.7717/peerj.4568},
    issn = {21678359},
    keywords = {Blood smear, Computer-aided diagnosis, Convolutional Neural Networks, Deep learning, Feature extraction, Machine learning, Malaria, Pre-trained models, Screening}
}

@article{Nielandt2016,
    title = {{Predicate enrichment of aligned XPaths for wrapper induction}},
    year = {2016},
    journal = {Expert Systems with Applications},
    author = {Nielandt, Joachim and Bronselaer, Antoon and De Tr{\'{e}}, Guy},
    publisher = {Elsevier Ltd},
    doi = {10.1016/j.eswa.2015.12.040},
    issn = {09574174},
    keywords = {List alignment, Predicate enrichment, Wrapper induction, Xpath alignment}
}

@article{Yousefi,
    title = {{Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models}},
    author = {Yousefi, Safoora and Amrollahi, Fatemeh and Amgad, Mohamed and Dong, Coco and Lewis, Joshua E and Song, Congzheng and Gutman, David A and Halani, Sameer H and Enrique, Jose and Vega, Velazquez and Brat, Daniel J and Cooper, Lee Ad},
    url = {http://www.biorxiv.org/content/biorxiv/early/2017/04/27/131367.full.pdf},
    doi = {10.1101/131367}
}

@article{yousefi2017predicting,
    title = {{Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models}},
    year = {2017},
    journal = {Scientific Reports},
    author = {Yousefi, Safoora and Amrollahi, Fatemeh and Amgad, Mohamed and Dong, Chengliang and Lewis, Joshua E. and Song, Congzheng and Gutman, David A. and Halani, Sameer H. and Vega, Jose Enrique Velazquez and Brat, Daniel J. and Cooper, Lee A.D.},
    number = {1},
    volume = {7},
    publisher = {Nature Publishing Group},
    isbn = {2045-2322 (Electronic)
2045-2322 (Linking)},
    doi = {10.1038/s41598-017-11817-6},
    issn = {20452322},
    pmid = {28916782}
}

@article{Cohen2020severity,
    title = {{Predicting COVID-19 Pneumonia Severity on Chest X-ray with Deep Learning}},
    year = {2020},
    journal = {arXiv:2005.11856},
    author = {Cohen, Joseph Paul and Dao, Lan and Morrison, Paul and Roth, Karsten and Bengio, Yoshua and Shen, Beiyi and Abbasi, Almas and Hoshmand-Kochi, Mahsa and Ghassemi, Marzyeh and Li, Haifang and Duong, Tim Q},
    month = {5},
    url = {http://arxiv.org/abs/2005.11856},
    arxivId = {2005.11856}
}

@article{Zhou2015,
    title = {{Predicting effects of noncoding variants with deep learning-based sequence model}},
    year = {2015},
    journal = {Nature Methods},
    author = {Zhou, Jian and Troyanskaya, Olga G.},
    number = {10},
    month = {9},
    pages = {931--934},
    volume = {12},
    publisher = {Nature Publishing Group},
    doi = {10.1038/nmeth.3547},
    issn = {15487105},
    pmid = {26301843}
}

@article{Singh2019,
    title = {{Predicting enhancer-promoter interaction from genomic sequence with deep neural networks}},
    year = {2019},
    journal = {Quantitative Biology},
    author = {Singh, Shashank and Yang, Yang and P{\'{o}}czos, Barnabás and Ma, Jian},
    number = {2},
    month = {6},
    pages = {122--137},
    volume = {7},
    publisher = {Higher Education Press},
    doi = {10.1007/s40484-019-0154-0},
    issn = {20954697},
    keywords = {chromatin interaction, deep neural network, enhancer-promoter interaction}
}

@article{Zitnik2017,
    title = {{Predicting multicellular function through multi-layer tissue networks}},
    year = {2017},
    author = {Zitnik, Marinka and Leskovec, Jure},
    month = {7},
    url = {http://arxiv.org/abs/1707.04638 http://dx.doi.org/10.1093/bioinformatics/btx252},
    doi = {10.1093/bioinformatics/btx252},
    arxivId = {1707.04638}
}

@article{Zitnik2017b,
    title = {{Predicting multicellular function through multi-layer tissue networks}},
    year = {2017},
    journal = {Bioinformatics},
    author = {Zitnik, Marinka and Leskovec, Jure},
    number = {14},
    pages = {190--198},
    volume = {33}
}

@article{Ebadollahi2010,
    title = {{Predicting Patient's Trajectory of Physiological Data using Temporal Trends in Similar Patients: A System for Near-Term Prognostics}},
    year = {2010},
    journal = {AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium},
    author = {Ebadollahi, Shahram and Sun, Jimeng and Gotz, David and Hu, Jianying and Sow, Daby and Neti, Chalapathy},
    pages = {192--196},
    volume = {2010},
    publisher = {American Medical Informatics Association},
    url = {/pmc/articles/PMC3041306/?report=abstract https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041306/},
    issn = {1942597X},
    pmid = {21346967}
}

@article{Lerma2016,
    title = {{Predicting the risk of sudden cardiac death}},
    year = {2016},
    journal = {The Journal of Physiology},
    author = {Lerma, Claudia and Glass, Leon},
    number = {9},
    month = {5},
    pages = {2445--2458},
    volume = {594},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/26660287 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4850192 http://doi.wiley.com/10.1113/JP270535},
    doi = {10.1113/JP270535},
    issn = {00223751},
    pmid = {26660287}
}

@article{Paggi,
    title = {{Predicting Transcriptional Regulatory Activities with Deep Convolutional Networks}},
    author = {Paggi, Joe and Lamb, Andrew and Tian, Kevin and Hsu, Irving and Cedoz, Pierre-Louis and Kawthekar, Prasad},
    doi = {10.1101/099879}
}

@inproceedings{Lo2015,
    title = {{Prediction gradients for feature extraction and analysis from convolutional neural networks}},
    year = {2015},
    booktitle = {International Conference on Automatic Face and Gesture Recognition},
    author = {Lo, Henry Z. and Cohen, Joseph Paul and Ding, Wei},
    month = {5},
    url = {http://ieeexplore.ieee.org/ielx7/7147635/7163073/07163154.pdf?tp=&arnumber=7163154&isnumber=7163073 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7163154&tag=1 http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=7163154},
    isbn = {978-1-4799-6026-2},
    doi = {10.1109/FG.2015.7163154},
    keywords = {CNNs, Face, Face recognition, Feature extraction, Neural networks, Optimization, Training, Visualization, computer vision, data visualisation, deep convolutional neural networks, face recognition, feature extraction, gradient methods, network prediction, neural nets, optimisation, pixel space visualizing units, prediction gradients, standard face recognition data set}
}

@article{Wynants2020criticalappraisal,
    title = {{Prediction models for diagnosis and prognosis of COVID-19 infection: Systematic review and critical appraisal}},
    year = {2020},
    journal = {The BMJ},
    author = {Wynants, Laure and Van Calster, Ben and Bonten, Marc M.J. and Collins, Gary S. and Debray, Thomas P.A. and De Vos, Maarten and Haller, Maria C. and Heinze, Georg and Moons, Karel G.M. and Riley, Richard D. and Schuit, Ewoud and Smits, Luc J.M. and Snell, Kym I.E. and Steyerberg, Ewout W. and Wallisch, Christine and Van Smeden, Maarten},
    month = {4},
    volume = {369},
    publisher = {BMJ Publishing Group},
    doi = {10.1136/bmj.m1328},
    issn = {17561833},
    pmid = {32265220}
}

@article{Poplin2018,
    title = {{Prediction of cardiovascular risk factors from retinal fundus photographs via deep learning}},
    year = {2018},
    journal = {Nature Biomedical Engineering},
    author = {Poplin, Ryan and Varadarajan, Avinash V and Blumer, Katy and Liu, Yun and McConnell, Michael V and Corrado, Greg S and Peng, Lily and Webster, Dale R},
    url = {https://doi.org/10.1038/s41551-018-0195-0},
    isbn = {4155101801950},
    doi = {10.1038/s41551-018-0195-0}
}

@article{Yan2020PredictionCriticality,
    title = {{Prediction of criticality in patients with severe Covid-19 infection using three clinical features: a machine learning-based prognostic model with clinical data in Wuhan}},
    year = {2020},
    journal = {medRxiv},
    author = {Yan, Li and Zhang, Hai-Tao and Xiao, Yang and Wang, Maolin and Sun, Chuan and Liang, Jing and Li, Shusheng and Zhang, Mingyang and Guo, Yuqi and Xiao, Ying and Tang, Xiuchuan and Cao, Haosen and Tan, Xi and Huang, Niannian and Jiao, Bo and Luo, Ailin and Cao, Zhiguo and Xu, Hui and Yuan, Ye},
    month = {3},
    publisher = {Cold Spring Harbor Laboratory Press},
    url = {http://medrxiv.org/content/early/2020/03/03/2020.02.27.20028027.abstract},
    doi = {10.1101/2020.02.27.20028027}
}

@article{Potash,
    title = {{Predictive Modeling for Public Health: Preventing Childhood Lead Poisoning General Terms}},
    author = {Potash, Eric and Brew, Joe and Loewi, Alexander and Majumdar, Subhabrata and Reece, Andrew and Walsh, Joe and Rozier, Eric and Jorgensen, Emile and Jorgensen@, Emile and Org, Cityofchicago and Mansour, Raed and Ghani, Rayid},
    url = {http://dx.doi.org/10.1145/2783258.2788629.},
    doi = {10.1145/2783258.2788629}
}

@article{Demner-Fushman2016,
    title = {{Preparing a collection of radiology examinations for distribution and retrieval}},
    year = {2016},
    journal = {Journal of the American Medical Informatics Association},
    author = {Demner-Fushman, Dina and Kohli, Marc D. and Rosenman, Marc B. and Shooshan, Sonya E. and Rodriguez, Laritza and Antani, Sameer and Thoma, George R. and McDonald, Clement J.},
    doi = {10.1093/jamia/ocv080},
    keywords = {Abstracting and indexing, Biometric identification, Information storage and retrieval, Medical records, Radiography}
}

@book{Narayanan2006,
    title = {{Preventing stack buffer overflow attacks}},
    year = {2006},
    author = {Narayanan, R.G.L.},
    month = {8},
    publisher = {Google Patents},
    url = {http://www.google.com/patents?hl=en&lr=&vid=USPAT7086088&id=A7x6AAAAEBAJ&oi=fnd&dq=United+States+Patent+%097,086,088&printsec=abstract}
}

@phdthesis{Ojha2009,
    title = {{PRIMEGENSv2: a service based platform using object oriented model view controller design pattern}},
    shorttitle = {PRIMEGENSv2},
    year = {2009},
    author = {Ojha, M.},
    url = {https://mospace.umsystem.edu/xmlui/handle/10355/9654}
}

@article{Smith2007,
    title = {{Principles of secure information flow analysis}},
    year = {2007},
    journal = {Malware Detection},
    author = {Smith, G.},
    pages = {291–307}
}

@article{Lee2011,
    title = {{Prioritizing candidate disease genes by network-based boosting of genome-wide association data}},
    year = {2011},
    journal = {Genome Research},
    author = {Lee, Insuk and Blom, U. Martin and Wang, Peggy I. and Shim, Jung Eun and Marcotte, Edward M.},
    number = {7},
    month = {7},
    pages = {1109--1121},
    volume = {21},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/21536720 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3129253 http://genome.cshlp.org/cgi/doi/10.1101/gr.118992.110},
    doi = {10.1101/gr.118992.110},
    issn = {1088-9051},
    pmid = {21536720}
}

@article{Beaulieu-Jones2017,
    title = {{Privacy-preserving generative deep neural networks support clinical data sharing}},
    year = {2017},
    journal = {doi.org},
    author = {Beaulieu-Jones, Brett K. and Wu, Zhiwei Steven and Williams, Chris and Greene, Casey S.},
    month = {7},
    pages = {159756},
    publisher = {Cold Spring Harbor Laboratory},
    url = {https://www.biorxiv.org/content/early/2017/07/05/159756.1},
    doi = {10.1101/159756}
}

@article{shmulevich2002probabilistic,
    title = {{Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks}},
    year = {2002},
    journal = {Bioinformatics},
    author = {Shmulevich, Ilya and Dougherty, Edward R. and Kim, Seungchan and Zhang, Wei},
    number = {2},
    month = {2},
    pages = {261--274},
    volume = {18},
    publisher = {Oxford University Press},
    url = {https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/18.2.261},
    doi = {10.1093/bioinformatics/18.2.261},
    issn = {1367-4803}
}

@article{Jordan,
    title = {{Probabilistic inference in graphical models}},
    author = {Jordan, Michael I and Weiss, Yair}
}

@article{Ding2015,
    title = {{Probabilistic Label Relation Graphs with Ising Models}},
    year = {2015},
    author = {Ding, Nan and Deng, Jia and Murphy, Kevin and Neven, Hartmut},
    month = {3},
    url = {http://arxiv.org/abs/1503.01428},
    arxivId = {1503.01428}
}

@inproceedings{Hofmann1999,
    title = {{Probabilistic latent semantic analysis}},
    year = {1999},
    author = {Hofmann, Thomas},
    pages = {289–296},
    url = {http://dl.acm.org/citation.cfm?id=2073829 http://arxiv.org/pdf/1301.6705}
}

@article{Mallick2020,
    title = {{Probabilistic Neighbourhood Component Analysis: Sample Efficient Uncertainty Estimation in Deep Learning}},
    year = {2020},
    author = {Mallick, Ankur and Dwivedi, Chaitanya and Kailkhura, Bhavya and Joshi, Gauri and Han, T. Yong-Jin},
    month = {7},
    url = {http://arxiv.org/abs/2007.10800},
    arxivId = {2007.10800}
}

@article{Wolff2019,
    title = {{PROBAST: A Tool to Assess the Risk of Bias and Applicability of Prediction Model Studies}},
    year = {2019},
    journal = {Annals of Internal Medicine},
    author = {Wolff, Robert F. and Moons, Karel G.M. and Riley, Richard D. and Whiting, Penny F. and Westwood, Marie and Collins, Gary S. and Reitsma, Johannes B. and Kleijnen, Jos and Mallett, Sue},
    number = {1},
    month = {1},
    pages = {51},
    volume = {170},
    publisher = {American College of Physicians},
    url = {http://annals.org/article.aspx?doi=10.7326/M18-1376},
    doi = {10.7326/M18-1376},
    issn = {0003-4819}
}

@article{Reas2006,
    title = {{Processing: programming for the media arts}},
    shorttitle = {Processing},
    year = {2006},
    journal = {AI {\&} Society},
    author = {Reas, C. and Fry, B.},
    number = {4},
    pages = {526–538},
    volume = {20},
    url = {http://www.springerlink.com/index/d0g5745510252632.pdf http://hlt.media.mit.edu/dfe_readings/processing.pdf http://link.springer.com/article/10.1007%252Fs00146-006-0050-9?LI=true}
}

@article{Friedman2008,
    title = {{Protecting data on mobile devices: A taxonomy of security threats to mobile computing and review of applicable defenses}},
    shorttitle = {Protecting data on mobile devices},
    year = {2008},
    journal = {Information, Knowledge, Systems Management},
    author = {Friedman, J. and Hoffman, D. V.},
    number = {1},
    pages = {159–180},
    volume = {7},
    url = {http://iospress.metapress.com/index/w024w70063568317.pdf http://iospress.metapress.com/content/w024w70063568317/}
}

@article{Fouta,
    title = {{Protein Interface Prediction using Graph Convolutional Networks}},
    author = {Fout, Alex and Byrd, Jonathon and Shariat, Basir and Ben-Hur, Asa},
    url = {https://papers.nips.cc/paper/7231-protein-interface-prediction-using-graph-convolutional-networks.pdf}
}

@inproceedings{Zhang2017b,
    title = {{Protein-Protein Interaction Extraction Using Attention-Based Convolution Neural Networks}},
    year = {2017},
    booktitle = {Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17},
    author = {Zhang, Hao and Yang, Mary Qu and Feng, Xiaoyue and Yang, William and Tong, Weida and Guan, Renchu},
    pages = {770--771},
    publisher = {ACM Press},
    url = {http://dl.acm.org/citation.cfm?doid=3107411.3110418},
    address = {New York, New York, USA},
    isbn = {9781450347228},
    doi = {10.1145/3107411.3110418},
    keywords = {attention mechanism, convolution neural network, protein-protein interaction, word2vec}
}

@inproceedings{Snell2017Prototypical,
    title = {{Prototypical Networks for Few-shot Learning}},
    year = {2017},
    booktitle = {Neural Information Processing Systems},
    author = {Snell, Jake and Swersky, Kevin and Zemel, Twitter Richard}
}

@inproceedings{Seong2010,
    title = {{PrPl: a decentralized social networking infrastructure}},
    shorttitle = {PrPl},
    year = {2010},
    author = {Seong, S. W. and Seo, J. and Nasielski, M. and Sengupta, D. and Hangal, S. and Teh, S. K. and Chu, R. and Dodson, B. and Lam, M. S.},
    pages = {8},
    url = {http://dl.acm.org/citation.cfm?id=1810939 https://stacks.stanford.edu/file/druid:bv954hs0202/thesis-augmented.pdf}
}

@article{Wagner2020,
    title = {{PTB-XL, a large publicly available electrocardiography dataset}},
    year = {2020},
    journal = {Scientific Data},
    author = {Wagner, Patrick and Strodthoff, Nils and Bousseljot, Ralf Dieter and Kreiseler, Dieter and Lunze, Fatima I. and Samek, Wojciech and Schaeffter, Tobias},
    number = {1},
    month = {12},
    pages = {1--15},
    volume = {7},
    publisher = {Nature Research},
    url = {https://doi.org/10.1038/s41597-020-0495-6},
    doi = {10.1038/s41597-020-0495-6},
    issn = {20524463},
    pmid = {32451379},
    keywords = {Cardiovascular diseases, Data publication and archiving, EKG, Electrocardiography, Machine learning}
}

@techreport{Dernoncourt,
    title = {{PubMed 200k RCT: a Dataset for Sequential Sentence Classification in Medical Abstracts}},
    author = {Dernoncourt, Franck and Lee, Ji Young},
    url = {https://www.ncbi.nlm.},
    arxivId = {arXiv:1710.06071v1}
}

@article{Dernoncourt2017,
    title = {{PubMed 200k RCT: a Dataset for Sequential Sentence Classification in Medical Abstracts}},
    year = {2017},
    author = {Dernoncourt, Franck},
    arxivId = {arXiv:1710.06071v1}
}

@article{Weng2017,
    title = {{Python3 Pytorch reimplementation of CheXNet}},
    year = {2017},
    journal = {GitHub},
    author = {Weng, Xinyu and Zhuang, Nan and Tian, Jingjing and Liu, Yingcheng and Mu, Yadong},
    url = {https://github.com/arnoweng/CheXNet},
    doi = {https://github.com/arnoweng/CheXNet}
}

@article{watkins_q-learning_1992,
    title = {{Q-learning}},
    year = {1992},
    journal = {Machine Learning},
    author = {Watkins, Christopher J. C. H. and Dayan, Peter},
    number = {3-4},
    month = {5},
    pages = {279--292},
    volume = {8},
    url = {http://link.springer.com/article/10.1007/BF00992698 http://link.springer.com/content/pdf/10.1007%252FBF00992698.pdf},
    doi = {10.1007/BF00992698},
    issn = {0885-6125, 1573-0565},
    keywords = {Artificial Intelligence (incl. Robotics), Automation and Robotics, Computing Methodologies, Language Translation and Linguistics, Q-learning, Simulation and Modeling, asynchronous dynamic programming, reinforcement learning, temporal differences},
    language = {en}
}

@misc{Ravkin2004b,
    title = {{Quality measures for imaging-based cellular assays.}},
    year = {2004},
    author = {Ravkin, I}
}

@inproceedings{Hashir2020Lateral,
    title = {{Quantifying the Value of Lateral Views in Deep Learning for Chest X-rays}},
    year = {2020},
    booktitle = {Medical Imaging with Deep Learning},
    author = {Hashir, Mohammad and Bertrand, Hadrien and Cohen, Joseph Paul}
}

@article{Wu2016,
    title = {{Quantitative analysis of ultrasound images for computer-aided diagnosis.}},
    year = {2016},
    journal = {Journal of medical imaging (Bellingham, Wash.)},
    author = {Wu, Jie Ying and Tuomi, Adam and Beland, Michael D and Konrad, Joseph and Glidden, David and Grand, David and Merck, Derek},
    number = {1},
    month = {1},
    pages = {014501},
    volume = {3},
    publisher = {Society of Photo-Optical Instrumentation Engineers},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/26835502 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4725328},
    doi = {10.1117/1.JMI.3.1.014501},
    issn = {2329-4302},
    pmid = {26835502},
    keywords = {computer-aided diagnosis, machine learning, shape analysis, texture analysis, ultrasound}
}

@article{Lockett1992,
    title = {{Quantitative precision of an automated, fluorescence-based image cytometer.}},
    year = {1992},
    journal = {Anal Quant Cytol Histol},
    author = {Lockett, S J and Jacobson, K and Herman, B},
    volume = {14}
}

@misc{Oakden-Rayner2017a,
    title = {{Quick thoughts on ChestXray14, performance claims, and clinical tasks.}},
    year = {2017},
    author = {Oakden-Rayner, Luke},
    url = {https://lukeoakdenrayner.wordpress.com/2017/11/18/quick-thoughts-on-chestxray14-performance-claims-and-clinical-tasks/}
}

@article{Paul2004,
    title = {{Radiologic Pattern of Disease in Patients with Severe Acute Respiratory Syndrome: The Toronto Experience}},
    year = {2004},
    journal = {RadioGraphics},
    author = {Paul, Narinder S. and Roberts, Heidi and Butany, Jagdish and Chung, TaeBong and Gold, Wayne and Mehta, Sangeeta and Konen, Eli and Rao, Anuradha and Provost, Yves and Hong, Harry H. and Zelovitsky, Leon and Weisbrod, Gordon L.},
    number = {2},
    month = {3},
    pages = {553--563},
    volume = {24},
    publisher = {Radiological Society of North America Inc.},
    url = {http://pubs.rsna.org/doi/10.1148/rg.242035193},
    doi = {10.1148/rg.242035193},
    issn = {0271-5333},
    keywords = {Lung, CT, 60.1211, Lung, infection, 60.2199, 60.4134, Respiratory distress syndrome, adult (ARDS), 60.41, Severe acute respiratory syndrome (SARS), 60.2199}
}

@article{RSNA2020COVIDStatement,
    title = {{Radiological Society of North America Expert Consensus Statement on Reporting Chest CT Findings Related to COVID-19. Endorsed by the Society of Thoracic Radiology, the American College of Radiology, and RSNA.}},
    year = {2020},
    journal = {Radiology: Cardiothoracic Imaging},
    author = {Simpson, Scott and Kay, Fernando U. and Abbara, Suhny and Bhalla, Sanjeev and Chung, Jonathan H. and Chung, Michael and Henry, Travis S. and Kanne, Jeffrey P. and Kligerman, Seth and Ko, Jane P. and Litt, Harold},
    publisher = {Radiological Society of North America (RSNA)},
    url = {http://pubs.rsna.org/doi/10.1148/ryct.2020200152},
    doi = {10.1148/ryct.2020200152}
}

@misc{Gichoya2017,
    title = {{Radiologists as Knowledge Experts in a World of Artificial Intelligence (Summary of Radiology{\ldots}}},
    year = {2017},
    author = {Gichoya, Judy},
    url = {https://becominghuman.ai/radiologists-as-knowledge-experts-in-a-world-of-artificial-intelligence-summary-of-radiology-ec63a7002329}
}

@article{Hosseiny2020,
    title = {{Radiology Perspective of Coronavirus Disease 2019 (COVID-19): Lessons From Severe Acute Respiratory Syndrome and Middle East Respiratory Syndrome}},
    year = {2020},
    journal = {American Journal of Roentgenology},
    author = {Hosseiny, Melina and Kooraki, Soheil and Gholamrezanezhad, Ali and Reddy, Sravanthi and Myers, Lee},
    number = {5},
    month = {5},
    pages = {1078--1082},
    volume = {214},
    publisher = {American Roentgen Ray Society},
    url = {https://www.ajronline.org/doi/10.2214/AJR.20.22969},
    doi = {10.2214/AJR.20.22969},
    issn = {0361-803X},
    keywords = {COVID-19, CT scan, Chest, Coronavirus, Outbreak, Pneumonia, Radiography}
}

@article{Breiman2001,
    title = {{Random Forests}},
    year = {2001},
    journal = {Machine Learning},
    author = {Breiman, Leo},
    number = {1},
    month = {10},
    pages = {5--32},
    volume = {45},
    url = {http://link.springer.com/article/10.1023/A%3A1010933404324 http://link.springer.com/article/10.1023/A:1010933404324 http://link.springer.com/content/pdf/10.1023%2FA%3A1010933404324.pdf},
    doi = {10.1023/A:1010933404324},
    issn = {0885-6125, 1573-0565},
    language = {en}
}

@article{ishwaran2008random,
    title = {{Random survival forests}},
    year = {2008},
    journal = {Annals of Applied Statistics},
    author = {Ishwaran, Hemant and Kogalur, Udaya B. and Blackstone, Eugene H. and Lauer, Michael S.},
    number = {3},
    pages = {841--860},
    volume = {2},
    publisher = {JSTOR},
    isbn = {1932-6157},
    doi = {10.1214/08-AOAS169},
    issn = {19326157},
    pmid = {261057900003},
    arxivId = {0811.1645},
    keywords = {Conservation of events, Cumulative hazard function, Ensemble, Out-of-bag, Prediction error, Survival tree}
}

@article{stracuzzi_randomized_2004,
    title = {{Randomized {\{}Variable{\}} {\{}Elimination{\}}}},
    year = {2004},
    journal = {Journal of Machine Learning Research},
    author = {Stracuzzi, David J and Utgoff, Paul E},
    month = {12},
    pages = {1331--1362},
    volume = {5},
    issn = {1532-4435}
}

@inproceedings{Cohen2016,
    title = {{RandomOut: Using a convolutional gradient norm to rescue convolutional filters}},
    year = {2016},
    booktitle = {International Conference on Learning Representations Workshop},
    author = {Cohen, Joseph Paul and Lo, Henry Z. and Ding, Wei},
    month = {2},
    url = {http://arxiv.org/abs/1602.05931},
    arxivId = {1602.05931}
}

@article{Pedersen2016,
    title = {{Ranking factors involved in diabetes remission after bariatric surgery using machine-learning integrating clinical and genomic biomarkers}},
    year = {2016},
    journal = {npj Genomic Medicine},
    author = {Pedersen, Helle Krogh and Gudmundsdottir, Valborg and Pedersen, Mette Krogh and Brorsson, Caroline and Brunak, Søren and Gupta, Ramneek},
    publisher = {Nature},
    url = {http://www.nature.com/articles/npjgenmed201635},
    doi = {10.1038/npjgenmed.2016.35},
    issn = {2056-7944}
}

@inproceedings{chen2009ranking,
    title = {{Ranking measures and loss functions in learning to rank}},
    year = {2009},
    booktitle = {Advances in Neural Information Processing Systems},
    author = {Chen, Wei and Liu, Tie-Yan and Lan, Yanyan and Ma, Zhi-Ming and Li, Hang}
}

@misc{Cohen2016b,
    title = {{Rapid building detection using machine learning}},
    year = {2016},
    booktitle = {Applied Intelligence},
    author = {Cohen, Joseph Paul and Ding, Wei and Kuhlman, Caitlin and Chen, Aijun and Di, Liping},
    pages = {1--15},
    doi = {10.1007/s10489-016-0762-6},
    issn = {15737497},
    keywords = {Building detection, Discrete object detection, Geospatial reflective imagery, Machine learning}
}

@article{Siegle1998,
    title = {{Rates of disagreement in imaging interpretation in a group of community hospitals.}},
    year = {1998},
    journal = {Academic radiology},
    author = {Siegle, Robert L. and Baram, Evelyn M. and Reuter, Stewart R. and Clarke, Ewell A. and Lancaster, Jack L. and McMahan, Alex},
    number = {3},
    month = {3},
    pages = {148--54},
    volume = {5},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/9522880},
    doi = {10.1016/s1076-6332(98)80277-8},
    issn = {1076-6332},
    pmid = {9522880}
}

@misc{Tarun2020Qure,
    title = {{Re-purposing qXR for COVID-19}},
    year = {2020},
    booktitle = {Qure.ai Blog},
    author = {Raj, Tarun},
    url = {http://blog.qure.ai/notes/chest-xray-AI-qxr-for-covid-19}
}

@article{Moncada2011,
    title = {{Reading and interpretation of chest X-ray in adults with community-acquired pneumonia}},
    year = {2011},
    journal = {Brazilian Journal of Infectious Diseases},
    author = {Moncada, Diana Carolina and Rueda, Zulma Vanessa and Mac{\'{i}}as, Antonio and Su{\'{a}}rez, Tatiana and Ortega, Héctor and V{\'{e}}lez, Lázaro Agustín},
    number = {6},
    month = {11},
    pages = {540--546},
    volume = {15},
    doi = {10.1016/S1413-8670(11)70248-3},
    issn = {14138670},
    keywords = {Pneumonia, Radiography, Reproducibility of results, Thoracic}
}

@article{Khan2009ReadingRadiographs,
    title = {{Reading chest radiographs in the critically ill (Part I): Normal chest radiographic appearance, instrumentation and complications from instrumentation}},
    year = {2009},
    journal = {Annals of Thoracic Medicine},
    author = {Khan, Ali Nawaz and Al-Jahdali, Hamdan and Al-Ghanem, Sarah and Gouda, Alaa},
    number = {2},
    month = {7},
    pages = {75--87},
    volume = {4},
    publisher = {Wolters Kluwer -- Medknow Publications},
    doi = {10.4103/1817-1737.49416},
    issn = {18171737}
}

@article{Perner2004,
    title = {{Recognition of airborne fungi spores in digital microscopic images}},
    year = {2004},
    journal = {Proceedings - International Conference on Pattern Recognition},
    author = {Perner, Petra and Perner, Horst and J{\"{a}}nichen, Silke and B{\"{u}}hring, Angela},
    pages = {566--569},
    volume = {3},
    isbn = {0769521282},
    doi = {10.1109/ICPR.2004.1334592},
    issn = {10514651}
}

@article{Karantzalos2009,
    title = {{Recognition-driven two-dimensional competing priors toward automatic and accurate building detection}},
    year = {2009},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Karantzalos, Konstantinos and Paragios, Nikos},
    number = {1},
    pages = {133--144},
    volume = {47},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4682733 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4682733&abstractAccess=no&userType=inst http://users.ntua.gr/karank/img/Karantzalos_Paragios_TGARS08.pdf}
}

@article{LummertzDaRocha2018,
    title = {{Reconstruction of complex single-cell trajectories using CellRouter}},
    year = {2018},
    journal = {Nature Communications},
    author = {Lummertz Da Rocha, Edroaldo and Rowe, R. Grant and Lundin, Vanessa and Malleshaiah, Mohan and Jha, Deepak Kumar and Rambo, Carlos R. and Li, Hu and North, Trista E. and Collins, James J. and Daley, George Q.},
    number = {1},
    month = {12},
    volume = {9},
    publisher = {Nature Publishing Group},
    doi = {10.1038/s41467-018-03214-y},
    issn = {20411723}
}

@article{Parvaresh2008,
    title = {{Recovering sparse signals using sparse measurement matrices in compressed DNA microarrays}},
    year = {2008},
    journal = {IEEE Journal on Selected Topics in Signal Processing},
    author = {Parvaresh, Farzad and Vikalo, Haris and Misra, Sidhant and Hassibi, Babak},
    url = {https://authors.library.caltech.edu/15893/1/Parvaresh2008p2233Ieee_J_Sel_Top_Signa.pdf},
    isbn = {1932-4553},
    doi = {10.1109/JSTSP.2008.924384},
    issn = {19324553},
    keywords = {Compressive sampling, DNA microarrays, Sparse measurements}
}

@article{Simonetto2005,
    title = {{Rectangular building extraction from stereoscopic airborne radar images}},
    year = {2005},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Simonetto, Elisabeth and Oriot, Hélène and Garello, René},
    number = {10},
    pages = {2386–2395},
    volume = {43},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1512409 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1512409&tag=1}
}

@article{Nair2010,
    title = {{Rectified Linear Units Improve Restricted Boltzmann Machines}},
    year = {2010},
    journal = {International Conference on Machine Learning},
    author = {Nair, Vinod and Hinton, Geoffrey E},
    url = {http://machinelearning.wustl.edu/mlpapers/paper_files/icml2010_NairH10.pdf},
    isbn = {9781605589077},
    doi = {10.1.1.165.6419},
    issn = {1935-8237},
    pmid = {22404682},
    arxivId = {1111.6189v1}
}

@article{Maas,
    title = {{Rectifier Nonlinearities Improve Neural Network Acoustic Models}},
    year = {2013},
    journal = {International Conference on Machine Learning},
    author = {Maas, Andrew L and Hannun, Awni Y and Ng, Andrew Y},
    url = {http://web.stanford.edu/~awni/papers/relu_hybrid_icml2013_final.pdf https://web.stanford.edu/~awni/papers/relu_hybrid_icml2013_final.pdf}
}

@article{Mnih2014,
    title = {{Recurrent Models of Visual Attention}},
    year = {2014},
    journal = {Advances in Neural Information Processing Systems},
    author = {Mnih, Volodymyr and Heess, Nicolas and Graves, Alex and Kavukcuoglu, Koray},
    url = {https://papers.nips.cc/paper/5542-recurrent-models-of-visual-attention.pdf http://arxiv.org/abs/1406.6247%5Cnhttp://papers.nips.cc/paper/5542-recurrent-models-of-visual-attention%5Cnhttp://papers.nips.cc/paper/5542-recurrent-models-of-visual-attention.pdf},
    isbn = {078036404X},
    doi = {ng},
    issn = {0157244X},
    arxivId = {1406.6247}
}

@article{Che2018,
    title = {{Recurrent Neural Networks for Multivariate Time Series with Missing Values}},
    year = {2018},
    journal = {Scientific Reports},
    author = {Che, Zhengping and Purushotham, Sanjay and Cho, Kyunghyun and Sontag, David and Liu, Yan},
    number = {1},
    month = {12},
    pages = {6085},
    volume = {8},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/articles/s41598-018-24271-9},
    doi = {10.1038/s41598-018-24271-9},
    issn = {2045-2322},
    keywords = {Computational models, Computer science, Machine learning}
}

@misc{_refine_,
    title = {{Refine, reuse and request data {\{}{\textbackslash}textbar{\}} {\{}ScraperWiki{\}}}},
    url = {http://scraperwiki.com/}
}

@article{Zhu1996,
    title = {{Region competition: Unifying snakes, region growing, and Bayes/MDL for multiband image segmentation}},
    shorttitle = {Region competition},
    year = {1996},
    journal = {Pattern Analysis and Machine Intelligence, IEEE Transactions on},
    author = {Zhu, Song Chun and Yuille, Alan},
    number = {9},
    pages = {884–900},
    volume = {18},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=537343 http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.48.6641&rep=rep1&type=pdf http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=537343&abstractAccess=no&userType=inst}
}

@article{liu2015regnetwork,
    title = {{RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse}},
    year = {2015},
    journal = {Database: The Journal of Biological Databases and Curation},
    author = {Liu, Zhi-Ping and Wu, Canglin and Miao, Hongyu and Wu, Hulin},
    publisher = {Oxford University Press},
    doi = {10.1093/database/bav095}
}

@article{,
    title = {{Regression models and life tables}},
    year = {1972},
    journal = {Journal of the Royal Statistical Society},
    author = {Cox, D. R.},
    number = {2},
    pages = {187--220},
    volume = {34}
}

@article{Tibshirani1996,
    title = {{Regression shrinkage and selection via the lasso}},
    year = {1996},
    journal = {Journal of the Royal Statistical Society. Series B (Methodological)},
    author = {Tibshirani, Robert},
    pages = {267–288},
    url = {http://www.jstor.org/stable/2346178}
}

@inproceedings{Kushmerick1999,
    title = {{Regression testing for wrapper maintenance}},
    year = {1999},
    author = {Kushmerick, N. and {others}},
    pages = {74–284},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.42.3288&rep=rep1&type=pdf}
}

@inproceedings{kushmerick_regression_1999,
    title = {{Regression testing for wrapper maintenance}},
    year = {1999},
    booktitle = {Proceedings of the National Conference on Artificial Intelligence},
    author = {Kushmerick, N and {others}}
}

@article{Mollaysa,
    title = {{Regularising Non-linear Models Using Feature Side-information}},
    author = {Mollaysa, Amina and Strasser, Pablo and Kalousis, Alexandros},
    url = {https://pdfs.semanticscholar.org/55b2/f1923dace6c0cb90ec89387e84076323433d.pdf}
}

@inproceedings{Evgeniou2004,
    title = {{Regularized multi-task learning}},
    year = {2004},
    booktitle = {International Conference on Knowledge Discovery and Data Mining},
    author = {Evgeniou, Theodoros and Pontil, Massimiliano},
    publisher = {ACM Press},
    url = {http://portal.acm.org/citation.cfm?doid=1014052.1014067},
    address = {New York, New York, USA},
    isbn = {1581138889},
    doi = {10.1145/1014052.1014067},
    keywords = {kernel methods, multi--task learning, regularization, support vector machines}
}

@book{Sutton1998,
    title = {{Reinforcement learning: An introduction}},
    shorttitle = {Reinforcement learning},
    year = {1998},
    author = {Sutton, Richard S. and Barto, Andrew G.},
    publisher = {MIT press},
    url = {http://books.google.com/books?hl=en&lr=&id=CAFR6IBF4xYC&oi=fnd&pg=PA3&dq=Reinforcement+Learning:An+Introduction+sutton&ots=eaPYMVc4YJ&sig=qoYY5eNNC8kYaayQB7nb0RGxVpc http://books.google.com/books?hl=en&lr=&id=CAFR6IBF4xYC&oi=fnd&pg=PA3&dq=Reinforcement+Le}
}

@book{sutton_reinforcement_1998,
    title = {{Reinforcement learning: {\{}An{\}} introduction}},
    shorttitle = {Reinforcement learning},
    year = {1998},
    author = {Sutton, Richard S and Barto, Andrew G},
    publisher = {MIT press},
    url = {http://books.google.com/books?hl=en&lr=&id=CAFR6IBF4xYC&oi=fnd&pg=PA3&dq=Reinforcement+Learning:An+Introduction+sutton&ots=eaPYMVc4YJ&sig=qoYY5eNNC8kYaayQB7nb0RGxVpc}
}

@article{DavidJ.Brown2010,
    title = {{Repositories and journals: are they in conflict?}},
    shorttitle = {Repositories and journals},
    year = {2010},
    journal = {Aslib Proceedings},
    author = {{David J. Brown}},
    number = {2},
    month = {3},
    pages = {112--143},
    volume = {62},
    url = {http://www.emeraldinsight.com/doi/abs/10.1108/00012531011034955},
    doi = {10.1108/00012531011034955},
    issn = {0001-253X}
}

@article{Bengio2013,
    title = {{Representation learning: a review and new perspectives.}},
    shorttitle = {Representation learning},
    year = {2013},
    journal = {IEEE transactions on pattern analysis and machine intelligence},
    author = {Bengio, Yoshua and Courville, Aaron and Vincent, Pascal},
    number = {8},
    pages = {1798--828},
    volume = {35},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6472238 http://arxiv.org/pdf/1206.5538 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6472238&tag=1 http://www.ncbi.nlm.nih.gov/pubmed/23787338},
    isbn = {0162-8828 VO - 35},
    doi = {10.1109/TPAMI.2013.50},
    issn = {1939-3539},
    pmid = {23787338},
    arxivId = {1206.5538},
    keywords = {Algorithms, Artificial Intelligence, Artificial Intelligence: trends, Humans, Neural Networks (Computer)}
}

@article{Leung2001,
    title = {{Representing and recognizing the visual appearance of materials using three-dimensional textons}},
    year = {2001},
    journal = {International Journal of Computer Vision},
    author = {Leung, Thomas and Malik, Jitendra},
    number = {1},
    pages = {29–44},
    volume = {43},
    url = {http://link.springer.com/article/10.1023/A:1011126920638 http://www.cs.berkeley.edu/~malik/papers/LM-3dtexton.pdf}
}

@article{Tian2020fewshot,
    title = {{Rethinking Few-Shot Image Classification: a Good Embedding Is All You Need?}},
    year = {2020},
    author = {Tian, Yonglong and Wang, Yue and Krishnan, Dilip and Tenenbaum, Joshua B and Isola, Phillip},
    url = {http://github.com/WangYueFt/ http://arxiv.org/abs/2003.11539},
    arxivId = {2003.11539}
}

@inproceedings{Szegedy2015a,
    title = {{Rethinking the Inception Architecture for Computer Vision}},
    year = {2016},
    booktitle = {Conference on Computer Vision and Pattern Recognition},
    author = {Szegedy, Christian and Vanhoucke, Vincent and Ioffe, Sergey and Shlens, Jonathon and Wojna, Zbigniew},
    url = {http://arxiv.org/abs/1512.00567 http://www.cv-foundation.org/openaccess/content_cvpr_2016/html/Szegedy_Rethinking_the_Inception_CVPR_2016_paper.html},
    isbn = {9781617796029},
    doi = {10.1002/2014GB005021},
    issn = {08866236},
    pmid = {8190083},
    arxivId = {1512.00567}
}

@inproceedings{Almazroa2018RIGA,
    title = {{Retinal fundus images for glaucoma analysis: the RIGA dataset}},
    year = {2018},
    booktitle = {Medical Imaging 2018: Imaging Informatics for Healthcare, Research, and Applications},
    author = {Almazroa, Ahmed A. and Alodhayb, Sami and Osman, Essameldin and Ramadan, Eslam and Hummadi, Mohammed and Dlaim, Mohammed and Alkatee, Muhannad and Raahemifar, Kaamran and Lakshminarayanan, Vasudevan},
    editor = {Zhang, Jianguo and Chen, Po-Hao},
    month = {3},
    pages = {8},
    publisher = {SPIE},
    url = {https://www.spiedigitallibrary.org/conference-proceedings-of-spie/10579/2293584/Retinal-fundus-images-for-glaucoma-analysis-the-RIGA-dataset/10.1117/12.2293584.full},
    isbn = {9781510616479},
    doi = {10.1117/12.2293584}
}

@article{Sun2015,
    title = {{Return of Frustratingly Easy Domain Adaptation}},
    year = {2015},
    author = {Sun, Baochen and Feng, Jiashi and Saenko, Kate},
    month = {11},
    url = {http://arxiv.org/abs/1511.05547},
    arxivId = {1511.05547}
}

@article{Augasta2012,
    title = {{Reverse engineering the neural networks for rule extraction in classification problems}},
    year = {2012},
    journal = {Neural Processing Letters},
    author = {Gethsiyal Augasta, M. and Kathirvalavakumar, T.},
    number = {2},
    month = {4},
    pages = {131--150},
    volume = {35},
    url = {http://link.springer.com/article/10.1007/s11063-011-9207-8 http://link.springer.com/article/10.1007%2Fs11063-011-9207-8 http://link.springer.com/content/pdf/10.1007%2Fs11063-011-9207-8.pdf},
    doi = {10.1007/s11063-011-9207-8},
    issn = {13704621},
    keywords = {Classification, Neural networks, Pedagogical, Pruning, Reverse engineering, Rule extraction},
    language = {en}
}

@article{Yang2016,
    title = {{Revisiting Semi-Supervised Learning with Graph Embeddings}},
    year = {2016},
    author = {Yang, Zhilin and Cohen, William W and Salakhutdinov, Ruslan},
    url = {https://arxiv.org/pdf/1603.08861.pdf}
}

@inproceedings{Roth2020dml,
    title = {{Revisiting Training Strategies and Generalization Performance in Deep Metric Learning}},
    year = {2020},
    booktitle = {International Conference of Machine Learning},
    author = {Roth, Karsten and Milbich, Timo and Sinha, Samarth and Gupta, Prateek and Ommer, Björn and Cohen, Joseph Paul},
    month = {2},
    url = {http://arxiv.org/abs/2002.08473},
    arxivId = {2002.08473}
}

@inproceedings{Ross2017rrr,
    title = {{Right for the Right Reasons: Training Differentiable Models by Constraining their Explanations}},
    year = {2017},
    booktitle = {International Joint Conference on Artificial Intelligence},
    author = {Ross, Andrew and Hughes, Michael C and Doshi-Velez, Finale},
    url = {https://github.com/dtak/rrr.},
    arxivId = {1703.03717v2}
}

@misc{Dahse2010,
    title = {{RIPS – A static source code analyser for vulnerabilities in PHP scripts}},
    year = {2010},
    author = {Dahse, Johannes},
    month = {8},
    url = {http://websec.wordpress.com/2010/06/11/rips-a-static-source-code-analyser-for-vulnerabilities-in-php-scripts/}
}

@article{Kogenaru2012,
    title = {{RNA-seq and microarray complement each other in transcriptome profiling}},
    year = {2012},
    journal = {BMC Genomics},
    author = {Kogenaru, Sunitha and Qing, Yan and Guo, Yinping and Wang, Nian},
    number = {1},
    month = {11},
    pages = {629},
    volume = {13},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/23153100 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3534599 http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-13-629},
    doi = {10.1186/1471-2164-13-629},
    issn = {1471-2164},
    pmid = {23153100}
}

@article{Kogenaru2012a,
    title = {{RNA-seq and microarray complement each other in transcriptome profiling.}},
    year = {2012},
    journal = {BMC genomics},
    author = {Kogenaru, Sunitha and Qing, Yan and Guo, Yinping and Wang, Nian},
    month = {11},
    pages = {629},
    volume = {13},
    publisher = {BioMed Central},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/23153100 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3534599},
    doi = {10.1186/1471-2164-13-629},
    issn = {1471-2164},
    pmid = {23153100}
}

@article{Wheeler2004,
    title = {{RNAi living-cell microarrays for loss-of-function screens in Drosophila melanogastercells.}},
    year = {2004},
    journal = {Nat Methods},
    author = {Wheeler, D B and Bailey, S N and Guertin, D A and Carpenter, A E and Higgins, C O and Sabatini, D M},
    volume = {1},
    url = {http://dx.doi.org/10.1038/nmeth711},
    doi = {10.1038/nmeth711}
}

@article{Tupin2002,
    title = {{Road detection in dense urban areas using SAR imagery and the usefulness of multiple views}},
    year = {2002},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Tupin, Florence and Houshmand, Bijan and Datcu, Mihai},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1166599 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=1166599&url=http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1166599 http://perso.telecom-paristech.fr/~tupin/NEW_PAGE/NEW}
}

@article{Song2004,
    title = {{Road extraction using SVM and image segmentation}},
    year = {2004},
    journal = {Photogrammetric engineering and remote sensing},
    author = {Song, Mingjun and Civco, Daniel},
    number = {12},
    pages = {1365–1371},
    volume = {70},
    url = {http://asprs.org/a/publications/pers/2004journal/december/2004_dec_1365-1371.pdf}
}

@inproceedings{Crescenzi2001,
    title = {{Roadrunner: Towards automatic data extraction from large web sites}},
    year = {2001},
    author = {Crescenzi, V. and Mecca, G. and Merialdo, P. and {others}},
    pages = {109–118}
}

@inproceedings{crescenzi_roadrunner:_2001,
    title = {{Roadrunner: Towards automatic data extraction from large web sites}},
    year = {2001},
    booktitle = {International Conference on Very Large Data Bases},
    author = {Crescenzi, V and Mecca, G and Merialdo, P and {others}}
}

@article{Muller2005,
    title = {{Robust building detection in aerial images}},
    year = {2005},
    journal = {International Archives of Photogrammetry and Remote Sensing},
    author = {M{\"{u}}ller, Sönke and Zaum, Daniel Wilhelm},
    pages = {143--148},
    url = {http://www.isprs.org/proceedings/XXXVI/3-W24/papers/CMRT05_Mueller_Zaum.pdf}
}

@article{Viola2004a,
    title = {{Robust real-time face detection}},
    year = {2004},
    journal = {International journal of computer vision},
    author = {Viola, Paul and Jones, Michael J.},
    url = {http://link.springer.com/article/10.1023/B:VISI.0000013087.49260.fb http://www.vision.rwth-aachen.de/teaching/cvws08/additional/viola-facedetection-ijcv04.pdf},
    issn = {0920-5691}
}

@article{Lee2018,
    title = {{Robust Tumor Localization with Pyramid Grad-CAM}},
    year = {2016},
    author = {Lee, Sungmin and Lee, Jangho and Lee, Jungbeom and Park, Chul-Kee and Yoon, Sungroh},
    url = {https://arxiv.org/pdf/1805.11393.pdf}
}

@article{Myllymaki2002a,
    title = {{Robust web data extraction with xml path expressions}},
    year = {2002},
    journal = {IBM Research Report},
    author = {Myllymaki, J. and Jackson, J.},
    volume = {23},
    url = {http://domino.watson.ibm.com/library/cyberdig.nsf/papers/6DF104E2F308E4CF85256BCE004F1872/$File/RJ10245.pdf}
}

@article{Myllymaki2002,
    title = {{Robust Web Data Extraction with XML Path Expressions}},
    year = {2002},
    journal = {IBM Research Report},
    author = {Myllymaki, J. and Jackson, J. M.J},
    volume = {23},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.130.2424&rep=rep1&type=pdf http://domino.watson.ibm.com/library/cyberdig.nsf/papers/6DF104E2F308E4CF85256BCE004F1872/$File/RJ10245.pdf}
}

@article{myllymaki_robust_2002,
    title = {{Robust web data extraction with xml path expressions}},
    year = {2002},
    journal = {IBM Research Report},
    author = {Myllymaki, J and Jackson, J}
}

@article{jackson_robust_,
    title = {{Robust Web Data Extraction with {\{}XML{\}} Path Expressions}},
    author = {Jackson, J M J}
}

@article{jackson_robust_b,
    title = {{Robust Web Data Extraction with {\{}XML{\}} Path Expressions}},
    year = {2002},
    journal = {IBM Research Report},
    author = {Jackson, J. M J and Myllymaki, J. and Jackson, J. M J},
    url = {http://domino.watson.ibm.com/library/cyberdig.nsf/papers/6DF104E2F308E4CF85256BCE004F1872/$File/RJ10245.pdf}
}

@article{Dalvi2009,
    title = {{Robust Web Extraction : An Approach Based on a Probabilistic Tree-Edit Model}},
    shorttitle = {Robust web extraction},
    year = {2009},
    journal = {Sigmod},
    author = {Dalvi, Nilesh and Bohannon, Philip and Sha, Fei},
    url = {http://portal.acm.org/citation.cfm?id=1559882},
    isbn = {9781605585512},
    doi = {10.1145/1559845.1559882},
    keywords = {all or part of, is granted without fee, or hard copies of, permission to make digital, personal or classroom use, probabilistic tree-edit model, provided that copies are, this work for, wrappers, xpath}
}

@inproceedings{dalvi_robust_2009,
    title = {{Robust web extraction: an approach based on a probabilistic tree-edit model}},
    shorttitle = {Robust web extraction},
    year = {2009},
    booktitle = {International Conference on Management of Data},
    author = {Dalvi, N and Bohannon, P and Sha, F}
}

@inproceedings{dalvi_robust_2009b,
    title = {{Robust web extraction: an approach based on a probabilistic tree-edit model}},
    shorttitle = {Robust web extraction},
    year = {2009},
    booktitle = {International Conference on Management of Data},
    author = {Dalvi, Nilesh and Bohannon, Philip and Sha, Fei},
    url = {http://portal.acm.org/citation.cfm?id=1559882},
    isbn = {9781605585512},
    doi = {10.1145/1559845.1559882},
    keywords = {all or part of, is granted without fee, or hard copies of, permission to make digital, personal or classroom use, probabilistic tree-edit model, provided that copies are, this work for, wrappers, xpath}
}

@inproceedings{Collins2016,
    title = {{Robust, Real-Time, Dense and Deformable 3D Organ Tracking in Laparoscopic Videos}},
    year = {2016},
    author = {Collins, Toby and Bartoli, Adrien and Bourdel, Nicolas and Canis, Michel},
    month = {10},
    pages = {404--412},
    publisher = {Springer, Cham},
    url = {http://link.springer.com/10.1007/978-3-319-46720-7_47},
    doi = {10.1007/978-3-319-46720-7{\_}47}
}

@inproceedings{Veeling2018PCAM,
    title = {{Rotation Equivariant CNNs for Digital Pathology}},
    year = {2018},
    booktitle = {Medical Image Computing {\&} Computer Assisted Intervention (MICCAI)},
    author = {Veeling, Bastiaan S. and Linmans, Jasper and Winkens, Jim and Cohen, Taco and Welling, Max},
    month = {6},
    url = {http://arxiv.org/abs/1806.03962},
    arxivId = {1806.03962}
}

@article{Li2004a,
    title = {{Rover localization and landing-site mapping technology for the 2003 Mars Exploration Rover Mission}},
    year = {2004},
    journal = {Photogrammetric engineering and remote sensing},
    author = {Li, R. and Di, K. and Matthies, L. H and Arvidson, R. E and Folkner, W. M and Archinal, B. A},
    number = {1},
    pages = {77–90},
    volume = {70},
    issn = {0099-1112}
}

@article{Jacobsson2005,
    title = {{Rule Extraction from Recurrent Neural Networks: A Taxonomy and Review}},
    shorttitle = {Rule Extraction from Recurrent Neural Networks},
    year = {2005},
    journal = {Neural Computation},
    author = {Jacobsson, Henrik},
    number = {6},
    month = {6},
    pages = {1223--1263},
    volume = {17},
    url = {http://dx.doi.org/10.1162/0899766053630350 http://www.mitpressjournals.org/doi/abs/10.1162/0899766053630350#.VGAMFVtT7Kk http://www.mitpressjournals.org/doi/pdf/10.1162/0899766053630350#.VGAMFVtT7Kk http://www.mitpressjournals.org/doi/abs/10.1162/08997660},
    isbn = {0899766053630350},
    doi = {10.1162/0899766053630350},
    issn = {0899-7667}
}

@article{Patro2014,
    title = {{Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.}},
    year = {2014},
    journal = {Nature biotechnology},
    author = {Patro, Rob and Mount, Stephen M and Kingsford, Carl},
    number = {5},
    pages = {462--4},
    volume = {32},
    publisher = {NIH Public Access},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/24752080 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4077321},
    doi = {10.1038/nbt.2862},
    issn = {1546-1696},
    pmid = {24752080}
}

@inproceedings{Viviano2020,
    title = {{Saliency is a Possible Red Herring When Diagnosing Poor Generalization}},
    year = {2020},
    booktitle = {International Conference on Learning Representations (ICLR)},
    author = {Viviano, Joseph D. and Simpson, Becks and Dutil, Francis and Bengio, Yoshua and Cohen, Joseph Paul},
    url = {http://arxiv.org/abs/1910.00199},
    arxivId = {1910.00199}
}

@article{DeRidder1997,
    title = {{Sammon's mapping using neural networks: a comparison}},
    shorttitle = {Sammon's mapping using neural networks},
    year = {1997},
    journal = {Pattern Recognition Letters},
    author = {De Ridder, Dick and Duin, Robert PW},
    url = {http://www.sciencedirect.com/science/article/pii/S0167865597000937 http://homepage.tudelft.nl/a9p19/papers/prl_97_sammon.pdf}
}

@incollection{Nowak2006,
    title = {{Sampling strategies for bag-of-features image classification}},
    year = {2006},
    author = {Nowak, Eric and Jurie, Frédéric and Triggs, Bill},
    pages = {490–503},
    publisher = {Springer},
    url = {http://link.springer.com/chapter/10.1007/11744085_38 http://eprints.pascal-network.org/archive/00002371/01/eccv06.pdf http://lear.inrialpes.fr/software}
}

@inproceedings{Adebayo2018SanityChecks,
    title = {{Sanity Checks for Saliency Maps}},
    year = {2018},
    booktitle = {Neural Information Processing Systems},
    author = {Adebayo, Julius and Gilmer, Justin and Muelly, Michael and Goodfellow, Ian and Hardt, Moritz and Kim, Been},
    publisher = {Neural information processing systems foundation},
    url = {http://arxiv.org/abs/1810.03292},
    arxivId = {1810.03292}
}

@article{Voigt2007,
    title = {{Satellite image analysis for disaster and crisis-management support}},
    year = {2007},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Voigt, Stefan and Kemper, Thomas and Riedlinger, Torsten and Kiefl, Ralph and Scholte, Klaas and Mehl, Harald},
    number = {6},
    pages = {1520–1528},
    volume = {45},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4215094 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4215094&abstractAccess=no&userType=inst}
}

@article{Rajkomar2018,
    title = {{Scalable and accurate deep learning for electronic health records}},
    year = {2018},
    author = {Rajkomar, Alvin and Oren, Eyal and Chen, Kai and Dai, Andrew M. and Hajaj, Nissan and Liu, Peter J. and Liu, Xiaobing and Sun, Mimi and Sundberg, Patrik and Yee, Hector and Zhang, Kun and Duggan, Gavin E. and Flores, Gerardo and Hardt, Michaela and Irvine, Jamie and Le, Quoc and Litsch, Kurt and Marcus, Jake and Mossin, Alexander and Tansuwan, Justin and Wang, De and Wexler, James and Wilson, Jimbo and Ludwig, Dana and Volchenboum, Samuel L. and Chou, Katherine and Pearson, Michael and Madabushi, Srinivasan and Shah, Nigam H. and Butte, Atul J. and Howell, Michael and Cui, Claire and Corrado, Greg and Dean, Jeff},
    month = {1},
    url = {http://arxiv.org/abs/1801.07860 http://dx.doi.org/10.1038/s41746-018-0029-1},
    doi = {10.1038/s41746-018-0029-1},
    arxivId = {1801.07860}
}

@article{Dai2017,
    title = {{SCAN: Structure Correcting Adversarial Network for Organ Segmentation in Chest X-rays}},
    year = {2017},
    author = {Dai, Wei and Doyle, Joseph and Liang, Xiaodan and Zhang, Hao and Dong, Nanqing and Li, Yuan and Xing, Eric P.},
    month = {3},
    url = {http://arxiv.org/abs/1703.08770},
    arxivId = {1703.08770}
}

@article{Mabe2009,
    title = {{Scholarly Publishing}},
    year = {2009},
    journal = {European Review},
    author = {Mabe, Michael A.},
    number = {01},
    month = {2},
    pages = {3–22},
    volume = {17},
    url = {http://journals.cambridge.org/article_S1062798709000532 http://journals.cambridge.org/action/displayAbstract?fromPage=online&aid=4324612&fileId=S1062798709000532 http://journals.cambridge.org/action/displayFulltext?type=1&fid=4324620&jid=ERW&volumeId=17&i},
    doi = {10.1017/S1062798709000532},
    issn = {1474-0575}
}

@misc{NationalScienceBoard2016,
    title = {{Science and Engineering Indicators}},
    year = {2016},
    author = {{National Science Board}},
    url = {https://nsf.gov/statistics/2016/nsb20161/#/help},
    institution = {National Science Foundation},
    doi = {NSB-2016-1}
}

@article{scikit-learn,
    title = {{Scikit-learn: Machine Learning in Python}},
    year = {2011},
    journal = {Journal of Machine Learning Research},
    author = {Pedregosa, F and Varoquaux, G and Gramfort, A and Michel, V and Thirion, B and Grisel, O and Blondel, M and Prettenhofer, P and Weiss, R and Dubourg, V and Vanderplas, J and Passos, A and Cournapeau, D and Brucher, M and Perrot, M and Duchesnay, E},
    pages = {2825--2830},
    volume = {12}
}

@article{Resnick2009,
    title = {{Scratch: programming for all}},
    shorttitle = {Scratch},
    year = {2009},
    journal = {Commun. ACM},
    author = {Resnick, Mitchel and Maloney, John and Monroy-Hern{\'{a}}ndez, Andrés and Rusk, Natalie and Eastmond, Evelyn and Brennan, Karen and Millner, Amon and Rosenbaum, Eric and Silver, Jay and Silverman, Brian and Kafai, Yasmin},
    number = {11},
    month = {11},
    pages = {60–67},
    volume = {52},
    url = {http://doi.acm.org/10.1145/1592761.1592779 http://dl.acm.org/ft_gateway.cfm?id=1592779&type=pdf},
    doi = {10.1145/1592761.1592779},
    issn = {0001-0782}
}

@article{DeGomezAna2006,
    title = {{Seasonal distribution of Alternaria, Aspergillus, Cladosporium and penicillium species isolated in homes of fungal allergic patients}},
    year = {2006},
    journal = {Journal of Investigational Allergology and Clinical Immunology},
    author = {De Gomez Ana, S. and Torres-Rodriguez, Josep M. and Alvarado Ramorez, E. and Mojal Garcia, S. and Belmonte-Soler, J.},
    number = {6},
    pages = {357--363},
    volume = {16},
    isbn = {1018-9068},
    issn = {10189068},
    pmid = {17153883},
    keywords = {Alternaria, Aspergillus, Cladosporium, Fungal allergy, Indoor seasonal distribution, Penicillium}
}

@article{Ye2008,
    title = {{Secure Computer and Network Systems}},
    year = {2008},
    journal = {John Wiley{\&} Sons, Ltd},
    author = {Ye, N.},
    url = {http://onlinelibrary.wiley.com/doi/10.1002/9780470023273.fmatter/summary}
}

@techreport{Bell1973,
    title = {{Secure computer systems: Mathematical foundations}},
    shorttitle = {Secure computer systems},
    year = {1973},
    author = {Bell, D. E},
    url = {http://oai.dtic.mil/oai/oai?verb=getRecord&metadataPrefix=html&identifier=AD0770768},
    institution = {DTIC Document}
}

@techreport{Abbott1976,
    title = {{Security analysis and enhancements of computer operating systems}},
    year = {1976},
    author = {Abbott, R. P},
    url = {http://oai.dtic.mil/oai/oai?verb=getRecord&metadataPrefix=html&identifier=ADA436876},
    institution = {DTIC Document}
}

@article{Xue2017,
    title = {{SegAN: Adversarial Network with Multi-scale {\$}L{\_}1{\$} Loss for Medical Image Segmentation}},
    year = {2017},
    author = {Xue, Yuan and Xu, Tao and Zhang, Han and Long, Rodney and Huang, Xiaolei},
    month = {6},
    url = {http://arxiv.org/abs/1706.01805},
    arxivId = {1706.01805}
}

@article{Tang2020COVIDSegmentation,
    title = {{Segmentation model of the opacity regions in the chest X-rays of the Covid-19 patients in the us rural areas and the application to the disease severity}},
    year = {2020},
    journal = {medRxiv},
    author = {Tang, Haiming and Sun, Nanfei and Li, Yi},
    month = {10},
    pages = {2020.10.19.20215483},
    publisher = {Cold Spring Harbor Laboratory Press},
    url = {https://doi.org/10.1101/2020.10.19.20215483},
    doi = {10.1101/2020.10.19.20215483}
}

@article{OrtizdeSolorzano1999,
    title = {{Segmentation of confocal microscope images of cell nuclei in thick tissue sections.}},
    year = {1999},
    journal = {J Microsc Oxford},
    author = {de Solorzano, C and Rodriguez, E G and Jones, A and Pinkel, D and Gray, J W and Sudar, D and Lockett, S J},
    volume = {193},
    url = {http://dx.doi.org/10.1046/j.1365-2818.1999.00463.x},
    doi = {10.1046/j.1365-2818.1999.00463.x}
}

@inproceedings{Weiss1999,
    title = {{Segmentation using eigenvectors: a unifying view}},
    shorttitle = {Segmentation using eigenvectors},
    year = {1999},
    author = {Weiss, Yair},
    pages = {975–982},
    volume = {2},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=790354 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=790354&abstractAccess=no&userType=inst http://lagis-vi.univ-lille1.fr/~lm/classpec/publi_classif/%5B3%5D Weiss.pdf}
}

@article{Badrinarayanan2017,
    title = {{SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation}},
    year = {2017},
    journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    author = {Badrinarayanan, Vijay and Kendall, Alex and Cipolla, Roberto},
    number = {12},
    month = {12},
    pages = {2481--2495},
    volume = {39},
    url = {http://ieeexplore.ieee.org/document/7803544/},
    doi = {10.1109/TPAMI.2016.2644615},
    issn = {0162-8828}
}

@inproceedings{Guo2007,
    title = {{Semantic Feature Selection for Object Discovery in High-Resolution Remote Sensing Imagery}},
    year = {2007},
    author = {Guo, Dihua and Xiong, Hui and Atluri, Vijay and Adam, Nabil},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download;jsessionid=8964217F649ACCE2D7A65916752363AD?doi=10.1.1.80.5366&rep=rep1&type=pdf http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.80.5366}
}

@misc{Tousch2012,
    title = {{Semantic hierarchies for image annotation: A survey}},
    shorttitle = {Semantic hierarchies for image annotation},
    year = {2012},
    booktitle = {Pattern Recognition},
    author = {Tousch, Anne Marie and Herbin, St??phane and Audibert, Jean Yves},
    number = {1},
    pages = {333--345},
    volume = {45},
    url = {http://www.sciencedirect.com/science/article/pii/S0031320311002652 http://www.researchgate.net/publication/220601849_Semantic_hierarchies_for_image_annotation_A_survey/file/79e4150983d72d609f.pdf},
    isbn = {0031-3203},
    doi = {10.1016/j.patcog.2011.05.017},
    issn = {00313203},
    keywords = {Image annotation, Image retrieval, Semantic description, Structured vocabulary}
}

@article{Luc,
    title = {{Semantic Segmentation using Adversarial Networks}},
    author = {Luc, Pauline and Couprie, Camille and Chintala, Soumith and Verbeek, Jakob},
    url = {https://arxiv.org/pdf/1611.08408.pdf}
}

@article{Souly,
    title = {{Semi Supervised Semantic Segmentation Using Generative Adversarial Network}},
    author = {Souly, Nasim and Spampinato, Concetto and Shah, Mubarak},
    url = {http://openaccess.thecvf.com/content_ICCV_2017/papers/Souly__Semi_Supervised_ICCV_2017_paper.pdf}
}

@inproceedings{Zhang2017a,
    title = {{Semi-supervised Assessment of Incomplete LV Coverage in Cardiac MRI Using Generative Adversarial Nets}},
    year = {2017},
    booktitle = {Workshop on Simulation and Synthesis in Medical Imaging},
    author = {Zhang, Le and Gooya, Ali and Frangi, Alejandro F.},
    month = {9},
    url = {http://link.springer.com/10.1007/978-3-319-68127-6_7},
    doi = {10.1007/978-3-319-68127-6{\_}7}
}

@article{Kipf2016,
    title = {{Semi-Supervised Classification with Graph Convolutional Networks}},
    year = {2016},
    journal = {International Conference on Learning Representations},
    author = {Kipf, Thomas N. and Welling, Max},
    url = {http://arxiv.org/abs/1609.02907},
    arxivId = {1609.02907}
}

@article{Kingma2014,
    title = {{Semi-Supervised Learning with Deep Generative Models}},
    year = {2014},
    journal = {arXiv.org},
    author = {Kingma, Diederik P. and Rezende, Danilo J. and Mohamed, Shakir and Welling, Max},
    month = {6},
    volume = {cs.LG},
    url = {http://arxiv.org/abs/1406.5298},
    arxivId = {arXiv:1406.5298v1}
}

@article{Cohen2015a,
    title = {{Semi-Supervised Web Wrapper Repair via Recursive Tree Matching}},
    year = {2015},
    journal = {arXiv:1505.01303 [cs]},
    author = {Cohen, Joseph Paul and Ding, Wei and Bagherjeiran, Abraham},
    month = {5},
    url = {http://arxiv.org/abs/1505.01303 http://www.arxiv.org/pdf/1505.01303.pdf},
    arxivId = {1505.01303}
}

@article{Izquierdo-Verdiguier2014,
    title = {{Semisupervised kernel feature extraction for remote sensing image analysis}},
    year = {2014},
    journal = {IEEE Transactions on Geoscience and Remote Sensing},
    author = {Izquierdo-Verdiguier, Emma and Gomez-Chova, Luis and Bruzzone, Lorenzo and Camps-Valls, Gustavo},
    number = {9},
    pages = {5567--5578},
    volume = {52},
    url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=6695802},
    isbn = {0196-2892},
    doi = {10.1109/TGRS.2013.2290372},
    issn = {01962892},
    keywords = {Biophysical parameter estimation, classification, clustering, feature extraction, generative kernels, kernel methods, partial least squares (PLS), principal component analysis (PCA), semisupervised learning}
}

@article{li2017sep,
    title = {{SEP-Nets: Small and effective pattern networks}},
    year = {2017},
    journal = {arXiv preprint arXiv:1706.03912},
    author = {Li, Zhe and Wang, Xiaoyu and Lv, Xutao and Yang, Tianbao}
}

@article{Sun2017,
    title = {{Sequence-based prediction of protein protein interaction using a deep-learning algorithm}},
    year = {2017},
    journal = {BMC Bioinformatics},
    author = {Sun, Tanlin and Zhou, Bo and Lai, Luhua and Pei, Jianfeng},
    number = {1},
    month = {12},
    pages = {277},
    volume = {18},
    publisher = {BioMed Central},
    url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1700-2},
    doi = {10.1186/s12859-017-1700-2},
    issn = {1471-2105},
    keywords = {Algorithms, Bioinformatics, Computational Biology/Bioinformatics, Computer Appl. in Life Sciences, Microarrays}
}

@article{Zhang2017-rna,
    title = {{Sequence-specific Bias Correction for RNA-seq Data using Recurrent Neural Networks}},
    year = {2017},
    journal = {BMC Genomics},
    author = {Zhang, Yao-zhong and Yamaguchi, Rui and Imoto, Seiya and Miyano, Satoru},
    url = {http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3262-5},
    doi = {10.1186/s12864-016-3262-5},
    issn = {14712164},
    keywords = {bias correction, gene, recurrent neural network, rna-seq}
}

@article{10.1148/ryct.2020200033,
    title = {{Severe Acute Respiratory Disease in a Huanan Seafood Market Worker: Images of an Early Casualty}},
    year = {2020},
    journal = {Radiology: Cardiothoracic Imaging},
    author = {Qian, Lijuan and Yu, Jie and Shi, Heshui},
    number = {1},
    month = {2},
    pages = {e200033},
    volume = {2},
    publisher = {Radiological Society of North America (RSNA)},
    url = {http://pubs.rsna.org/doi/10.1148/ryct.2020200033},
    doi = {10.1148/ryct.2020200033},
    issn = {2638-6135}
}

@article{10.1148/radiol.2282030593,
    title = {{Severe acute respiratory syndrome: Radiographic appearances and pattern of progression in 138 patients}},
    year = {2003},
    journal = {Radiology},
    author = {Wong, K. T. and Antonio, Gregory E. and Hui, David S.C. and Lee, Nelson and Yuen, Edmund H.Y. and Wu, Alan and Leung, C. B. and Rainer, T. H. and Cameron, Peter and Chung, Sydney S.C. and Sung, Joseph J.Y. and Ahuja, Anil T.},
    number = {2},
    month = {8},
    pages = {401--406},
    volume = {228},
    publisher = {Radiological Society of North America},
    doi = {10.1148/radiol.2282030593},
    issn = {00338419},
    keywords = {Acute interstitial, Lung, Pneumonia, Radiography, Severe acute respiratory syndrome}
}

@article{Warren2018RALE,
    title = {{Severity scoring of lung oedema on the chest radiograph is associated with clinical outcomes in ARDS}},
    year = {2018},
    journal = {Thorax},
    author = {Warren, Melissa A. and Zhao, Zhiguou and Koyama, Tatsuki and Bastarache, Julie A. and Shaver, Ciara M. and Semler, Matthew W. and Rice, Todd W. and Matthay, Michael A. and Calfee, Carolyn S. and Ware, Lorraine B.},
    number = {9},
    month = {9},
    pages = {840--846},
    volume = {73},
    publisher = {BMJ Publishing Group},
    url = {/pmc/articles/PMC6410734/?report=abstract https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6410734/},
    doi = {10.1136/thoraxjnl-2017-211280},
    issn = {14683296},
    pmid = {29903755},
    keywords = {ARDS, imaging/CT MRI etc, pulmonary oedema}
}

@article{Butler2013a,
    title = {{Sham journals scam authors}},
    year = {2013},
    journal = {Nature},
    author = {Butler, Declan},
    number = {7442},
    month = {3},
    pages = {421--422},
    volume = {495},
    url = {http://www.nature.com/doifinder/10.1038/495421a},
    doi = {10.1038/495421a},
    issn = {0028-0836, 1476-4687}
}

@article{Berg2005,
    title = {{Shape matching and object recognition using low distortion correspondences}},
    year = {2005},
    author = {Berg, A.C. and Berg, T.L. and Malik, J.},
    url = {http://www.computer.org/portal/web/csdl/doi/10.1109/CVPR.2005.320}
}

@article{Yi2017,
    title = {{Sharpness-aware Low dose CT denoising using conditional generative adversarial network}},
    year = {2017},
    author = {Yi, Xin and Babyn, Paul},
    month = {8},
    url = {http://arxiv.org/abs/1708.06453},
    arxivId = {1708.06453}
}

@article{Li2020SiameseFundusKnee,
    title = {{Siamese neural networks for continuous disease severity evaluation and change detection in medical imaging}},
    year = {2020},
    journal = {Digital Medicine},
    author = {Li, Matthew D. and Chang, Ken and Bearce, Ben and Chang, Connie Y. and Huang, Ambrose J. and Campbell, J. Peter and Brown, James M. and Singh, Praveer and Hoebel, Katharina V. and Erdo{\u{g}}mu{\c{s}}, Deniz and Ioannidis, Stratis and Palmer, William E. and Chiang, Michael F. and Kalpathy-Cramer, Jayashree},
    number = {1},
    month = {12},
    pages = {1--9},
    volume = {3},
    publisher = {Nature Research},
    url = {https://doi.org/10.1038/s41746-020-0255-1},
    doi = {10.1038/s41746-020-0255-1},
    issn = {23986352},
    keywords = {Diagnosis, Machine learning, Medical imaging, Medical research}
}

@article{Wu2019,
    title = {{Simplifying Graph Convolutional Networks}},
    year = {2019},
    journal = {36th International Conference on Machine Learning, ICML 2019},
    author = {Wu, Felix and Zhang, Tianyi and Souza, Amauri Holanda de and Fifty, Christopher and Yu, Tao and Weinberger, Kilian Q.},
    month = {2},
    pages = {11884--11894},
    volume = {2019-June},
    publisher = {International Machine Learning Society (IMLS)},
    url = {http://arxiv.org/abs/1902.07153},
    arxivId = {1902.07153}
}

@article{Tsaftaris2017,
    title = {{Simulation and synthesis in medical imaging: Second international workshop, SASHIMI 2017 held in conjunction with MICCAI 2017 Qu{\'{e}}bec city, QC, Canada, September 10, 2017 proceedings}},
    year = {2017},
    journal = {Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)},
    author = {Tsaftaris, Sotirios A. and Gooya, Ali and Frangi, Alejandro F. and Prince, Jerry L.},
    pages = {3--13},
    volume = {10557 LNCS},
    isbn = {9783319681269},
    doi = {10.1007/978-3-319-68127-6},
    issn = {16113349},
    pmid = {21500255},
    arxivId = {1703.00035},
    keywords = {cardiac, ct, deep learning, gan, mr, synthesis}
}

@article{Prastawa2009,
    title = {{Simulation of brain tumors in MR images for evaluation of segmentation efficacy.}},
    year = {2009},
    journal = {Medical image analysis},
    author = {Prastawa, Marcel and Bullitt, Elizabeth and Gerig, Guido},
    number = {2},
    month = {4},
    pages = {297--311},
    volume = {13},
    publisher = {NIH Public Access},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/19119055 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC2660387},
    doi = {10.1016/j.media.2008.11.002},
    issn = {1361-8423},
    pmid = {19119055}
}

@inproceedings{Zhu2006a,
    title = {{Simultaneous record detection and attribute labeling in web data extraction}},
    year = {2006},
    author = {Zhu, J. and Nie, Z. and Wen, J. R and Zhang, B. and Ma, W. Y},
    pages = {494–503}
}

@inproceedings{zhu_simultaneous_2006,
    title = {{Simultaneous record detection and attribute labeling in web data extraction}},
    year = {2006},
    booktitle = {Cnternational conference on Knowledge Ciscovery and Data Mining},
    author = {Zhu, J and Nie, Z and Wen, J R and Zhang, B and Ma, W Y}
}

@article{Bendall2014,
    title = {{Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development.}},
    year = {2014},
    journal = {Cell},
    author = {Bendall, Sean C and Davis, Kara L and Amir, El-Ad David and Tadmor, Michelle D and Simonds, Erin F and Chen, Tiffany J and Shenfeld, Daniel K and Nolan, Garry P and Pe'er, Dana},
    month = {4},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/24766814 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4045247},
    doi = {10.1016/j.cell.2014.04.005},
    issn = {1097-4172},
    pmid = {24766814}
}

@article{Joost2016,
    title = {{Single-Cell Transcriptomics Reveals that Differentiation and Spatial Signatures Shape Epidermal and Hair Follicle Heterogeneity}},
    year = {2016},
    journal = {Cell Systems},
    author = {Joost, Simon and Zeisel, Amit and Jacob, Tina and Sun, Xiaoyan and La Manno, Gioele and L{\"{o}}nnerberg, Peter and Linnarsson, Sten and Kasper, Maria},
    month = {9},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/27641957},
    doi = {10.1016/j.cels.2016.08.010},
    issn = {24054712},
    pmid = {27641957}
}

@inproceedings{Ma2015,
    title = {{Small instance detection by integer programming on object density maps}},
    year = {2015},
    booktitle = {Computer Vision and Pattern Recognition},
    author = {Ma, Zheng and Yu, Lei and Chan, Antoni B},
    volume = {07-12-June},
    url = {http://visal.cs.cityu.edu.hk/static/pubs/conf/cvpr15-densdet.pdf},
    isbn = {9781467369640},
    doi = {10.1109/CVPR.2015.7298992},
    issn = {10636919}
}

@article{Eggert2006,
    title = {{Small molecule screening by imaging.}},
    year = {2006},
    journal = {Curr Opin Chem Biol},
    author = {Eggert, U S and Mitchison, T J},
    volume = {10},
    url = {http://dx.doi.org/10.1016/j.cbpa.2006.04.010},
    doi = {10.1016/j.cbpa.2006.04.010}
}

@article{Mitchison2005,
    title = {{Small-molecule screening and profiling by using automated microscopy.}},
    year = {2005},
    journal = {Chembiochem},
    author = {Mitchison, T J},
    volume = {6},
    url = {http://dx.doi.org/10.1002/cbic.200400272},
    doi = {10.1002/cbic.200400272}
}

@article{lopez_solving_2006,
    title = {{Solving feature subset selection problem by a parallel scatter search}},
    year = {2006},
    journal = {European Journal of Operational Research},
    author = {L{\'{o}}pez, Félix Garcıa and Torres, Miguel Garcıa and Batista, Belén Melián and P{\'{e}}rez, José A. Moreno and Moreno-Vega, J. Marcos},
    number = {2},
    pages = {477--489},
    volume = {169},
    url = {http://www.sciencedirect.com/science/article/pii/S0377221704005491 http://jamoreno.webs.ull.es/www/papers/GGMMM06EJOR.pdf}
}

@article{Morrison1961,
    title = {{Some Applications of Statistics to Medical Research}},
    year = {1961},
    author = {Morrison, Robert T.},
    url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1939269/pdf/canmedaj00880-0030.pdf}
}

@article{Schneider2001,
    title = {{Sound, Pitch, and Scale: From "Tone Measurements" to Sonological Analysis in Ethnomusicology}},
    shorttitle = {Sound, Pitch, and Scale},
    year = {2001},
    journal = {Ethnomusicology},
    author = {Schneider, Albrecht},
    number = {3},
    month = {10},
    pages = {489--519},
    volume = {45},
    url = {http://www.jstor.org/stable/852868 http://www.jstor.org/stable/pdfplus/852868.pdf?acceptTC=true},
    doi = {10.2307/852868},
    issn = {00141836}
}

@article{Kauchak2004,
    title = {{Sources of success for boosted wrapper induction}},
    year = {2004},
    journal = {The Journal of Machine Learning Research},
    author = {Kauchak, D. and Smarr, J. and Elkan, C.},
    pages = {499–527},
    volume = {5},
    url = {http://dl.acm.org/citation.cfm?id=1005350}
}

@article{kauchak_sources_2004,
    title = {{Sources of success for boosted wrapper induction}},
    year = {2004},
    journal = {The Journal of Machine Learning Research},
    author = {Kauchak, D and Smarr, J and Elkan, C},
    volume = {5}
}

@article{Gilbert2010a,
    title = {{Sparse recovery using sparse matrices}},
    year = {2010},
    journal = {Proceedings of the IEEE},
    author = {Gilbert, Anna and Indyk, Piotr},
    url = {https://people.csail.mit.edu/indyk/survey-10.pdf},
    isbn = {0018-9219},
    doi = {10.1109/JPROC.2010.2045092},
    issn = {00189219},
    keywords = {Compressive sensing, Expanders, Sparse matrices, Sparse recovery, Streaming algorithms}
}

@article{Wright2010,
    title = {{Sparse representation for computer vision and pattern recognition}},
    year = {2010},
    journal = {Proceedings of the IEEE},
    author = {Wright, John and Ma, Yi and Mairal, Julien and Sapiro, Guillermo and Huang, Thomas S. and Yan, Shuicheng},
    number = {6},
    pages = {1031–1044},
    volume = {98},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5456194 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5456194&tag=1 http://www.dtic.mil/dtic/tr/fulltext/u2/a513248.pdf}
}

@article{Shekhar2002,
    title = {{Spatial contextual classification and prediction models for mining geospatial data}},
    year = {2002},
    journal = {Multimedia, IEEE Transactions on},
    author = {Shekhar, Shashi and Schrater, Paul R. and Vatsavai, Ranga Raju and Wu, Weili and Chawla, Sanjay},
    number = {2},
    pages = {174–188},
    volume = {4},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1017732}
}

@inproceedings{Jaderberg2015a,
    title = {{Spatial transformer networks}},
    year = {2015},
    booktitle = {Advances in Neural Information Processing Systems},
    author = {Jaderberg, Max and Simonyan, Karen and Zisserman, Andrew and {others} and Kavukcuoglu, Koray},
    url = {https://arxiv.org/abs/1506.02025},
    isbn = {9781627480031},
    doi = {10.1038/nbt.3343},
    issn = {1087-0156},
    pmid = {26571099},
    arxivId = {arXiv:1506.02025v1}
}

@article{Murphy2005,
    title = {{Special issue on molecular and cellular bioimaging.}},
    year = {2005},
    journal = {Ieee T Image Process},
    author = {Murphy, R F and Meijering, E and Danuser, G},
    volume = {14},
    url = {http://dx.doi.org/10.1109/TIP.2005.855701},
    doi = {10.1109/TIP.2005.855701}
}

@inproceedings{Bruna2013,
    title = {{Spectral Networks and Locally Connected Networks on Graphs}},
    year = {2014},
    booktitle = {International Conference on Learning Representations},
    author = {Bruna, Joan and Zaremba, Wojciech and Szlam, Arthur and LeCun, Yann},
    url = {http://arxiv.org/abs/1312.6203},
    arxivId = {1312.6203}
}

@article{Li2006,
    title = {{Spirit rover localization and topographic mapping at the landing site of Gusev crater, Mars}},
    year = {2006},
    journal = {Journal of Geophysical Research: Planets (1991–2012)},
    author = {Li, Rongxing and Archinal, Brent A. and Arvidson, Raymond E. and Bell, Jim and Christensen, Philip and Crumpler, Larry and Des Marais, David J. and Di, Kaichang and Duxbury, Tom and Golombek, Matt},
    number = {E2},
    volume = {111},
    url = {http://onlinelibrary.wiley.com/doi/10.1029/2005JE002483/full http://shoreline.eng.ohio-state.edu/dkc/JGR_Spirit.pdf}
}

@article{Shape,
    title = {{SPORE SHAPE AN D STRUCTU RE A . Symmetry}},
    journal = {Microscope},
    author = {Shape, Spore and Structu, A N D}
}

@book{Walls2005,
    title = {{Spring in action}},
    year = {2005},
    author = {Walls, C. and Breidenbach, R. and Online, Safari Tech Books},
    publisher = {Manning},
    url = {http://dl.acm.org/citation.cfm?id=1408148}
}

@article{hou2016squared,
    title = {{Squared Earth Mover's Distance-based Loss for Training Deep Neural Networks}},
    year = {2016},
    journal = {arXiv:1611.05916},
    author = {Hou, Le and Yu, Chen-Ping and Samaras, Dimitris}
}

@inproceedings{wu2017squeezedet,
    title = {{SqueezeDet: Unified, Small, Low Power Fully Convolutional Neural Networks for Real-Time Object Detection for Autonomous Driving.}},
    year = {2017},
    booktitle = {CVPR Workshops},
    author = {Wu, Bichen and Iandola, Forrest N and Jin, Peter H and Keutzer, Kurt},
    pages = {446--454}
}

@article{iandola2016squeezenet,
    title = {{Squeezenet: Alexnet-level accuracy with 50x fewer parameters and< 0.5 mb model size}},
    year = {2016},
    journal = {arXiv preprint arXiv:1602.07360},
    author = {Iandola, Forrest N and Han, Song and Moskewicz, Matthew W and Ashraf, Khalid and Dally, William J and Keutzer, Kurt}
}

@inproceedings{liu2016ssd,
    title = {{Ssd: Single shot multibox detector}},
    year = {2016},
    booktitle = {European conference on computer vision},
    author = {Liu, Wei and Anguelov, Dragomir and Erhan, Dumitru and Szegedy, Christian and Reed, Scott and Fu, Cheng-Yang and Berg, Alexander C},
    pages = {21--37},
    organization = {Springer}
}

@article{Roth2017,
    title = {{Stabilizing Training of Generative Adversarial Networks through Regularization}},
    year = {2017},
    author = {Roth, Kevin and Lucchi, Aurelien and Nowozin, Sebastian and Hofmann, Thomas},
    month = {5},
    url = {http://arxiv.org/abs/1705.09367},
    arxivId = {1705.09367}
}

@article{Roth2017b,
    title = {{Stabilizing Training of Generative Adversarial Networks through Regularization}},
    year = {2017},
    author = {Roth, Kevin and Lucchi, Aurelien and Nowozin, Sebastian and Hofmann, Thomas},
    month = {5},
    url = {http://arxiv.org/abs/1705.09367},
    arxivId = {1705.09367}
}

@article{Newell,
    title = {{Stacked Hourglass Networks for Human Pose Estimation}},
    author = {Newell, Alejandro and Yang, Kaiyu and Deng, Jia},
    url = {https://arxiv.org/pdf/1603.06937.pdf},
    keywords = {top-down inference}
}

@inproceedings{Muslea1998,
    title = {{Stalker: Learning extraction rules for semistructured, web-based information sources}},
    shorttitle = {Stalker},
    year = {1998},
    author = {Muslea, I. and Minton, S. and Knoblock, C.},
    pages = {74–81},
    url = {https://www.aaai.org/Papers/Workshops/1998/WS-98-14/WS98-14-011.pdf}
}

@inproceedings{muslea_stalker:_1998,
    title = {{Stalker: Learning extraction rules for semistructured, web-based information sources}},
    shorttitle = {Stalker},
    year = {1998},
    booktitle = {Proceedings of {\{}AAAI{\}}-98 Workshop on {\{}AI{\}} and Information Integration},
    author = {Muslea, I and Minton, S and Knoblock, C}
}

@article{Chica2015,
    title = {{Standard methods for inexpensive pollen loads authentication by means of computer vision and machine learning}},
    year = {2015},
    journal = {arXiv preprint arXiv:1511.04320},
    author = {Chica, Manuel and Campoy, Pascual},
    month = {11},
    url = {http://arxiv.org/abs/1511.04320},
    arxivId = {1511.04320}
}

@misc{MobiSocial2012,
    title = {{Stanford MobiSocial Computing Laboratory}},
    year = {2012},
    author = {{MobiSocial}},
    url = {http://mobisocial.stanford.edu/}
}

@article{Mena2003,
    title = {{State of the art on automatic road extraction for GIS update: A novel classification}},
    shorttitle = {State of the art on automatic road extraction for},
    year = {2003},
    journal = {Pattern Recognition Letters},
    author = {Mena, Juan B.},
    url = {http://www.sciencedirect.com/science/article/pii/S0167865503001648 http://www2.uah.es/juan_mena/Publicaciones/State_of_the_art_PATREC.pdf},
    isbn = {0167-8655},
    doi = {10.1016/S0167-8655(03)00164-8},
    issn = {01678655},
    pmid = {18578521},
    keywords = {Automatic road extraction, GIS update}
}

@misc{Beth2008,
    title = {{Static Analysis in PTP with CDT}},
    year = {2008},
    author = {Beth, Tibbitts},
    month = {3},
    url = {http://www.eclipsecon.org/2008/sub/attachments/Static_Analysis_in_PTP_with_CDT.pdf},
    address = {Santa Carla, CA}
}

@article{Tribus,
    title = {{Static Code Features for a Machine Learning based Inspection}},
    author = {Tribus, H.},
    url = {http://sea-mist.se/fou/cuppsats.nsf/all/f8c05b338ad118edc12577a6004b634b/$file/BTH-hatr-thesis.pdf}
}

@inproceedings{Xie2006,
    title = {{Static detection of security vulnerabilities in scripting languages}},
    year = {2006},
    author = {Xie, Y. and Aiken, A.},
    pages = {13–13},
    url = {http://www.usenix.org/events/sec06/tech/full_papers/xie/xie_html/}
}

@article{Papadakis2005,
    title = {{Stavies: A system for information extraction from unknown web data sources through automatic web wrapper generation using clustering techniques}},
    year = {2005},
    journal = {IEEE Transactions on Knowledge and Data Engineering},
    author = {Papadakis, N. K and Skoutas, D. and Raftopoulos, K. and Varvarigou, T. A},
    pages = {1638–1652}
}

@article{papadakis_stavies:_2005,
    title = {{Stavies: A system for information extraction from unknown web data sources through automatic web wrapper generation using clustering techniques}},
    year = {2005},
    journal = {IEEE Transactions on Knowledge and Data Engineering},
    author = {Papadakis, N K and Skoutas, D and Raftopoulos, K and Varvarigou, T A}
}

@article{Fang2017,
    title = {{STEM: a suffix tree-based method for web data records extraction}},
    year = {2017},
    journal = {Knowledge and Information Systems},
    author = {Fang, Yixiang and Xie, Xiaoqin and Zhang, Xiaofeng and Cheng, Reynold and Zhang, Zhiqiang},
    publisher = {Springer London},
    doi = {10.1007/s10115-017-1062-0},
    issn = {02193116},
    keywords = {Data Record pattern, HTML tag path, Suffix tree, Web data extraction}
}

@inproceedings{Kelleher2007,
    title = {{Storytelling alice motivates middle school girls to learn computer programming}},
    year = {2007},
    author = {Kelleher, C. and Pausch, R. and Kiesler, S.},
    pages = {1455–1464},
    url = {http://dl.acm.org/citation.cfm?id=1240624.1240844 http://www.cse.wustl.edu/~ckelleher/StorytellingCHI.pdf}
}

@article{Szklarczyk2019,
    title = {{STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets}},
    year = {2019},
    journal = {Nucleic Acids Research},
    author = {Szklarczyk, Damian and Gable, Annika L and Lyon, David and Junge, Alexander and Wyder, Stefan and Huerta-Cepas, Jaime and Simonovic, Milan and Doncheva, Nadezhda T and Morris, John H and Bork, Peer and Jensen, Lars J and Mering, Christian von},
    number = {D1},
    month = {1},
    pages = {D607-D613},
    volume = {47},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/30476243 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC6323986 https://academic.oup.com/nar/article/47/D1/D607/5198476},
    doi = {10.1093/nar/gky1131},
    issn = {0305-1048},
    pmid = {30476243}
}

@article{Snel2000,
    title = {{STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene.}},
    year = {2000},
    journal = {Nucleic acids research},
    author = {Snel, B and Lehmann, G and Bork, P and Huynen, M A},
    number = {18},
    month = {9},
    pages = {3442--4},
    volume = {28},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/10982861 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC110752},
    issn = {1362-4962},
    pmid = {10982861}
}

@inproceedings{Springenberg2014GuidedBackprop,
    title = {{Striving for Simplicity: The All Convolutional Net}},
    year = {2015},
    booktitle = {International Conference on Learning Representations Workshop},
    author = {Springenberg, Jost Tobias and Dosovitskiy, Alexey and Brox, Thomas and Riedmiller, Martin},
    url = {http://arxiv.org/abs/1412.6806},
    arxivId = {1412.6806}
}

@article{Sun2006,
    title = {{Structure Detection System from Web Documents Through Backpropagation Network Learning}},
    year = {2006},
    journal = {AI 2006: Advances in Artificial Intelligence},
    author = {Sun, B. and Ryu, J. and Han, K.}
}

@article{Ding2010c,
    title = {{Sub-kilometer crater discovery with boosting and transfer learning}},
    year = {2010},
    journal = {ACM Transactions on Computational Logic},
    author = {Ding, W. and Stepinski, T. F and Mu, Y. and Bandeira, L. and Ricardo, R. and Wu, Y. and Lu, Z. and Cao, T. and Wu, X.},
    number = {4},
    month = {7},
    volume = {2}
}

@article{mclaughlin2014subcutaneous,
    title = {{Subcutaneous adipose cell size and distribution: relationship to insulin resistance and body fat}},
    year = {2014},
    journal = {Obesity},
    author = {McLaughlin, T and Lamendola, C and Coghlan, N and Liu, T C and Lerner, K and Sherman, A and Cushman, S W},
    number = {3},
    pages = {673--680},
    volume = {22},
    publisher = {Wiley Online Library}
}

@article{Fernando2014,
    title = {{Subspace Alignment For Domain Adaptation}},
    year = {2014},
    author = {Fernando, Basura and Habrard, Amaury and Sebban, Marc and Tuytelaars, Tinne},
    month = {9},
    url = {http://arxiv.org/abs/1409.5241},
    arxivId = {1409.5241}
}

@article{Guillaud2005,
    title = {{Subvisual chromatin changes in cervical epithelium measured by texture image analysis and correlated with HPV.}},
    year = {2005},
    journal = {Gynecol Oncol},
    author = {Guillaud, M and Adler-Storthz, K and Malpica, A and Staerkel, G and Matisic, J and Van Niekirk, D and Cox, D and Poulin, N and Follen, M and Macaulay, C},
    volume = {99},
    url = {http://dx.doi.org/10.1016/j.ygyno.2005.07.037},
    doi = {10.1016/j.ygyno.2005.07.037}
}

@article{PMID22323520,
    title = {{Summarizing and correcting the GC content bias in high-throughput sequencing.}},
    year = {2012},
    journal = {Nucleic acids research},
    author = {Benjamini, Yuval and Speed, Terence P},
    number = {10},
    month = {5},
    pages = {e72},
    volume = {40},
    publisher = {Oxford University Press},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/22323520 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3378858},
    doi = {10.1093/nar/gks001},
    issn = {1362-4962},
    pmid = {22323520}
}

@inproceedings{Dollar2006,
    title = {{Supervised learning of edges and object boundaries}},
    year = {2006},
    author = {Dollar, Piotr and Tu, Zhuowen and Belongie, Serge},
    pages = {1964–1971},
    volume = {2},
    publisher = {IEEE},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1640993 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=1640993&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D1640993 http://www.csd.uwo.ca/~olga/Courses/Fall2013/CS9840/P}
}

@article{Liu2015,
    title = {{Supply chain coordination in quality improvement with synergy effect}},
    year = {2015},
    journal = {International Journal of Data Analysis Techniques and Strategies},
    author = {Liu, Z. and He, Y.},
    number = {4},
    pages = {29--37},
    volume = {7},
    url = {http://proceedings.mlr.press/v15/larochelle11a/larochelle11a.pdf},
    doi = {10.1504/IJDATS.2015.073866},
    issn = {15324435},
    keywords = {Subsidy rate, Synergy effect, coordination; quality}
}

@article{Mountrakis2011,
    title = {{Support vector machines in remote sensing: A review}},
    shorttitle = {Support vector machines in remote sensing},
    year = {2011},
    journal = {ISPRS Journal of Photogrammetry and Remote Sensing},
    author = {Mountrakis, Giorgos and Im, Jungho and Ogole, Caesar},
    url = {http://www.sciencedirect.com/science/article/pii/S0924271610001140 http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.187.2781&rep=rep1&type=pdf}
}

@article{Cortes1995,
    title = {{Support Vector Networks}},
    year = {1995},
    journal = {Machine Learning},
    author = {{C.{\~{}}Cortes} and {C.{\~{}}Cortes} and {V.{\~{}}Vapnik} and {V.{\~{}}Vapnik}},
    number = {3},
    month = {9},
    pages = {273{\~{}}-{\~{}}297},
    volume = {20},
    url = {http://link.springer.com/article/10.1007/BF00994018 http://link.springer.com/article/10.1007/bf00994018 http://link.springer.com/content/pdf/10.1007%2FBF00994018.pdf},
    isbn = {0885-6125},
    doi = {10.1007/BF00994018},
    issn = {08856125},
    pmid = {19549084},
    language = {en}
}

@incollection{Bay2006,
    title = {{Surf: Speeded up robust features}},
    shorttitle = {Surf},
    year = {2006},
    author = {Bay, Herbert and Tuytelaars, Tinne and Van Gool, Luc},
    pages = {404–417},
    publisher = {Springer},
    url = {http://link.springer.com/chapter/10.1007/11744023_32 https://lirias.kuleuven.be/bitstream/123456789/71383/1/Bay_Tuytelaars_VanGool-surf-eccv06.pdf}
}

@article{Aimanianda2009,
    title = {{Surface hydrophobin prevents immune recognition of airborne fungal spores.}},
    year = {2009},
    journal = {Nature},
    author = {Aimanianda, Vishukumar and Bayry, Jagadeesh and Bozza, Silvia and Kniemeyer, Olaf and Perruccio, Katia and Elluru, Sri Ramulu and Clavaud, Cécile and Paris, Sophie and Brakhage, Axel A and Kaveri, Srini V and Romani, Luigina and Latg{\'{e}}, Jean-Paul},
    number = {7259},
    pages = {1117--21},
    volume = {460},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/19713928},
    isbn = {1476-4687 (Electronic) 0028-0836 (Linking)},
    doi = {10.1038/nature08264},
    issn = {1476-4687},
    pmid = {19713928},
    keywords = {Adoptive Transfer, Air Microbiology, Allergens, Alveolar, Alveolar: immunology, Animals, Antigens, Aspergillus fumigatus, Aspergillus fumigatus: chemistry, Aspergillus fumigatus: immunology, Aspergillus fumigatus: physiology, CD4-Positive T-Lymphocytes, CD4-Positive T-Lymphocytes: immunology, Cathepsins, Cells, Cultured, Dendritic Cells, Dendritic Cells: cytology, Dendritic Cells: immunology, Dendritic Cells: transplantation, Fungal, Fungal Proteins, Fungal: chemistry, Fungal: genetics, Fungal: immunology, Humans, Hydrofluoric Acid, Hydrofluoric Acid: chemistry, Immune System, Immune System: immunology, Inbred C57BL, Lymphocyte Activation, Macrophages, Mice, Plant, Spores}
}

@article{Maciel2011,
    title = {{Surgical model-view-controller simulation software framework for local and collaborative applications}},
    year = {2011},
    journal = {Int J CARS},
    author = {Maciel, A. and Sankaranarayanan, G. and Halic, T. and Arikatla, V. S and Lu, Z. and De, S.},
    pages = {457–471},
    volume = {6},
    url = {http://www.springerlink.com/content/xn65hk45p6017007/}
}

@article{Sankur2004,
    title = {{Survey over image thresholding techniques and quantitative performance evaluation}},
    year = {2004},
    journal = {Journal of Electronic Imaging},
    author = {Sezgin, Mehmet and Sankur, Bulent},
    publisher = {International Society for Optics and Photonics},
    url = {http://electronicimaging.spiedigitallibrary.org/article.aspx?doi=10.1117/1.1631315},
    doi = {10.1117/1.1631315},
    issn = {1017-9909},
    keywords = {Algorithms}
}

@article{Omari2017,
    title = {{Synthesis of Forgiving Data Extractors}},
    year = {2017},
    journal = {International Conference on Web Search and Data Mining},
    author = {Omari, Adi and Shoham, Sharon and Yahav, Eran},
    isbn = {9781450346757},
    doi = {10.1145/3018661.3018740}
}

@article{Leipold1995,
    title = {{Synthesis of Nontranslating or Translating Specialized Ribosomes Causes Feedback Regulation of Ribosomal RNA Synthesis in Escherichia coli}},
    year = {1995},
    journal = {Biochemical and biophysical research communications},
    author = {Leipold, R. J and Morgan, R. W and Dhurjati, P.},
    number = {1},
    pages = {393–400},
    volume = {206},
    url = {http://www.sciencedirect.com/science/article/pii/S0006291X85710546}
}

@inproceedings{Bi2017,
    title = {{Synthesis of Positron Emission Tomography (PET) Images via Multi-channel Generative Adversarial Networks (GANs)}},
    year = {2017},
    booktitle = {Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment},
    author = {Bi, Lei and Kim, Jinman and Kumar, Ashnil and Feng, Dagan and Fulham, Michael},
    month = {7},
    url = {http://arxiv.org/abs/1707.09747},
    arxivId = {1707.09747}
}

@article{Zhao2017,
    title = {{Synthesizing Filamentary Structured Images with GANs}},
    year = {2017},
    author = {Zhao, He and Li, Huiqi and Cheng, Li},
    pages = {1--10},
    url = {http://arxiv.org/abs/1706.02185},
    arxivId = {1706.02185}
}

@inproceedings{Frid-Adar2018,
    title = {{Synthetic Data Augmentation using GAN for Improved Liver Lesion Classification}},
    year = {2018},
    booktitle = {International Symposium on Biomedical Imaging (ISBI)},
    author = {Frid-Adar, Maayan and Klang, Eyal and Amitai, Michal and Goldberger, Jacob and Greenspan, Hayit},
    month = {1},
    url = {http://arxiv.org/abs/1801.02385},
    arxivId = {1801.02385}
}

@article{Schi,
    title = {{Synthetic Fundus Fluorescein Angiography using Deep Neural Networks}},
    author = {Schi, Florian and Yu, Zekuan and Arguin, Steve and Maier, Andreas and Ren, Qiushi},
    pages = {234--238}
}

@article{Guibas,
    title = {{Synthetic Medical Images from Dual Generative Adversarial Networks}},
    author = {Guibas, John T and Henry Gunn, Student M and Virdi, Tejpal S and Li Student Henry M Gunn, Peter S},
    url = {https://arxiv.org/pdf/1709.01872.pdf}
}

@article{Carpenter2004,
    title = {{Systematic genome-wide screens of gene function.}},
    year = {2004},
    journal = {Nat Rev Genet},
    author = {Carpenter, A E and Sabatini, D M},
    volume = {5},
    url = {http://dx.doi.org/10.1038/nrg1248},
    doi = {10.1038/nrg1248}
}

@inproceedings{Oreshkin2018,
    title = {{Tadam: Task dependent adaptive metric for improved few-shot learning}},
    year = {2018},
    booktitle = {Neural Information Processing Systems},
    author = {Oreshkin, Boris N. and Rodriguez, Pau and Lacoste, Alexandre},
    month = {5},
    volume = {2018-Decem},
    url = {http://arxiv.org/abs/1805.10123},
    issn = {10495258},
    arxivId = {1805.10123}
}

@article{Audemard2018,
    title = {{Target variant detection in leukemia using unaligned RNA-Seq reads}},
    year = {2018},
    journal = {bioRxiv},
    author = {Audemard, Éric and Gendron, Patrick and Lavall{\'{e}}e, Vincent-Philippe and H{\'{e}}bert, Josée and Sauvageau, Guy and Lemieux, Sebastien},
    publisher = {Cold Spring Harbor Laboratory},
    url = {https://www.biorxiv.org/content/early/2018/04/17/295808},
    doi = {10.1101/295808}
}

@article{Overmars2004,
    title = {{Teaching computer science through game design}},
    year = {2004},
    journal = {Computer},
    author = {Overmars, M.},
    number = {4},
    pages = {81--83},
    volume = {37},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1297314&abstractAccess=no&userType=inst},
    doi = {10.1109/MC.2004.1297314},
    issn = {0018-9162}
}

@article{Carlson2004,
    title = {{Teaching computer security}},
    year = {2004},
    journal = {ACM SIGCSE Bulletin},
    author = {Carlson, David},
    month = {6},
    pages = {64–67},
    volume = {36},
    url = {http://delivery.acm.org/10.1145/1030000/1024374/p64-carlson.pdf?key1=1024374&key2=2840824031&coll=DL&dl=ACM&ip=158.121.104.17&CFID=18773404&CFTOKEN=76639461 http://portal.acm.org/citation.cfm?id=1024374 http://portal.acm.org/ft_gateway.cfm?id=1024374&type},
    doi = {10.1145/1024338.1024374},
    issn = {0097-8418}
}

@inproceedings{Bishop,
    title = {{Teaching computer security}},
    author = {Bishop, M.}
}

@book{Parker2010,
    title = {{Teaching tech-savvy kids: Bringing digital media into the classroom, grades 5-12}},
    shorttitle = {Teaching tech-savvy kids},
    year = {2010},
    author = {Parker, Jessica K.},
    publisher = {SAGE Publications}
}

@book{AmericanAssociationofUniversityWomen2000,
    title = {{Tech-savvy: educating girls in the new computer age}},
    shorttitle = {Tech-savvy},
    year = {2000},
    author = {{American Association of University Women} and {Educational Foundation} and Commission on Technology, Gender and Teacher Education},
    publisher = {American Association of University Women Educational Foundation},
    url = {http://www.aauw.org/resource/tech-savvy-educating-girls-in-the-new-computer-age/ http://www.aauw.org/files/2013/02/tech-savvy-educating-girls-in-the-new-computer-age.pdf},
    address = {Washington, DC},
    isbn = {1879922231 9781879922235},
    language = {English}
}

@article{Jensen2014,
    title = {{Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients}},
    year = {2014},
    journal = {Nature Communications},
    author = {Jensen, Anders Boeck and Moseley, Pope L. and Oprea, Tudor I. and Elles{\o}e, Sabrina Gade and Eriksson, Robert and Schmock, Henriette and Jensen, Peter Bjødstrup and Jensen, Lars Juhl and Brunak, Søren},
    number = {1},
    month = {9},
    pages = {4022},
    volume = {5},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/articles/ncomms5022},
    doi = {10.1038/ncomms5022},
    issn = {2041-1723},
    keywords = {Health care, Medical research}
}

@misc{tensorflow2015,
    title = {{TensorFlow: Large-Scale Machine Learning on Heterogeneous Systems}},
    year = {2015},
    author = {Abadi, Martín and Barham, Paul and Chen, Jianmin and Chen, Zhifeng and Davis, Andy and Dean, Jeffrey and Devin, Matthieu and Ghemawat, Sanjay and Irving, Geoffrey and Isard, Michael and Kudlur, Manjunath and Levenberg, Josh and Monga, Rajat and Moore, Sherry and Murray, Derek G and Steiner, Benoit and Tucker, Paul and Vasudevan, Vijay and Warden, Pete and Wicke, Martin and Yu, Yuan and Zheng, Xiaoqiang and Brain, Google},
    url = {https://www.tensorflow.org/}
}

@article{Ghani2006,
    title = {{Text mining for product attribute extraction}},
    year = {2006},
    journal = {ACM SIGKDD Explorations Newsletter},
    author = {Ghani, R. and Probst, K. and Liu, Y. and Krema, M. and Fano, A.},
    number = {1},
    pages = {41–48},
    volume = {8}
}

@article{ghani_text_2006,
    title = {{Text mining for product attribute extraction}},
    year = {2006},
    journal = {SIGKDD Explorations Newsletter},
    author = {Ghani, R and Probst, K and Liu, Y and Krema, M and Fano, A}
}

@incollection{Shotton2006,
    title = {{Textonboost: Joint appearance, shape and context modeling for multi-class object recognition and segmentation}},
    shorttitle = {Textonboost},
    year = {2006},
    author = {Shotton, Jamie and Winn, John and Rother, Carsten and Criminisi, Antonio},
    pages = {1–15},
    publisher = {Springer},
    url = {http://link.springer.com/chapter/10.1007/11744023_1 http://www.csd.uwo.ca/~olga/Courses/Fall2013/CS9840/PossibleStudentPapers/eccv06.pdf}
}

@article{Haralick1973,
    title = {{Textural features for image classification.}},
    year = {1973},
    journal = {Ieee T Syst Man Cyb},
    author = {Haralick, R M and Shanmuga, K and Dinstein, I},
    volume = {SMC3},
    url = {http://dx.doi.org/10.1109/TSMC.1973.4309314},
    doi = {10.1109/TSMC.1973.4309314}
}

@article{Turner1986,
    title = {{Texture discrimination by Gabor functions.}},
    year = {1986},
    journal = {Biol Cybern},
    author = {Turner, M R},
    volume = {55}
}

@misc{Stokstad2014,
    title = {{The 1{\%} of scientific publishing}},
    shorttitle = {The 1{\%} of scientific publishing},
    year = {2014},
    author = {Stokstad, Erik},
    month = {7},
    url = {http://news.sciencemag.org/scientific-community/2014/07/1-scientific-publishing}
}

@article{Margolis2000,
    title = {{The anatomy of interest: Women in undergraduate computer science}},
    shorttitle = {The anatomy of interest},
    year = {2000},
    journal = {Women's Studies Quarterly},
    author = {Margolis, Jane and Fisher, Allan and Miller, Faye},
    number = {1/2},
    pages = {104–127},
    volume = {28},
    url = {http://www.jstor.org/stable/10.2307/40004448 http://www.cs.cmu.edu/afs/cs.cmu.edu/project/gendergap/www/papers/anatomyWSQ99.html http://www.jstor.org/stable/pdfplus/40004448.pdf?acceptTC=true}
}

@book{Knuth1973,
    title = {{The art of computer programming}},
    year = {1973},
    author = {Knuth, D. E},
    publisher = {Addison-Wesley, Reading, MA},
    url = {http://www.lavoisier.fr/livre/notice.asp?id=O3OWRSA6XSAOWN}
}

@techreport{Dennie2020-CSTR-CAR-Statement,
    title = {{The Canadian Society of Thoracic Radiology (CSTR) and Canadian Association of Radiologists (CAR) Consensus Statement Regarding Chest Imaging in Suspected and Confirmed COVID-19}},
    year = {2020},
    author = {Dennie, Carole and Hague, Cameron and Lim, Robert S and Manos, Daria and Memauri, Brett F and Nguyen, Elsie T and Taylor, Jana},
    month = {4},
    url = {https://car.ca/covid-19/}
}

@article{CancerGenomeAtlasResearchNetwork2013,
    title = {{The Cancer Genome Atlas Pan-Cancer analysis project.}},
    year = {2013},
    journal = {Nature genetics},
    author = {Weinstein, John N and Collisson, Eric A and Mills, Gordon B and Shaw, Kenna R Mills and Ozenberger, Brad A and Ellrott, Kyle and Shmulevich, Ilya and Sander, Chris and Stuart, Joshua M},
    publisher = {NIH Public Access},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/24071849 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3919969},
    doi = {10.1038/ng.2764},
    issn = {1546-1718},
    pmid = {24071849}
}

@article{Fahlman1989,
    title = {{The cascade-correlation learning architecture}},
    year = {1989},
    author = {Fahlman, Scott E. and Lebiere, Christian},
    url = {http://repository.cmu.edu/compsci/1938/ http://repository.cmu.edu/cgi/viewcontent.cgi?article=2937&context=compsci}
}

@inproceedings{Cook1971,
    title = {{The complexity of theorem-proving procedures}},
    year = {1971},
    author = {Cook, Stephen A.},
    pages = {151--158},
    url = {http://portal.acm.org/citation.cfm?doid=800157.805047},
    address = {Shaker Heights, Ohio, United States},
    doi = {10.1145/800157.805047}
}

@article{Kadurin2016,
    title = {{The cornucopia of meaningful leads: Applying deep adversarial autoencoders for new molecule development in oncology}},
    year = {2016},
    journal = {Oncotarget},
    author = {Kadurin, Artur and Aliper, Alexander and Kazennov, Andrey and Mamoshina, Polina and Vanhaelen, Quentin and Khrabrov, Kuzma and Zhavoronkov, Alex and Kadurin, Artur and Aliper, Alexander and Kazennov, Andrey and Mamoshina, Polina and Vanhaelen, Quentin and Khrabrov, Kuzma and Zhavoronkov, Alex and Kadurin, Artur and Aliper, Alexander and Kazennov, Andrey and Mamoshina, Polina and Vanhaelen, Quentin and Khrabrov, Kuzma and Zhavoronkov, Alex},
    month = {12},
    publisher = {Impact Journals},
    url = {http://www.oncotarget.com/abstract/14073},
    doi = {10.18632/oncotarget.14073},
    issn = {1949-2553},
    pmid = {28029644},
    keywords = {adversarial autoencoder, artificial intelligence, deep learning, drug discovery, generative adversarian networks}
}

@article{Cohen2015,
    title = {{The cost of reading research. A study of Computer Science publication venues}},
    year = {2015},
    journal = {arXiv preprint arXiv:1512.00127},
    author = {Cohen, Joseph Paul and Aravena, Carla and Ding, Wei},
    pages = {1--14},
    volume = {2003},
    url = {http://arxiv.org/abs/1512.00127 http://arxiv.org/pdf/1512.00127},
    arxivId = {1512.00127}
}

@misc{Thille2013Extubate,
    title = {{The decision to extubate in the intensive care unit}},
    year = {2013},
    booktitle = {American Journal of Respiratory and Critical Care Medicine},
    author = {Thille, Arnaud W. and Richard, Jean Christophe M. and Brochard, Laurent},
    month = {6},
    publisher = {American Thoracic Society},
    url = {http://www.atsjournals.org/doi/abs/10.1164/rccm.201208-1523CI},
    doi = {10.1164/rccm.201208-1523CI},
    issn = {1073449X},
    keywords = {Endotracheal tube, Laryngeal injury, Noninvasive ventilation, Organ dysfunction, Weaning}
}

@book{Graham1992,
    title = {{The domain-specific software architecture program}},
    year = {1992},
    author = {Graham, M. H and Mettala, E.},
    publisher = {Citeseer},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.84.2572&rep=rep1&type=pdf}
}

@article{Rubner2000,
    title = {{The earth mover's distance as a metric for image retrieval}},
    year = {2000},
    journal = {International Journal of Computer Vision},
    author = {Rubner, Yossi and Tomasi, Carlo and Guibas, Leonidas J.},
    number = {2},
    pages = {99–121},
    volume = {40},
    url = {http://link.springer.com/article/10.1023/A:1026543900054 http://robotics.stanford.edu/~rubner/papers/rubnerIjcv00.pdf}
}

@inproceedings{levina2001earth,
    title = {{The Earth Mover's distance is the Mallows distance: Some insights from statistics}},
    year = {2001},
    booktitle = {International Conference on Computer Vision},
    author = {Levina, Elizaveta and Bickel, Peter},
    pages = {251--256},
    volume = {2},
    organization = {IEEE},
    isbn = {0769511430},
    doi = {10.1109/ICCV.2001.937632}
}

@article{efron1977efficiency,
    title = {{The Efficiency of Cox's Likelihood for Censored Data Function}},
    year = {1977},
    journal = {Journal of the American Statistical Association},
    author = {Efron, Bradley},
    number = {359},
    pages = {557--565},
    volume = {72},
    publisher = {Taylor {\&} Francis Group},
    keywords = {and let 6r, assuming no ties, be the observed failure, be the risk, censored data, cox likelihood, say for, survival curves, times, tj}
}

@inproceedings{Forrest2008,
    title = {{The evolution of system-call monitoring}},
    year = {2008},
    author = {Forrest, S. and Hofmeyr, S. and Somayaji, A.},
    pages = {418–430},
    url = {http://www.cs.unm.edu/~forrest/publications/acsac08.pdf}
}

@misc{SamuelGershman2014,
    title = {{The Exploitative Economics of Academic Publishing - The Exploitative Economics of Academic Publishing}},
    year = {2014},
    author = {{Samuel Gershman}},
    url = {http://www.betaboston.com/news/2014/05/06/the-exploitative-economics-of-academic-publishing/}
}

@inproceedings{Feiertag1979,
    title = {{The foundations of a provably secure operating system (PSOS)}},
    year = {1979},
    author = {Feiertag, R. J and Neumann, P. G},
    pages = {329–334},
    volume = {48},
    url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.3.9905&rep=rep1&type=pdf}
}

@misc{Waldron2019,
    title = {{The Future of the AI Market: 2019 Study Results}},
    year = {2019},
    author = {Waldron, Tory},
    publisher = {Definitive Healthcare},
    url = {https://blog.definitivehc.com/2019-artificial-intelligence-study}
}

@article{Warde-Farley2010,
    title = {{The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function}},
    year = {2010},
    journal = {Nucleic Acids Research},
    author = {Warde-Farley, David and Donaldson, Sylva L. and Comes, Ovi and Zuberi, Khalid and Badrawi, Rashad and Chao, Pauline and Franz, Max and Grouios, Chris and Kazi, Farzana and Lopes, Christian Tannus and Maitland, Anson and Mostafavi, Sara and Montojo, Jason and Shao, Quentin and Wright, George and Bader, Gary D. and Morris, Quaid},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/20576703 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC2896186 https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkq537},
    doi = {10.1093/nar/gkq537},
    issn = {1362-4962},
    pmid = {20576703}
}

@article{lonsdale2013genotype,
    title = {{The genotype-tissue expression (GTEx) project}},
    year = {2013},
    journal = {Nature genetics},
    author = {Lonsdale, John and Thomas, Jeffrey and Salvatore, Mike and Phillips, Rebecca and Lo, Edmund and Shad, Saboor and Hasz, Richard and Walters, Gary and Garcia, Fernando and Young, Nancy and {others}},
    number = {6},
    pages = {580--585},
    volume = {45},
    publisher = {Nature Research}
}

@article{Bouhaddou2020,
    title = {{The Global Phosphorylation Landscape of SARS-CoV-2 Infection}},
    year = {2020},
    journal = {Cell},
    author = {Bouhaddou, Mehdi and Memon, Danish and Meyer, Bjoern and White, Kris M and Rezelj, Veronica V and Correa Marrero, Miguel and Polacco, Benjamin J and Melnyk, James E and Ulferts, Svenja and Kaake, Robyn M and Batra, Jyoti and Richards, Alicia L and Stevenson, Erica and Gordon, David E and Rojc, Ajda and Obernier, Kirsten and Fabius, Jacqueline M and Soucheray, Margaret and Miorin, Lisa and Moreno, Elena and Koh, Cassandra and Tran, Quang Dinh and Hardy, Alexandra and Robinot, Rémy and Vallet, Thomas and Nilsson-Payant, Benjamin E and Hernandez-Armenta, Claudia and Dunham, Alistair and Weigang, Sebastian and Knerr, Julian and Modak, Maya and Quintero, Diego and Zhou, Yuan and Dugourd, Aurelien and Valdeolivas, Alberto and Patil, Trupti and Li, Qiongyu and H{\"{u}}ttenhain, Ruth and Cakir, Merve and Muralidharan, Monita and Kim, Minkyu and Jang, Gwendolyn and Tutuncuoglu, Beril and Hiatt, Joseph and Guo, Jeffrey Z and Xu, Jiewei and Bouhaddou, Sophia and Mathy, Christopher J P and Gaulton, Anna and Manners, Emma J and F{\'{e}}lix, Eloy and Shi, Ying and Goff, Marisa and Lim, Jean K and McBride, Timothy and O’Neal, Michael C and Cai, Yiming and Chang, Jason C J and Broadhurst, David J and Klippsten, Saker and De wit, Emmie and Leach, Andrew R and Kortemme, Tanja and Shoichet, Brian and Ott, Melanie and Saez-Rodriguez, Julio and tenOever, Benjamin R and Mullins, R Dyche and Fischer, Elizabeth R and Kochs, Georg and Grosse, Robert and Garc{\'{i}}a-Sastre, Adolfo and Vignuzzi, Marco and Johnson, Jeffery R and Shokat, Kevan M and Swaney, Danielle L and Beltrao, Pedro and Krogan, Nevan J},
    month = {6},
    publisher = {Elsevier Inc.},
    url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7321036/},
    doi = {10.1016/j.cell.2020.06.034},
    issn = {0092-8674},
    keywords = {AXL, CDK, MAPK, PIKFYVE, SARS-CoV-2, antiviral, casein kinase II, mass spectrometry, p38, phosphoproteomics},
    language = {eng}
}

@article{Scarselli2009,
    title = {{The graph neural network model}},
    year = {2009},
    journal = {IEEE Transactions on Neural Networks},
    author = {Scarselli, Franco and Gori, Marco and Tsoi, Ah Chung and Hagenbuchner, Markus and Monfardini, Gabriele},
    number = {1},
    pages = {61--80},
    volume = {20},
    isbn = {1045-9227 VO - 20},
    doi = {10.1109/TNN.2008.2005605},
    issn = {10459227},
    pmid = {19068426},
    keywords = {Graph neural networks (GNNs), Graph processing, Graphical domains, Recursive neural networks}
}

@article{Thorsson2018,
    title = {{The Immune Landscape of Cancer}},
    year = {2018},
    journal = {Immunity},
    author = {Thorsson, Vésteinn and Gibbs, David L. and Brown, Scott D. and Wolf, Denise and Bortone, Dante S. and Ou Yang, Tai-Hsien and Porta-Pardo, Eduard and Gao, Galen F. and Plaisier, Christopher L. and Eddy, James A. and Ziv, Elad and Culhane, Aedin C. and Paull, Evan O. and Sivakumar, I.K. Ashok and Gentles, Andrew J. and Malhotra, Raunaq and Farshidfar, Farshad and Colaprico, Antonio and Parker, Joel S. and Mose, Lisle E. and Vo, Nam Sy and Liu, Jianfang and Liu, Yuexin and Rader, Janet and Dhankani, Varsha and Reynolds, Sheila M. and Bowlby, Reanne and Califano, Andrea and Cherniack, Andrew D. and Anastassiou, Dimitris and Bedognetti, Davide and Mokrab, Younes and Newman, Aaron M. and Rao, Arvind and Chen, Ken and Krasnitz, Alexander and Hu, Hai and Malta, Tathiane M. and Noushmehr, Houtan and Pedamallu, Chandra Sekhar and Bullman, Susan and Ojesina, Akinyemi I. and Lamb, Andrew and Zhou, Wanding and Shen, Hui and Choueiri, Toni K. and Weinstein, John N. and Guinney, Justin and Saltz, Joel and Holt, Robert A. and Rabkin, Charles S. and Lazar, Alexander J. and Serody, Jonathan S. and Demicco, Elizabeth G. and Disis, Mary L. and Vincent, Benjamin G. and Shmulevich, Ilya and Caesar-Johnson, Samantha J. and Demchok, John A. and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L. and Hutter, Carolyn M. and Sofia, Heidi J. and Tarnuzzer, Roy and Wang, Zhining and Yang, Liming and Zenklusen, Jean C. and Zhang, Jiashan (Julia) and Chudamani, Sudha and Liu, Jia and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Heiman, David I. and Kim, Jaegil and Lawrence, Michael S. and Lin, Pei and Meier, Sam and Noble, Michael S. and Saksena, Gordon and Voet, Doug and Zhang, Hailei and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Liu, Yuexin and Miller, Michael and Reynolds, Sheila and Shmulevich, Ilya and Thorsson, Vesteinn and Zhang, Wei and Akbani, Rehan and Broom, Bradley M. and Hegde, Apurva M. and Ju, Zhenlin and Kanchi, Rupa S. and Korkut, Anil and Li, Jun and Liang, Han and Ling, Shiyun and Liu, Wenbin and Lu, Yiling and Mills, Gordon B. and Ng, Kwok-Shing and Rao, Arvind and Ryan, Michael and Wang, Jing and Weinstein, John N. and Zhang, Jiexin and Abeshouse, Adam and Armenia, Joshua and Chakravarty, Debyani and Chatila, Walid K. and de Bruijn, Ino and Gao, Jianjiong and Gross, Benjamin E. and Heins, Zachary J. and Kundra, Ritika and La, Konnor and Ladanyi, Marc and Luna, Augustin and Nissan, Moriah G. and Ochoa, Angelica and Phillips, Sarah M. and Reznik, Ed and Sanchez-Vega, Francisco and Sander, Chris and Schultz, Nikolaus and Sheridan, Robert and Sumer, S. Onur and Sun, Yichao and Taylor, Barry S. and Wang, Jioajiao and Zhang, Hongxin and Anur, Pavana and Peto, Myron and Spellman, Paul and Benz, Christopher and Stuart, Joshua M. and Wong, Christopher K. and Yau, Christina and Hayes, D. Neil and Parker, Joel S. and Wilkerson, Matthew D. and Ally, Adrian and Balasundaram, Miruna and Bowlby, Reanne and Brooks, Denise and Carlsen, Rebecca and Chuah, Eric and Dhalla, Noreen and Holt, Robert and Jones, Steven J.M. and Kasaian, Katayoon and Lee, Darlene and Ma, Yussanne and Marra, Marco A. and Mayo, Michael and Moore, Richard A. and Mungall, Andrew J. and Mungall, Karen and Robertson, A. Gordon and Sadeghi, Sara and Schein, Jacqueline E. and Sipahimalani, Payal and Tam, Angela and Thiessen, Nina and Tse, Kane and Wong, Tina and Berger, Ashton C. and Beroukhim, Rameen and Cherniack, Andrew D. and Cibulskis, Carrie and Gabriel, Stacey B. and Gao, Galen F. and Ha, Gavin and Meyerson, Matthew and Schumacher, Steven E. and Shih, Juliann and Kucherlapati, Melanie H. and Kucherlapati, Raju S. and Baylin, Stephen and Cope, Leslie and Danilova, Ludmila and Bootwalla, Moiz S. and Lai, Phillip H. and Maglinte, Dennis T. and Van Den Berg, David J. and Weisenberger, Daniel J. and Auman, J. Todd and Balu, Saianand and Bodenheimer, Tom and Fan, Cheng and Hoadley, Katherine A. and Hoyle, Alan P. and Jefferys, Stuart R. and Jones, Corbin D. and Meng, Shaowu and Mieczkowski, Piotr A. and Mose, Lisle E. and Perou, Amy H. and Perou, Charles M. and Roach, Jeffrey and Shi, Yan and Simons, Janae V. and Skelly, Tara and Soloway, Matthew G. and Tan, Donghui and Veluvolu, Umadevi and Fan, Huihui and Hinoue, Toshinori and Laird, Peter W. and Shen, Hui and Zhou, Wanding and Bellair, Michelle and Chang, Kyle and Covington, Kyle and Creighton, Chad J. and Dinh, Huyen and Doddapaneni, HarshaVardhan and Donehower, Lawrence A. and Drummond, Jennifer and Gibbs, Richard A. and Glenn, Robert and Hale, Walker and Han, Yi and Hu, Jianhong and Korchina, Viktoriya and Lee, Sandra and Lewis, Lora and Li, Wei and Liu, Xiuping and Morgan, Margaret and Morton, Donna and Muzny, Donna and Santibanez, Jireh and Sheth, Margi and Shinbrot, Eve and Wang, Linghua and Wang, Min and Wheeler, David A. and Xi, Liu and Zhao, Fengmei and Hess, Julian and Appelbaum, Elizabeth L. and Bailey, Matthew and Cordes, Matthew G. and Ding, Li and Fronick, Catrina C. and Fulton, Lucinda A. and Fulton, Robert S. and Kandoth, Cyriac and Mardis, Elaine R. and McLellan, Michael D. and Miller, Christopher A. and Schmidt, Heather K. and Wilson, Richard K. and Crain, Daniel and Curley, Erin and Gardner, Johanna and Lau, Kevin and Mallery, David and Morris, Scott and Paulauskis, Joseph and Penny, Robert and Shelton, Candace and Shelton, Troy and Sherman, Mark and Thompson, Eric and Yena, Peggy and Bowen, Jay and Gastier-Foster, Julie M. and Gerken, Mark and Leraas, Kristen M. and Lichtenberg, Tara M. and Ramirez, Nilsa C. and Wise, Lisa and Zmuda, Erik and Corcoran, Niall and Costello, Tony and Hovens, Christopher and Carvalho, Andre L. and de Carvalho, Ana C. and Fregnani, José H. and Longatto-Filho, Adhemar and Reis, Rui M. and Scapulatempo-Neto, Cristovam and Silveira, Henrique C.S. and Vidal, Daniel O. and Burnette, Andrew and Eschbacher, Jennifer and Hermes, Beth and Noss, Ardene and Singh, Rosy and Anderson, Matthew L. and Castro, Patricia D. and Ittmann, Michael and Huntsman, David and Kohl, Bernard and Le, Xuan and Thorp, Richard and Andry, Chris and Duffy, Elizabeth R. and Lyadov, Vladimir and Paklina, Oxana and Setdikova, Galiya and Shabunin, Alexey and Tavobilov, Mikhail and McPherson, Christopher and Warnick, Ronald and Berkowitz, Ross and Cramer, Daniel and Feltmate, Colleen and Horowitz, Neil and Kibel, Adam and Muto, Michael and Raut, Chandrajit P. and Malykh, Andrei and Barnholtz-Sloan, Jill S. and Barrett, Wendi and Devine, Karen and Fulop, Jordonna and Ostrom, Quinn T. and Shimmel, Kristen and Wolinsky, Yingli and Sloan, Andrew E. and De Rose, Agostino and Giuliante, Felice and Goodman, Marc and Karlan, Beth Y. and Hagedorn, Curt H. and Eckman, John and Harr, Jodi and Myers, Jerome and Tucker, Kelinda and Zach, Leigh Anne and Deyarmin, Brenda and Hu, Hai and Kvecher, Leonid and Larson, Caroline and Mural, Richard J. and Somiari, Stella and Vicha, Ales and Zelinka, Tomas and Bennett, Joseph and Iacocca, Mary and Rabeno, Brenda and Swanson, Patricia and Latour, Mathieu and Lacombe, Louis and T{\^{e}}tu, Bernard and Bergeron, Alain and McGraw, Mary and Staugaitis, Susan M. and Chabot, John and Hibshoosh, Hanina and Sepulveda, Antonia and Su, Tao and Wang, Timothy and Potapova, Olga and Voronina, Olga and Desjardins, Laurence and Mariani, Odette and Roman-Roman, Sergio and Sastre, Xavier and Stern, Marc-Henri and Cheng, Feixiong and Signoretti, Sabina and Berchuck, Andrew and Bigner, Darell and Lipp, Eric and Marks, Jeffrey and McCall, Shannon and McLendon, Roger and Secord, Angeles and Sharp, Alexis and Behera, Madhusmita and Brat, Daniel J. and Chen, Amy and Delman, Keith and Force, Seth and Khuri, Fadlo and Magliocca, Kelly and Maithel, Shishir and Olson, Jeffrey J. and Owonikoko, Taofeek and Pickens, Alan and Ramalingam, Suresh and Shin, Dong M. and Sica, Gabriel and Van Meir, Erwin G. and Zhang, Hongzheng and Eijckenboom, Wil and Gillis, Ad and Korpershoek, Esther and Looijenga, Leendert and Oosterhuis, Wolter and Stoop, Hans and van Kessel, Kim E. and Zwarthoff, Ellen C. and Calatozzolo, Chiara and Cuppini, Lucia and Cuzzubbo, Stefania and DiMeco, Francesco and Finocchiaro, Gaetano and Mattei, Luca and Perin, Alessandro and Pollo, Bianca and Chen, Chu and Houck, John and Lohavanichbutr, Pawadee and Hartmann, Arndt and Stoehr, Christine and Stoehr, Robert and Taubert, Helge and Wach, Sven and Wullich, Bernd and Kycler, Witold and Murawa, Dawid and Wiznerowicz, Maciej and Chung, Ki and Edenfield, W. Jeffrey and Martin, Julie and Baudin, Eric and Bubley, Glenn and Bueno, Raphael and De Rienzo, Assunta and Richards, William G. and Kalkanis, Steven and Mikkelsen, Tom and Noushmehr, Houtan and Scarpace, Lisa and Girard, Nicolas and Aymerich, Marta and Campo, Elias and Gin{\'{e}}, Eva and Guillermo, Armando López and Van Bang, Nguyen and Hanh, Phan Thi and Phu, Bui Duc and Tang, Yufang and Colman, Howard and Evason, Kimberley and Dottino, Peter R. and Martignetti, John A. and Gabra, Hani and Juhl, Hartmut and Akeredolu, Teniola and Stepa, Serghei and Hoon, Dave and Ahn, Keunsoo and Kang, Koo Jeong and Beuschlein, Felix and Breggia, Anne and Birrer, Michael and Bell, Debra and Borad, Mitesh and Bryce, Alan H. and Castle, Erik and Chandan, Vishal and Cheville, John and Copland, John A. and Farnell, Michael and Flotte, Thomas and Giama, Nasra and Ho, Thai and Kendrick, Michael and Kocher, Jean-Pierre and Kopp, Karla and Moser, Catherine and Nagorney, David and O’Brien, Daniel and O’Neill, Brian Patrick and Patel, Tushar and Petersen, Gloria and Que, Florencia and Rivera, Michael and Roberts, Lewis and Smallridge, Robert and Smyrk, Thomas and Stanton, Melissa and Thompson, R. Houston and Torbenson, Michael and Yang, Ju Dong and Zhang, Lizhi and Brimo, Fadi and Ajani, Jaffer A. and Gonzalez, Ana Maria Angulo and Behrens, Carmen and Bondaruk, Jolanta and Broaddus, Russell and Czerniak, Bogdan and Esmaeli, Bita and Fujimoto, Junya and Gershenwald, Jeffrey and Guo, Charles and Lazar, Alexander J. and Logothetis, Christopher and Meric-Bernstam, Funda and Moran, Cesar and Ramondetta, Lois and Rice, David and Sood, Anil and Tamboli, Pheroze and Thompson, Timothy and Troncoso, Patricia and Tsao, Anne and Wistuba, Ignacio and Carter, Candace and Haydu, Lauren and Hersey, Peter and Jakrot, Valerie and Kakavand, Hojabr and Kefford, Richard and Lee, Kenneth and Long, Georgina and Mann, Graham and Quinn, Michael and Saw, Robyn and Scolyer, Richard and Shannon, Kerwin and Spillane, Andrew and Stretch, Onathan and Synott, Maria and Thompson, John and Wilmott, James and Al-Ahmadie, Hikmat and Chan, Timothy A. and Ghossein, Ronald and Gopalan, Anuradha and Levine, Douglas A. and Reuter, Victor and Singer, Samuel and Singh, Bhuvanesh and Tien, Nguyen Viet and Broudy, Thomas and Mirsaidi, Cyrus and Nair, Praveen and Drwiega, Paul and Miller, Judy and Smith, Jennifer and Zaren, Howard and Park, Joong-Won and Hung, Nguyen Phi and Kebebew, Electron and Linehan, W. Marston and Metwalli, Adam R. and Pacak, Karel and Pinto, Peter A. and Schiffman, Mark and Schmidt, Laura S. and Vocke, Cathy D. and Wentzensen, Nicolas and Worrell, Robert and Yang, Hannah and Moncrieff, Marc and Goparaju, Chandra and Melamed, Jonathan and Pass, Harvey and Botnariuc, Natalia and Caraman, Irina and Cernat, Mircea and Chemencedji, Inga and Clipca, Adrian and Doruc, Serghei and Gorincioi, Ghenadie and Mura, Sergiu and Pirtac, Maria and Stancul, Irina and Tcaciuc, Diana and Albert, Monique and Alexopoulou, Iakovina and Arnaout, Angel and Bartlett, John and Engel, Jay and Gilbert, Sebastien and Parfitt, Jeremy and Sekhon, Harman and Thomas, George and Rassl, Doris M. and Rintoul, Robert C. and Bifulco, Carlo and Tamakawa, Raina and Urba, Walter and Hayward, Nicholas and Timmers, Henri and Antenucci, Anna and Facciolo, Francesco and Grazi, Gianluca and Marino, Mirella and Merola, Roberta and de Krijger, Ronald and Gimenez-Roqueplo, Anne-Paule and Pich{\'{e}}, Alain and Chevalier, Simone and McKercher, Ginette and Birsoy, Kivanc and Barnett, Gene and Brewer, Cathy and Farver, Carol and Naska, Theresa and Pennell, Nathan A. and Raymond, Daniel and Schilero, Cathy and Smolenski, Kathy and Williams, Felicia and Morrison, Carl and Borgia, Jeffrey A. and Liptay, Michael J. and Pool, Mark and Seder, Christopher W. and Junker, Kerstin and Omberg, Larsson and Dinkin, Mikhail and Manikhas, George and Alvaro, Domenico and Bragazzi, Maria Consiglia and Cardinale, Vincenzo and Carpino, Guido and Gaudio, Eugenio and Chesla, David and Cottingham, Sandra and Dubina, Michael and Moiseenko, Fedor and Dhanasekaran, Renumathy and Becker, Karl-Friedrich and Janssen, Klaus-Peter and Slotta-Huspenina, Julia and Abdel-Rahman, Mohamed H. and Aziz, Dina and Bell, Sue and Cebulla, Colleen M. and Davis, Amy and Duell, Rebecca and Elder, J. Bradley and Hilty, Joe and Kumar, Bahavna and Lang, James and Lehman, Norman L. and Mandt, Randy and Nguyen, Phuong and Pilarski, Robert and Rai, Karan and Schoenfield, Lynn and Senecal, Kelly and Wakely, Paul and Hansen, Paul and Lechan, Ronald and Powers, James and Tischler, Arthur and Grizzle, William E. and Sexton, Katherine C. and Kastl, Alison and Henderson, Joel and Porten, Sima and Waldmann, Jens and Fassnacht, Martin and Asa, Sylvia L. and Schadendorf, Dirk and Couce, Marta and Graefen, Markus and Huland, Hartwig and Sauter, Guido and Schlomm, Thorsten and Simon, Ronald and Tennstedt, Pierre and Olabode, Oluwole and Nelson, Mark and Bathe, Oliver and Carroll, Peter R. and Chan, June M. and Disaia, Philip and Glenn, Pat and Kelley, Robin K. and Landen, Charles N. and Phillips, Joanna and Prados, Michael and Simko, Jeffry and Smith-McCune, Karen and VandenBerg, Scott and Roggin, Kevin and Fehrenbach, Ashley and Kendler, Ady and Sifri, Suzanne and Steele, Ruth and Jimeno, Antonio and Carey, Francis and Forgie, Ian and Mannelli, Massimo and Carney, Michael and Hernandez, Brenda and Campos, Benito and Herold-Mende, Christel and Jungk, Christin and Unterberg, Andreas and von Deimling, Andreas and Bossler, Aaron and Galbraith, Joseph and Jacobus, Laura and Knudson, Michael and Knutson, Tina and Ma, Deqin and Milhem, Mohammed and Sigmund, Rita and Godwin, Andrew K. and Madan, Rashna and Rosenthal, Howard G. and Adebamowo, Clement and Adebamowo, Sally N. and Boussioutas, Alex and Beer, David and Giordano, Thomas and Mes-Masson, Anne-Marie and Saad, Fred and Bocklage, Therese and Landrum, Lisa and Mannel, Robert and Moore, Kathleen and Moxley, Katherine and Postier, Russel and Walker, Joan and Zuna, Rosemary and Feldman, Michael and Valdivieso, Federico and Dhir, Rajiv and Luketich, James and Pinero, Edna M. Mora and Quintero-Aguilo, Mario and Carlotti, Carlos Gilberto and Dos Santos, Jose Sebastião and Kemp, Rafael and Sankarankuty, Ajith and Tirapelli, Daniela and Catto, James and Agnew, Kathy and Swisher, Elizabeth and Creaney, Jenette and Robinson, Bruce and Shelley, Carl Simon and Godwin, Eryn M. and Kendall, Sara and Shipman, Cassaundra and Bradford, Carol and Carey, Thomas and Haddad, Andrea and Moyer, Jeffey and Peterson, Lisa and Prince, Mark and Rozek, Laura and Wolf, Gregory and Bowman, Rayleen and Fong, Kwun M. and Yang, Ian and Korst, Robert and Rathmell, W. Kimryn and Fantacone-Campbell, J. Leigh and Hooke, Jeffrey A. and Kovatich, Albert J. and Shriver, Craig D. and DiPersio, John and Drake, Bettina and Govindan, Ramaswamy and Heath, Sharon and Ley, Timothy and Van Tine, Brian and Westervelt, Peter and Rubin, Mark A. and Lee, Jung Il and Aredes, Natália D. and Mariamidze, Armaz},
    number = {4},
    month = {4},
    pages = {812--830},
    volume = {48},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/29628290 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5982584 https://linkinghub.elsevier.com/retrieve/pii/S1074761318301213},
    doi = {10.1016/j.immuni.2018.03.023},
    issn = {10747613},
    pmid = {29628290},
    keywords = {cancer genomics, immune subtypes, immuno-oncology, immunomodulatory, immunotherapy, integrative network analysis, tumor immunology, tumor microenvironment}
}

@article{Menten2018,
    title = {{The impact of 2D cine MR imaging parameters on automated tumor and organ localization for MR-guided real-time adaptive radiotherapy}},
    year = {2018},
    journal = {Physics in Medicine {\&} Biology},
    author = {Menten, Martin J and Fast, Martin F and Wetscherek, Andreas and Rank, Christopher M and Kachelrie{\ss}, Marc and Collins, David J and Nill, Simeon and Oelfke, Uwe},
    number = {23},
    month = {11},
    pages = {235005},
    volume = {63},
    publisher = {IOP Publishing},
    url = {http://stacks.iop.org/0031-9155/63/i=23/a=235005?key=crossref.20d187d38a711cc9394543b2cb4c396e},
    doi = {10.1088/1361-6560/aae74d},
    issn = {1361-6560}
}

@article{Moody2001,
    title = {{The impact of the MIT-BIH arrhythmia database.}},
    year = {2001},
    journal = {IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine {\&} Biology Society},
    author = {Moody, G B and Mark, R G},
    number = {3},
    pages = {45--50},
    volume = {20},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/11446209},
    issn = {0739-5175},
    pmid = {11446209}
}

@misc{Vijayananthan2008,
    title = {{The importance of Good Clinical Practice guidelines and its role in clinical trials}},
    year = {2008},
    booktitle = {Biomedical Imaging and Intervention Journal},
    author = {Vijayananthan, Anushya and Nawawi, O.},
    number = {1},
    month = {1},
    volume = {4},
    publisher = {Department of Biomedical Imaging, University of Malaya},
    url = {/pmc/articles/PMC3097692/?report=abstract https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3097692/},
    doi = {10.2349/biij.4.1.e5},
    issn = {18235530},
    keywords = {Clinical practice, Ethical, Historical, International}
}

@article{Camp1997,
    title = {{The incredible shrinking pipeline}},
    year = {1997},
    journal = {Communications of the ACM},
    author = {Camp, Tracy},
    number = {10},
    pages = {103–110},
    volume = {40},
    url = {http://dl.acm.org/citation.cfm?id=262813 http://inside.mines.edu/~tcamp/paper/paper.html}
}

@inproceedings{Bomberger1992,
    title = {{The KeyKOS nanokernel architecture}},
    year = {1992},
    author = {Bomberger, A.C. and Frantz, A.P. and Frantz, W.S. and Hardy, A.C. and Hardy, N. and Landau, C.R. and Shapiro, J.S.},
    pages = {95–112},
    url = {http://pdos.csail.mit.edu/6.858/2011/readings/keykos.pdf}
}

@article{Bilic2019,
    title = {{The Liver Tumor Segmentation Benchmark (LiTS)}},
    year = {2019},
    author = {Bilic, Patrick and Christ, Patrick Ferdinand and Vorontsov, Eugene and Chlebus, Grzegorz and Chen, Hao and Dou, Qi and Fu, Chi-Wing and Han, Xiao and Heng, Pheng-Ann and Hesser, Jürgen and Kadoury, Samuel and Konopczynski, Tomasz and Le, Miao and Li, Chunming and Li, Xiaomeng and Lipkov{\`{a}}, Jana and Lowengrub, John and Meine, Hans and Moltz, Jan Hendrik and Pal, Chris and Piraud, Marie and Qi, Xiaojuan and Qi, Jin and Rempfler, Markus and Roth, Karsten and Schenk, Andrea and Sekuboyina, Anjany and Vorontsov, Eugene and Zhou, Ping and H{\"{u}}lsemeyer, Christian and Beetz, Marcel and Ettlinger, Florian and Gruen, Felix and Kaissis, Georgios and Loh{\"{o}}fer, Fabian and Braren, Rickmer and Holch, Julian and Hofmann, Felix and Sommer, Wieland and Heinemann, Volker and Jacobs, Colin and Mamani, Gabriel Efrain Humpire and van Ginneken, Bram and Chartrand, Gabriel and Tang, An and Drozdzal, Michal and Ben-Cohen, Avi and Klang, Eyal and Amitai, Marianne M. and Konen, Eli and Greenspan, Hayit and Moreau, Johan and Hostettler, Alexandre and Soler, Luc and Vivanti, Refael and Szeskin, Adi and Lev-Cohain, Naama and Sosna, Jacob and Joskowicz, Leo and Menze, Bjoern H.},
    month = {1},
    url = {http://arxiv.org/abs/1901.04056},
    arxivId = {1901.04056}
}

@inproceedings{Georgiev2012,
    title = {{The most dangerous code in the world: validating SSL certificates in non-browser software}},
    year = {2012},
    author = {Georgiev, M. and Iyengar, S. and Jana, S. and Anubhai, R. and Boneh, D. and Shmatikov, V.},
    pages = {38--49},
    publisher = {ACM},
    isbn = {1450316514}
}

@article{Menze2015,
    title = {{The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)}},
    year = {2015},
    journal = {IEEE Transactions on Medical Imaging},
    author = {Menze, Bjoern H. and Jakab, Andras and Bauer, Stefan and Kalpathy-Cramer, Jayashree and Farahani, Keyvan and Kirby, Justin and Burren, Yuliya and Porz, Nicole and Slotboom, Johannes and Wiest, Roland and Lanczi, Levente and Gerstner, Elizabeth and Weber, Marc-Andre and Arbel, Tal and Avants, Brian B. and Ayache, Nicholas and Buendia, Patricia and Collins, D. Louis and Cordier, Nicolas and Corso, Jason J. and Criminisi, Antonio and Das, Tilak and Delingette, Herve and Demiralp, Cagatay and Durst, Christopher R. and Dojat, Michel and Doyle, Senan and Festa, Joana and Forbes, Florence and Geremia, Ezequiel and Glocker, Ben and Golland, Polina and Guo, Xiaotao and Hamamci, Andac and Iftekharuddin, Khan M. and Jena, Raj and John, Nigel M. and Konukoglu, Ender and Lashkari, Danial and Mariz, Jose Antonio and Meier, Raphael and Pereira, Sergio and Precup, Doina and Price, Stephen J. and Raviv, Tammy Riklin and Reza, Syed M. S. and Ryan, Michael and Sarikaya, Duygu and Schwartz, Lawrence and Shin, Hoo-Chang and Shotton, Jamie and Silva, Carlos A. and Sousa, Nuno and Subbanna, Nagesh K. and Szekely, Gabor and Taylor, Thomas J. and Thomas, Owen M. and Tustison, Nicholas J. and Unal, Gozde and Vasseur, Flor and Wintermark, Max and Ye, Dong Hye and Zhao, Liang and Zhao, Binsheng and Zikic, Darko and Prastawa, Marcel and Reyes, Mauricio and Van Leemput, Koen},
    number = {10},
    month = {10},
    pages = {1993--2024},
    volume = {34},
    url = {http://ieeexplore.ieee.org/document/6975210/},
    doi = {10.1109/TMI.2014.2377694},
    issn = {0278-0062}
}

@inproceedings{pmlr-v15-larochelle11a,
    title = {{The Neural Autoregressive Distribution Estimator}},
    year = {2011},
    booktitle = {Proceedings of the Fourteenth International Conference on Artificial Intelligence and Statistics},
    author = {Larochelle, Hugo and Murray, Iain},
    series = {Proceedings of Machine Learning Research},
    url = {http://proceedings.mlr.press/v15/larochelle11a.html}
}

@inproceedings{Ross2017lasso,
    title = {{The Neural LASSO: Local Linear Sparsity for Interpretable Explanations}},
    year = {2017},
    booktitle = {Neural Information Processing Systems (NIPS) Workshop on Transparent and Interpretable Machine Learning in Safety Critical Environments},
    author = {Ross, Andrew and Lage, Isaac and Doshi-Velez, Finale}
}

@misc{Xiph.Org2010,
    title = {{The Ogg container format}},
    year = {2010},
    author = {{Xiph.Org}},
    url = {http://xiph.org/ogg/}
}

@article{Hermann2019,
    title = {{The Origins and Prevalence of Texture Bias in Convolutional Neural Networks}},
    year = {2019},
    author = {Hermann, Katherine L. and Chen, Ting and Kornblith, Simon},
    month = {11},
    url = {http://arxiv.org/abs/1911.09071},
    arxivId = {1911.09071}
}

@misc{pascal-voc-2009,
    title = {{The PASCAL Visual Object Classes Challenge 2009 (VOC2009) Results}},
    year = {2009},
    author = {Everingham, M and Van{\~{}}Gool, L and Williams, C K I and Winn, J and Zisserman, A},
    howpublished = {http://www.pascal-network.org/challenges/VOC/voc2009/workshop/index.html}
}

@article{DeThe1991,
    title = {{The PML-RAR alpha fusion mRNA generated by the t(15;17) translocation in acute promyelocytic leukemia encodes a functionally altered RAR.}},
    year = {1991},
    journal = {Cell},
    author = {de Th{\'{e}}, H and Lavau, C and Marchio, A and Chomienne, C and Degos, L and Dejean, A},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/1652369},
    issn = {0092-8674},
    pmid = {1652369}
}

@article{Seashore1936,
    title = {{The Psychology of Music. III. The Quality of Tone: (1) Timbre}},
    shorttitle = {The Psychology of Music. III. The Quality of Tone},
    year = {1936},
    journal = {Music Educators Journal},
    author = {Seashore, Carl E.},
    number = {1},
    pages = {24--26},
    volume = {23},
    url = {http://www.jstor.org/stable/3384948},
    doi = {10.2307/3384948},
    issn = {00274321}
}

@article{10.1148/radiol.2020201365,
    title = {{The Role of Chest Imaging in Patient Management during the COVID-19 Pandemic: A Multinational Consensus Statement from the Fleischner Society}},
    year = {2020},
    journal = {Radiology},
    author = {Rubin, Geoffrey D. and Haramati, Linda B. and Kanne, Jeffrey P. and Schluger, Neil W. and Yim, Jae-Joon and Anderson, Deverick J. and Altes, Talissa and Desai, Sujal R. and Goo, Jin Mo and Inoue, Yoshikazu and Luo, Fengming and Prokop, Mathias and Richeldi, Luca and Tomiyama, Noriyuki and Leung, Ann N. and Ryerson, Christopher J. and Sverzellati, Nicola and Raoof, Suhail and Volpi, Annalisa and Martin, Ian B. K. and Kong, Christina and Bush, Andrew and Goldin, Jonathan and Humbert, Marc and Kauczor, Hans-Ulrich and Mazzone, Peter J. and Remy-Jardin, Martine and Schaefer-Prokop, Cornelia M. and Wells, Athol U.},
    url = {http://pubs.rsna.org/doi/10.1148/radiol.2020201365},
    doi = {10.1148/radiol.2020201365},
    issn = {0033-8419}
}

@article{Adelson1985,
    title = {{The Role of Domain Expenence in Software Design}},
    year = {1985},
    journal = {IEEE Transactions on Software Engineering},
    author = {Adelson, B. and Soloway, E.},
    number = {11},
    month = {11},
    pages = {1351--1360},
    volume = {SE-11},
    url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=1701951},
    doi = {10.1109/TSE.1985.231883},
    issn = {0098-5589}
}

@article{Berners-Lee2001,
    title = {{The semantic web}},
    year = {2001},
    journal = {Scientific american},
    author = {Berners-Lee, Tim and Hendler, James and Lassila, Ora},
    number = {5},
    pages = {28–37},
    volume = {284},
    url = {http://isel2918929391.googlecode.com/svn-history/r347/trunk/RPC/Slides/p01_theSemanticWeb.pdf}
}

@article{berners-lee_semantic_2001,
    title = {{The semantic web}},
    year = {2001},
    journal = {Scientific american},
    author = {Berners-Lee, Tim and Hendler, James and Lassila, Ora},
    url = {http://isel2918929391.googlecode.com/svn-history/r347/trunk/RPC/Slides/p01_theSemanticWeb.pdf}
}

@inproceedings{PabloMartinez2017,
    title = {{The STAFF III Database: ECGs Recorded During Acutely Induced Myocardial Ischemia}},
    year = {2017},
    booktitle = {Computing in Cardiology (CinC)},
    author = {Pablo Mart{\'{i}}nez, Juan and Pahlm, Olle and Ringborn, Michael and Warren, Stafford and Laguna, Pablo and S{\"{o}}rnmo, Leif},
    url = {http://www.cinc.org/archives/2017/pdf/266-133.pdf},
    doi = {10.13026/C20P4H}
}

@inproceedings{Tanaka1986,
    title = {{The Stratigraphy of Mars}},
    year = {1986},
    author = {Tanaka, K. L},
    url = {http://adsabs.harvard.edu/abs/1986LPSC...17..139T},
    address = {Houston, Texas}
}

@article{Lagesen2007,
    title = {{The Strength of Numbers Strategies to Include Women into Computer Science}},
    year = {2007},
    journal = {Social Studies of Science},
    author = {Lagesen, Vivian Anette},
    number = {1},
    month = {2},
    pages = {67--92},
    volume = {37},
    url = {http://sss.sagepub.com/content/37/1/67 http://sss.sagepub.com/content/37/1/67.full.pdf},
    doi = {10.1177/0306312706063788},
    issn = {0306-3127, 1460-3659},
    language = {en}
}

@article{doi:10.7326/0003-4819-122-3-199502010-00007,
    title = {{The support prognostic model: Objective estimates of survival for seriously ill hospitalized adults}},
    year = {1995},
    journal = {Annals of Internal Medicine},
    author = {WA, Knaus and FE, Harrell and J, Lynn and {et al}},
    number = {3},
    pages = {191--203},
    volume = {122},
    url = {+ http://dx.doi.org/10.7326/0003-4819-122-3-199502010-00007},
    doi = {10.7326/0003-4819-122-3-199502010-00007}
}

@article{Lavau1994,
    title = {{The t(15;17) translocation in acute promyelocytic leukemia.}},
    year = {1994},
    journal = {Leukemia},
    author = {Lavau, C and Dejean, A},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/7934155},
    issn = {0887-6924},
    pmid = {7934155}
}

@article{Tanaka1988,
    title = {{The tree-to-tree editing problem.}},
    year = {1988},
    journal = {International Journal of Pattern Recognition and Artificial Intelligence},
    author = {Tanaka, E. and Tanaka, K.}
}

@article{Tanaka1988b,
    title = {{The tree-to-tree editing problem.}},
    year = {1988},
    journal = {INT. J. PATTERN RECOG. ARTIF. IN℡L.},
    author = {Tanaka, E. and Tanaka, K.},
    number = {2},
    pages = {221–240},
    volume = {2}
}

@article{Welch1967,
    title = {{The Use of Fast Fourier Transform for the Estimation of Power Spectra: A Method Based on Time Averaging Over Short, Modified Periodograms}},
    year = {1967},
    journal = {Transactions on Audio and Electroacoustics},
    author = {Welch, Peter D.},
    url = {http://ieeexplore.ieee.org/document/1161901/},
    doi = {10.1109/TAU.1967.1161901}
}

@inproceedings{Gibson2005,
    title = {{The volume and evolution of web page templates}},
    year = {2005},
    author = {Gibson, David and Punera, Kunal and Tomkins, Andrew},
    pages = {830–839},
    url = {http://dl.acm.org/citation.cfm?id=1062763 http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.86.7191&rep=rep1&type=pdf}
}

@inproceedings{gibson_volume_2005,
    title = {{The volume and evolution of web page templates}},
    year = {2005},
    booktitle = {World Wide Web},
    author = {Gibson, David and Punera, Kunal and Tomkins, Andrew},
    url = {http://dl.acm.org/citation.cfm?id=1062763}
}

@article{Hall2009,
    title = {{The WEKA data mining software: an update}},
    shorttitle = {The WEKA data mining software},
    year = {2009},
    journal = {ACM SIGKDD Explorations Newsletter},
    author = {Hall, M. and Frank, E. and Holmes, G. and Pfahringer, B. and Reutemann, P. and Witten, I. H},
    number = {1},
    pages = {10--18},
    volume = {11},
    issn = {1931-0145}
}

@book{Katzenbach2003,
    title = {{The Wisdom of Teams: Creating the High-Performance Organization}},
    shorttitle = {The Wisdom of Teams},
    year = {2003},
    author = {Katzenbach, Jon R. and Smith, Douglas K.},
    month = {3},
    publisher = {Harper Paperbacks},
    url = {http://www.amazon.com/dp/0060522003},
    isbn = {0060522003}
}

@article{Turing1950,
    title = {{The Word Problem in Semi-Groups With Cancellation}},
    year = {1950},
    journal = {The Annals of Mathematics},
    author = {Turing, A. M.},
    number = {2},
    pages = {491--505},
    series = {Second Series},
    volume = {52},
    url = {http://www.jstor.org/stable/1969481 http://www.jstor.org/stable/pdfplus/1969481.pdf?acceptTC=true},
    doi = {10.2307/1969481},
    issn = {0003-486X}
}

@article{theano,
    title = {{Theano: A Python framework for fast computation of mathematical expressions}},
    year = {2016},
    journal = {arXiv e-prints},
    author = {{Theano Development Team}},
    url = {http://arxiv.org/abs/1605.02688}
}

@article{Gabor1946,
    title = {{Theory of communication.}},
    year = {1946},
    journal = {J Institute Electrical Engineers},
    author = {Gabor, D},
    volume = {93}
}

@article{Powers2007,
    title = {{Through the looking glass: teaching CS0 with Alice}},
    shorttitle = {Through the looking glass},
    year = {2007},
    journal = {ACM SIGCSE Bulletin},
    author = {Powers, K. and Ecott, S. and Hirshfield, L. M.},
    number = {1},
    pages = {213–217},
    volume = {39},
    url = {http://dl.acm.org/citation.cfm?id=1227386 http://www.cra.org/Activities/craw_archive/dmp/awards/2006/Ecott/powers.pdf}
}

@misc{Cohen2012c,
    title = {{Throw! (The Game Platform)}},
    year = {2012},
    author = {Cohen, Joseph Paul},
    url = {http://throw-platform.github.com/}
}

@article{Pan2020,
    title = {{Time Course of Lung Changes On Chest CT During Recovery From 2019 Novel Coronavirus (COVID-19) Pneumonia}},
    year = {2020},
    journal = {Radiology},
    author = {Pan, Feng and Ye, Tianhe and Sun, Peng and Gui, Shan and Liang, Bo and Li, Lingli and Zheng, Dandan and Wang, Jiazheng and Hesketh, Richard L. and Yang, Lian and Zheng, Chuansheng},
    month = {2},
    pages = {200370},
    publisher = { Radiological Society of North America },
    url = {http://pubs.rsna.org/doi/10.1148/radiol.2020200370},
    doi = {10.1148/radiol.2020200370},
    issn = {0033-8419}
}

@article{Alm2002,
    title = {{Time-frequency analysis of musical instruments}},
    year = {2002},
    journal = {SIAM review},
    author = {Alm, J. F and Walker, J. S},
    number = {3},
    pages = {457–476},
    volume = {44},
    issn = {0036-1445}
}

@inproceedings{Cohen2013a,
    title = {{To Introduce Computer Science in One Day, The Throw Platform}},
    year = {2013},
    author = {Cohen, Joseph Paul and Ding, Wei and Boisvert, Deborah},
    month = {3},
    address = {Princeton, New Jersey, USA}
}

@article{Kim2013,
    title = {{TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions}},
    year = {2013},
    journal = {Genome Biology},
    author = {Kim, Daehwan and Pertea, Geo and Trapnell, Cole and Pimentel, Harold and Kelley, Ryan and Salzberg, Steven L},
    number = {4},
    pages = {R36},
    volume = {14},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/23618408 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4053844 http://genomebiology.biomedcentral.com/articles/10.1186/gb-2013-14-4-r36},
    doi = {10.1186/gb-2013-14-4-r36},
    issn = {1465-6906},
    pmid = {23618408}
}

@misc{deleu2019torchmeta,
    title = {{Torchmeta: A Meta-Learning library for PyTorch}},
    year = {2019},
    author = {Deleu, Tristan and W{\"{u}}rfl, Tobias and Samiei, Mandana and Cohen, Joseph Paul and Bengio, Yoshua},
    url = {https://arxiv.org/abs/1909.06576}
}

@article{Cohen2020xrv,
    title = {{TorchXRayVision: A library of chest X-ray datasets and models}},
    year = {2020},
    author = {Cohen, Joseph Paul and Viviano, Joseph and Hashir, Mohammad and Bertrand, Hadrien},
    url = {https://github.com/mlmed/torchxrayvision}
}

@inproceedings{Koller1996,
    title = {{Toward optimal feature selection}},
    year = {1996},
    author = {Koller, D. and Sahami, M.},
    pages = {284--292},
    address = {San Francisco, CA}
}

@article{salisbury2017toward,
    title = {{Toward Scalable Social Alt Text: Conversational Crowdsourcing as a Tool for Refining Vision-to-Language Technology for the Blind}},
    year = {2017},
    journal = {Proceedings of HCOMP 2017},
    author = {Salisbury, Elliot and Kamar, Ece and Morris, Meredith Ringel}
}

@article{Zandehshahvar2020COVID,
    title = {{Toward Understanding COVID-19 Pneumonia: A Deep-learning-based Approach for Severity Analysis and Monitoring the Disease}},
    year = {2020},
    journal = {medRxiv},
    author = {Zandehshahvar, Mohammadreza and Van Assen, Marly and Maleki, Hossein and Kiarashi, Yashar and De Cecco, Carlo N and Adibi, Ali},
    month = {11},
    pages = {2020.11.24.20235887},
    publisher = {Cold Spring Harbor Laboratory Press},
    url = {https://doi.org/10.1101/2020.11.24.20235887},
    doi = {10.1101/2020.11.24.20235887},
    keywords = {COVID-19, X-ray, deep learning, dimen-sionality reduction, interpretable models, monitoring progression, severity analysis}
}

@article{Costa2017,
    title = {{Towards Adversarial Retinal Image Synthesis}},
    year = {2017},
    author = {Costa, Pedro and Galdran, Adrian and Meyer, Maria Inês and Abr{\`{a}}moff, Michael David and Niemeijer, Meindert and Mendon{\c{c}}a, Ana Maria and Campilho, Aurélio},
    month = {1},
    url = {http://arxiv.org/abs/1701.08974},
    arxivId = {1701.08974}
}

@article{Jiang2020severity,
    title = {{Towards an Artificial Intelligence Framework for Data-Driven Prediction of Coronavirus Clinical Severity}},
    year = {2020},
    journal = {Computers, Materials {\&} Continua},
    author = {Jiang, Xiangao and Coffee, Megan and Bari, Anasse and Wang, Junzhang and Jiang, Xinyue and Huang, Jianping and Shi, Jichan and Dai, Jianyi and Cai, Jing and Zhang, Tianxiao and Wu, Zhengxing and He, Guiqing and Huang, Yitong},
    number = {3},
    pages = {537--551},
    volume = {62},
    publisher = {Computers, Materials and Continua (Tech Science Press)},
    doi = {10.32604/cmc.2020.010691},
    issn = {1546-2226}
}

@article{cmc.2020.010691,
    title = {{Towards an Artificial Intelligence Framework for Data-Driven Prediction of Coronavirus Clinical Severity}},
    year = {2020},
    journal = {Computers, Materials {\&} Continua},
    author = {Xiangao Jiang Megan Coffee, Anasse Bari Junzhang Wang Xinyue Jiang Jianping Huang Jichan Shi Jianyi Dai Jing Cai Tianxiao Zhang Zhengxing Wu Guiqing He Yitong Huang},
    number = {1},
    pages = {537--551},
    volume = {63},
    url = {http://www.techscience.com/cmc/v63n1/38464},
    doi = {10.32604/cmc.2020.010691},
    issn = {1546-2226}
}

@article{Zhou2005,
    title = {{Towards automated cellular image segmentation for RNAi genome-wide screening.}},
    year = {2005},
    journal = {Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv},
    author = {Zhou, X and Liu, K Y and Bradley, P and Perrimon, N and Wong, S T},
    volume = {8}
}

@article{Weidner1995,
    title = {{Towards automatic building extraction from high-resolution digital elevation models}},
    year = {1995},
    journal = {ISPRS journal of Photogrammetry and Remote Sensing},
    author = {Weidner, Uwe and F{\"{o}}rstner, Wolfgang},
    number = {4},
    pages = {38–49},
    volume = {50},
    url = {http://www.sciencedirect.com/science/article/pii/092427169598236S}
}

@article{Young1998,
    title = {{Towards automatic cell identification in DIC microscopy}},
    year = {1998},
    journal = {Journal of Microscopy},
    author = {Young, D. and Glasbey, C. A. and Gray, A. J. and Martin, N. J.},
    isbn = {0022-2720 (Print)},
    doi = {10.1046/j.1365-2818.1998.00397.x},
    issn = {00222720},
    pmid = {9853375},
    keywords = {Automated microscopy, Differential interference contrast microscopy, Templates}
}

@article{Li2004,
    title = {{Towards automation of palynology 2: The use of texture measures and neural network analysis for automated identification of optical images of pollen grains}},
    year = {2004},
    journal = {Journal of Quaternary Science},
    author = {Li, P and Treloar, W. J. and Flenley, J. R. and Empson, L.},
    number = {8},
    pages = {755--762},
    volume = {19},
    url = {http://onlinelibrary.wiley.com/doi/10.1002/jqs.874/full},
    isbn = {0267-8179},
    doi = {10.1002/jqs.874},
    issn = {02678179},
    keywords = {Automation, Classification, Neural networks, Pollen, Texture measures}
}

@inproceedings{Ancona2017UnderstandGradientAttrib,
    title = {{Towards better understanding of gradient-based attribution methods for deep neural networks}},
    year = {2018},
    booktitle = {International Conference on Learning Representations},
    author = {Ancona, Marco and Ceolini, Enea and {\"{O}}ztireli, Cengiz and Gross, Markus},
    month = {11},
    url = {http://arxiv.org/abs/1711.06104},
    arxivId = {1711.06104}
}

@inproceedings{Dutil2018,
    title = {{Towards Gene Expression Convolutions using Gene Interaction Graphs}},
    year = {2018},
    booktitle = {International Conference on Machine Learning (ICML) Workshop on Computational Biology (WCB)},
    author = {Dutil, Francis and Cohen, Joseph Paul and Weiss, Martin and Derevyanko, Georgy and Bengio, Yoshua},
    url = {http://arxiv.org/abs/1806.06975},
    arxivId = {1806.06975}
}

@article{Meinke2019,
    title = {{Towards neural networks that provably know when they don't know}},
    year = {2019},
    author = {Meinke, Alexander and Hein, Matthias},
    month = {9},
    url = {http://arxiv.org/abs/1909.12180},
    arxivId = {1909.12180}
}

@inproceedings{Bendale2016,
    title = {{Towards Open Set Deep Networks}},
    year = {2016},
    booktitle = {Computer Vision and Pattern Recognition (CVPR)},
    author = {Bendale, Abhijit and Boult, Terrance},
    month = {11},
    url = {http://arxiv.org/abs/1511.06233},
    arxivId = {1511.06233}
}

@article{Joshi2019ActionableExplanations,
    title = {{Towards Realistic Individual Recourse and Actionable Explanations in Black-Box Decision Making Systems}},
    year = {2019},
    author = {Joshi, Shalmali and Koyejo, Oluwasanmi and Vijitbenjaronk, Warut and Kim, Been and Ghosh, Joydeep},
    month = {7},
    url = {http://arxiv.org/abs/1907.09615},
    arxivId = {1907.09615}
}

@article{Chavan2013,
    title = {{Towards the integration, annotation and association of historical microarray experiments with RNA-seq}},
    year = {2013},
    journal = {BMC Bioinformatics},
    author = {Chavan, Shweta S and Bauer, Michael A and Peterson, Erich A and Heuck, Christoph J and Johann, Donald J},
    number = {Suppl 14},
    pages = {S4},
    volume = {14},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/24268045 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3851429 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-S14-S4},
    doi = {10.1186/1471-2105-14-S14-S4},
    issn = {1471-2105},
    pmid = {24268045}
}

@article{Chavan2013a,
    title = {{Towards the integration, annotation and association of historical microarray experiments with RNA-seq}},
    year = {2013},
    journal = {BMC Bioinformatics},
    author = {Chavan, Shweta S and Bauer, Michael A and Peterson, Erich A and Heuck, Christoph J and Johann, Donald J},
    number = {Suppl 14},
    pages = {S4},
    volume = {14},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/24268045 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3851429 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-S14-S4},
    doi = {10.1186/1471-2105-14-S14-S4},
    issn = {1471-2105},
    pmid = {24268045}
}

@unpublished{Trofimov2018,
    title = {{Towards the Latent Transcriptome}},
    year = {2018},
    author = {Trofimov, Assya and Dutil, Francis and Perreault, Claude and Lemieux, Sebastien and Bengio, Yoshua and Cohen, Joseph Paul},
    month = {10},
    url = {http://arxiv.org/abs/1810.03442},
    arxivId = {1810.03442}
}

@article{Parameswaran2010,
    title = {{Towards the Web of Concepts : Extracting Concepts from Large Datasets}},
    shorttitle = {Towards the Web of Concepts},
    year = {2010},
    journal = {Proceedings of the VLDB Endowment},
    author = {Parameswaran, Aditya and Garcia-molina, Hector},
    number = {1-2},
    month = {9},
    pages = {566--577},
    volume = {3},
    url = {http://ilpubs.stanford.edu:8090/917/ http://portal.acm.org/citation.cfm?id=1920914},
    isbn = {0000000000000},
    doi = {10.14778/1920841.1920914},
    issn = {21508097}
}

@misc{parameswaran_towards_2010,
    title = {{Towards the Web of Concepts: Extracting Concepts from Large Datasets}},
    shorttitle = {Towards the Web of Concepts},
    year = {2010},
    booktitle = {Proceedings of the VLDB Endowment},
    author = {Parameswaran, Aditya and Garcia-molina, Hector and Rajaraman, Anand},
    month = {9},
    isbn = {0000000000000},
    doi = {10.14778/1920841.1920914},
    issn = {21508097}
}

@misc{parameswaran_towards_2010b,
    title = {{Towards the Web of Concepts: Extracting Concepts from Large Datasets}},
    shorttitle = {Towards the Web of Concepts},
    year = {2010},
    author = {Parameswaran, Aditya and Garcia-Molina, Hector and Rajaraman, Anand},
    month = {9},
    url = {http://ilpubs.stanford.edu:8090/917/}
}

@inproceedings{Bayramolu2017,
    title = {{Towards Virtual H{\&}E Staining of Hyperspectral Lung Histology Images Using Conditional Generative Adversarial Networks}},
    year = {2017},
    booktitle = {International Conference on Computer Vision},
    author = {Bayramolu, Neslihan and Kaakinen, Mika and Eklund, Lauri},
    url = {http://openaccess.thecvf.com/content_ICCV_2017_workshops/papers/w1/Bayramoglu_Towards_Virtual_HE_ICCV_2017_paper.pdf}
}

@article{Paik2018,
    title = {{Tracing diagnosis trajectories over millions of inpatients reveal an unexpected association between schizophrenia and rhabdomyolysis}},
    year = {2018},
    journal = {bioRxiv},
    author = {Paik, Hyojung and Kan, Matthew J and Rappoport, Nadav and Hadley, Dexter and Sirota, Marina and Chen, Bin and Manber, Udi and Cho, Seong Beom and Butte, Atul J},
    month = {11},
    publisher = {Cold Spring Harbor Laboratory},
    url = {https://www.biorxiv.org/content/early/2018/11/19/473082},
    doi = {10.1101/473082}
}

@article{Odlyzko1995,
    title = {{Tragic loss or good riddance? The impending demise of traditional scholarly journals}},
    shorttitle = {Tragic loss or good riddance?},
    year = {1995},
    journal = {International Journal of Human - Computer Studies},
    author = {Odlyzko, Andrew M.},
    number = {1},
    pages = {71--122},
    volume = {42},
    url = {http://www.sciencedirect.com/science/article/pii/S107158198571004X http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.48.1085&rep=rep1&type=pdf},
    doi = {10.1006/ijhc.1995.1004},
    issn = {10959300}
}

@article{zhu2016trained,
    title = {{Trained ternary quantization}},
    year = {2016},
    journal = {arXiv preprint arXiv:1612.01064},
    author = {Zhu, Chenzhuo and Han, Song and Mao, Huizi and Dally, William J}
}

@article{Uzunova,
    title = {{Training CNNs for Image Registration from Few Samples with Model-based Data Augmentation}},
    author = {Uzunova, Hristina and Wilms, Matthias and Handels, Heinz and Ehrhardt, Jan},
    url = {https://link.springer.com/content/pdf/10.1007%2F978-3-319-66182-7_26.pdf},
    doi = {10.1007/978-3-319-66182-7}
}

@inproceedings{Vinogradova2002,
    title = {{Training of a crater detection algorithm for Mars crater imagery}},
    year = {2002},
    author = {Vinogradova, T. and Burl, M. and Mjolsness, E.},
    month = {3},
    url = {http://hdl.handle.net/2014/13382}
}

@article{Hinton2002,
    title = {{Training products of experts by minimizing contrastive divergence}},
    year = {2002},
    journal = {Neural computation},
    author = {Hinton, Geoffrey E.},
    number = {8},
    pages = {1771–1800},
    volume = {14},
    url = {http://www.mitpressjournals.org/doi/abs/10.1162/089976602760128018 http://www.cs.utoronto.ca/~hinton/absps/nccd.pdf}
}

@article{Hagos2019,
    title = {{Transfer Learning based Detection of Diabetic Retinopathy from Small Dataset}},
    year = {2019},
    author = {Hagos, Misgina Tsighe and Kant, Shri},
    month = {5},
    url = {http://arxiv.org/abs/1905.07203},
    arxivId = {1905.07203}
}

@article{Lee2017graphs,
    title = {{Transfer Learning for Deep Learning on Graph-Structured Data}},
    year = {2017},
    journal = {Proceedings of the 31th Conference on Artificial Intelligence (AAAI 2017)},
    author = {Lee, Jaekoo and Kim, Hyunjae and Lee, Jongsun and Yoon, Sungroh},
    pages = {2154--2160},
    arxivId = {arXiv:1611.04687v1},
    keywords = {Machine Learning Methods}
}

@article{Raghu2019,
    title = {{Transfusion: Understanding Transfer Learning for Medical Imaging}},
    year = {2019},
    author = {Raghu, Maithra and Zhang, Chiyuan and Kleinberg, Jon and Bengio, Samy},
    month = {2},
    url = {http://arxiv.org/abs/1902.07208},
    arxivId = {1902.07208}
}

@techreport{Valiente2002,
    title = {{Tree edit distance and common subtrees}},
    year = {2002},
    author = {Valiente, G.},
    institution = {Research Report LSI-02-20-R, Universitat Politecnica de Catalunya, Barcelona, Spain}
}

@techreport{Valiente2002b,
    title = {{Tree edit distance and common subtrees}},
    year = {2002},
    author = {Valiente, G.},
    institution = {Research Report LSI-02-20-R, Universitat Politecnica de Catalunya, Barcelona, Spain}
}

@article{han2017trrust,
    title = {{TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions}},
    year = {2017},
    journal = {Nucleic acids research},
    author = {Han, Heonjong and Cho, Jae-Won and Lee, Sangyoung and Yun, Ayoung and Kim, Hyojin and Bae, Dasom and Yang, Sunmo and Kim, Chan Yeong and Lee, Muyoung and Kim, Eunbeen and {others}},
    number = {D1},
    pages = {D380--D386},
    volume = {46},
    publisher = {Oxford University Press}
}

@article{francis2018true,
    title = {{True Gen’: Generation Z and its implications for companies}},
    year = {2018},
    journal = {McKinsey {\&} Company},
    author = {Francis, Tracy and Hoefel, F}
}

@misc{2014NymiBand,
    title = {{Nymi Band}},
    year = {2014},
    url = {https://www.nymi.com/}
}

@article{Security-OrientedTechniques,
    title = {{Security-Oriented Formal Techniques}}
}
@article{Das2020,
    title = {{Truncated inception net: COVID-19 outbreak screening using chest X-rays}},
    year = {2020},
    journal = {Physical and Engineering Sciences in Medicine},
    author = {Das, Dipayan and Santosh, K. C. and Pal, Umapada},
    number = {3},
    month = {9},
    pages = {915--925},
    volume = {43},
    publisher = {Springer},
    url = {https://doi.org/10.1007/s13246-020-00888-x},
    doi = {10.1007/s13246-020-00888-x},
    issn = {26624737},
    pmid = {32588200},
    keywords = {CNN, COVID-19, Chest X-rays, Deep learning, Inception net, Pneumonia, Tuberculosis}
}

@techreport{Hou,
    title = {{Tube Convolutional Neural Network (T-CNN) for Action Detection in Videos}},
    author = {Hou, Rui and Chen, Chen and Shah, Mubarak},
    url = {https://arxiv.org/pdf/1703.10664.pdf},
    arxivId = {1703.10664v3}
}

@article{Codina2008,
    title = {{Typical levels of airborne fungal spores in houses without obvious moisture problems during a rainy season in Florida, USA}},
    year = {2008},
    journal = {Journal of Investigational},
    author = {Codina, R and Fox, RW and Lockey, RF and DeMarco, P},
    url = {http://www.jiaci.org/issues/vol18issue3/2.pdf}
}

@article{Abebe,
    title = {{U Mechanism Design for Social Good}},
    author = {Abebe, Rediet and Goldner, Kira},
    number = {3},
    pages = {2018},
    volume = {4},
    url = {https://arxiv.org/pdf/1810.09832.pdf?fbclid=IwAR1vqqpa4fiY5f9Q2xX1YNJ8cvBq9WwZA8pzgAvvv35bU0gfI5hN-EVOVak},
    doi = {10.1145/3284751.3284761},
    arxivId = {1810.09832v1}
}

@inproceedings{Ronneberger2015unet,
    title = {{U-Net: Convolutional Networks for Biomedical Image Segmentation}},
    year = {2015},
    booktitle = {Medical Image Computing and Computer Assisted Intervention},
    author = {Ronneberger, Olaf and Fischer, Philipp and Brox, Thomas},
    month = {5},
    url = {https://arxiv.org/abs/1505.04597},
    arxivId = {1505.04597}
}

@misc{OGrady2020,
    title = {{U.S. COVID-19 death toll surpasses 2,000 in one day and 100,000 total worldwide}},
    year = {2020},
    booktitle = {The Washington Post},
    author = {O'Grady, Siobhán and Noack, Rick and Mettler, Katie and Knowles, Hannah and Armus, Teo and Wagner, John and And, Brittany Shammas and Berger, Miriam},
    url = {https://www.washingtonpost.com/world/2020/04/09/coronavirus-latest-news/}
}

@inproceedings{Kokkinos2017,
    title = {{UberNet: Training a Universal Convolutional Neural Network for Low-, Mid-, and High-Level Vision Using Diverse Datasets and Limited Memory}},
    year = {2017},
    booktitle = {2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR)},
    author = {Kokkinos, Iasonas},
    month = {7},
    pages = {5454--5463},
    publisher = {IEEE},
    url = {http://ieeexplore.ieee.org/document/8100062/},
    isbn = {978-1-5386-0457-1},
    doi = {10.1109/CVPR.2017.579}
}

@article{McInnes2018UMAP,
    title = {{UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction}},
    year = {2018},
    journal = {arXiv preprint arXiv:1802.03426},
    author = {McInnes, Leland and Healy, John and Melville, James},
    month = {2},
    url = {http://arxiv.org/abs/1802.03426},
    arxivId = {1802.03426}
}

@inproceedings{Trofimov2017,
    title = {{Uncovering the gene usage of human tissue cells with joint factorized embeddings}},
    year = {2017},
    booktitle = {International Conference on Machine Learning (ICML) Workshop on Computational Biology (WCB)},
    author = {Trofimov, Assya and Cohen, Joseph Paul and Perreault, Claude and Bengio, Yoshua and Lemieux, Sebastien}
}

@inproceedings{AssyaTrofimovJosephPaulCohenClaudePerreaultYoshuaBengio2017,
    title = {{Uncovering the gene usage of human tissue cells with joint factorized embeddings}},
    year = {2017},
    booktitle = {International Conference on Machine Learning (ICML) Workshop on Computational Biology (WCB)},
    author = {Assya Trofimov, Joseph Paul Cohen, Claude Perreault, Yoshua Bengio, Sebastien Lemieux}
}

@inproceedings{Fisher1997,
    title = {{Undergraduate Women in Computer Science: Experience, Motivation and Culture}},
    shorttitle = {Undergraduate Women in Computer Science},
    year = {1997},
    author = {Fisher, Allan and Margolis, Jane and Miller, Faye},
    pages = {106–110},
    series = {SIGCSE '97},
    publisher = {ACM},
    url = {http://doi.acm.org/10.1145/268084.268127 http://dl.acm.org/ft_gateway.cfm?id=268127&type=pdf},
    address = {New York, NY, USA},
    isbn = {0-89791-889-4},
    doi = {10.1145/268084.268127}
}

@article{Berthelot2018,
    title = {{Understanding and Improving Interpolation in Autoencoders via an Adversarial Regularizer}},
    year = {2018},
    author = {Berthelot, David and Raffel, Colin and Roy, Aurko and Goodfellow, Ian},
    month = {7},
    url = {http://arxiv.org/abs/1807.07543},
    arxivId = {1807.07543}
}

@inproceedings{macleod2017understanding,
    title = {{Understanding Blind People's Experiences with Computer-Generated Captions of Social Media Images}},
    year = {2017},
    booktitle = {Proceedings of the 2017 CHI Conference on Human Factors in Computing Systems},
    author = {MacLeod, Haley and Bennett, Cynthia L and Morris, Meredith Ringel and Cutrell, Edward},
    pages = {5988--5999},
    organization = {ACM}
}

@article{Alain2016,
    title = {{Understanding intermediate layers using linear classifier probes}},
    year = {2016},
    journal = {International Conference on Learning Representations},
    author = {Alain, Guillaume and Bengio, Yoshua},
    url = {https://www.semanticscholar.org/paper/Understanding-intermediate-layers-using-linear-Alain-Bengio/2df19be140f3d2cbb07fa890d25501a8ecf93c7b}
}

@article{Glorot2010,
    title = {{Understanding the difficulty of training deep feedforward neural networks}},
    year = {2010},
    journal = {International Conference on Artificial Intelligence and Statistics (AISTATS)},
    author = {Glorot, Xavier and Bengio, Yoshua},
    url = {http://machinelearning.wustl.edu/mlpapers/paper_files/AISTATS2010_GlorotB10.pdf},
    doi = {10.1.1.207.2059},
    issn = {15324435}
}

@article{beckham2017unimodal,
    title = {{Unimodal probability distributions for deep ordinal classification}},
    year = {2017},
    journal = {International Conference on Machine Learning},
    author = {Beckham, Christopher and Pal, Christopher},
    url = {http://arxiv.org/abs/1705.05278},
    arxivId = {1705.05278}
}

@inproceedings{Zhu2017cyclegan,
    title = {{Unpaired Image-to-Image Translation Using Cycle-Consistent Adversarial Networks}},
    year = {2017},
    booktitle = {International Conference on Computer Vision},
    author = {Zhu, Jun Yan and Park, Taesung and Isola, Phillip and Efros, Alexei A.},
    volume = {2017-Octob},
    url = {https://arxiv.org/pdf/1703.10593.pdf},
    isbn = {9781538610329},
    doi = {10.1109/ICCV.2017.244},
    issn = {15505499},
    arxivId = {1703.10593}
}

@inproceedings{ZhuCycleGAN2017,
    title = {{Unpaired Image-to-Image Translation using Cycle-Consistent Adversarial Networks}},
    year = {2017},
    booktitle = {International Conference on Computer Vision},
    author = {Zhu, Jun-Yan and Park, Taesung and Isola, Phillip and Efros, Alexei A.},
    month = {3},
    url = {http://arxiv.org/abs/1703.10593},
    arxivId = {1703.10593}
}

@article{Karypis1995,
    title = {{Unstructured Graph Partitioning and Sparse Matrix Ordering System}},
    year = {1995},
    journal = {Unstructured Graph Partinioning and Sparse Matrix Ordering},
    author = {Karypis, George and Kumar, Vipin},
    url = {http://dm.kaist.ac.kr/kse625/resources/metis.pdf}
}

@inproceedings{Schlegl2017,
    title = {{Unsupervised anomaly detection with generative adversarial networks to guide marker discovery}},
    year = {2017},
    booktitle = {International Conference on Information Processing in Medical Imaging},
    author = {Schlegl, Thomas and Seeb{\"{o}}ck, Philipp and Waldstein, Sebastian M. and Schmidt-Erfurth, Ursula and Langs, Georg},
    url = {http://arxiv.org/abs/1703.05921},
    isbn = {9783319590493},
    doi = {10.1007/978-3-319-59050-9{\_}12},
    issn = {16113349},
    pmid = {26221676},
    arxivId = {1703.05921}
}

@article{Schlegl2017GAN-ReconOOD,
    title = {{Unsupervised Anomaly Detection with Generative Adversarial Networks to Guide Marker Discovery}},
    year = {2017},
    author = {Schlegl, Thomas and Seeb{\"{o}}ck, Philipp and Waldstein, Sebastian M. and Schmidt-Erfurth, Ursula and Langs, Georg},
    month = {3},
    url = {http://arxiv.org/abs/1703.05921},
    arxivId = {1703.05921}
}

@article{Romero2016,
    title = {{Unsupervised Deep Feature Extraction for Remote Sensing Image Classification}},
    year = {2015},
    journal = {IEEE Transactions on Geoscience and Remote Sensing},
    author = {Romero, Adriana and Gatta, Carlo and Camps-Valls, Gustau},
    number = {3},
    month = {3},
    pages = {1--14},
    volume = {54},
    publisher = {IEEE},
    url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=7293195 http://arxiv.org/abs/1511.08131\nhttp://www.arxiv.org/pdf/1511.08131.pdf},
    doi = {10.1109/TGRS.2015.2478379},
    issn = {0196-2892, 1558-0644},
    arxivId = {1511.08131},
    keywords = {Aerial image classification, Computer architecture, Feature extraction, Remote sensing, Sociology, Statistics, Training, Unsupervised learning, aerial scene classification, classification, deep convolutional network, deep convolutional networks, deep learning, feature extraction, geophysical image processing, hyperspectral (HS) image, hyperspectral imagery, hyperspectral images, hyperspectral imaging, image classification, kernel principal component analysis, land cover, land cover classification, land use, land use classification, multiimagery, multiimages, multispectral (MS) images, principal component analysis, remote sensing, remote sensing data analysis, remote sensing image classification, segmentation, single-layer network, sparse feature, sparse features learning, sparse representation, supervised convolutional network, unsupervised deep feature extraction, unsupervised learning, very high resolution (VHR)}
}

@inproceedings{Ganin2015,
    title = {{Unsupervised Domain Adaptation by Backpropagation}},
    year = {2015},
    booktitle = {Proceedings of the International Conference on Machine learning (ICML)},
    author = {Ganin, Yaroslav and Lempitsky, Victor},
    month = {9},
    url = {http://jmlr.org/proceedings/papers/v37/ganin15.html http://arxiv.org/abs/1409.7495 http://www.shortscience.org/paper?bibtexKey=journals/corr/1409.7495},
    isbn = {9781510810587},
    arxivId = {1409.7495v2}
}

@inproceedings{Ganin2014,
    title = {{Unsupervised Domain Adaptation by Backpropagation}},
    year = {2014},
    booktitle = {International Conference on Machine Learning},
    author = {Ganin, Yaroslav and Lempitsky, Victor},
    month = {9},
    url = {http://arxiv.org/abs/1409.7495},
    arxivId = {1409.7495}
}

@inproceedings{Kamnitsas2016,
    title = {{Unsupervised domain adaptation in brain lesion segmentation with adversarial networks}},
    year = {2016},
    booktitle = {International Conference on Information Processing in Medical Imaging},
    author = {Kamnitsas, Konstantinos and Baumgartner, Christian and Ledig, Christian and Newcombe, Virginia F. J. and Simpson, Joanna P. and Kane, Andrew D. and Menon, David K. and Nori, Aditya and Criminisi, Antonio and Rueckert, Daniel and Glocker, Ben},
    month = {12},
    url = {http://arxiv.org/abs/1612.08894},
    arxivId = {1612.08894}
}

@article{Tan,
    title = {{UNSUPERVISED FEATURE CONSTRUCTION AND KNOWLEDGE EXTRACTION FROM GENOME-WIDE ASSAYS OF BREAST CANCER WITH DENOISING AUTOENCODERS}},
    author = {Tan, Jie and Ung, Matthew and Cheng, Chao and Greene, Casey S},
    url = {http://psb.stanford.edu/psb-online/proceedings/psb15/tan.pdf},
    keywords = {Breast Cancer, Denoising Autoencoders, Feature Construction, Functional Genomics}
}

@article{Hou2017,
    title = {{Unsupervised Histopathology Image Synthesis}},
    year = {2017},
    author = {Hou, Le and Agarwal, Ayush and Samaras, Dimitris and Kurc, Tahsin M. and Gupta, Rajarsi R. and Saltz, Joel H.},
    month = {12},
    url = {http://arxiv.org/abs/1712.05021},
    arxivId = {1712.05021}
}

@inproceedings{Kanezaki2018,
    title = {{Unsupervised image segmentation by backpropagation}},
    year = {2018},
    booktitle = {ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings},
    author = {Kanezaki, Asako},
    pages = {1543--1547},
    volume = {2018-April},
    url = {https://kanezaki.github.io/pytorch-unsupervised-segmentation/ICASSP2018_kanezaki.pdf},
    isbn = {9781538646588},
    doi = {10.1109/ICASSP.2018.8462533},
    issn = {15206149},
    keywords = {Convolutional neural networks, Feature clustering, Unsupervised learning}
}

@article{Wang2017b,
    title = {{Unsupervised image segmentation using convolutional autoencoder with total variation regularization as preprocessing}},
    year = {2017},
    journal = {2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},
    author = {Wang, Chunlai and Yang, Bin and Liao, Yiwen},
    number = {c},
    month = {3},
    pages = {1877--1881},
    publisher = {IEEE},
    url = {http://ieeexplore.ieee.org/document/7952482/},
    isbn = {9781509041176},
    doi = {10.1109/ICASSP.2017.7952482}
}

@misc{Liu2017,
    title = {{Unsupervised Image-to-Image Translation Networks}},
    year = {2017},
    booktitle = {Neural Information Processing Systems},
    author = {Liu, Ming-Yu and Breuel, Thomas and Kautz, Jan},
    url = {http://arxiv.org/abs/1703.00848},
    issn = {1703.00848},
    arxivId = {1703.00848}
}

@article{Hofmann2001,
    title = {{Unsupervised learning by probabilistic latent semantic analysis}},
    year = {2001},
    journal = {Machine learning},
    author = {Hofmann, Thomas},
    number = {1-2},
    pages = {177–196},
    volume = {42},
    url = {http://link.springer.com/article/10.1023/A:1007617005950 http://www.kmklaw.com/assets/attachments/Unsupervised Learning by Probabilistic Latent Semantic Analysis.pdf}
}

@article{Hu2017,
    title = {{Unsupervised Learning for Cell-level Visual Representation in Histopathology Images with Generative Adversarial Networks}},
    year = {2017},
    journal = {arXiv:1711.11317},
    author = {Hu, Bo and Tang, Ye and Chang, Eric I-Chao and Fan, Yubo and Lai, Maode and Xu, Yan},
    month = {11},
    url = {http://arxiv.org/abs/1711.11317},
    arxivId = {1711.11317}
}

@article{Gitter2016,
    title = {{Unsupervised learning of transcriptional regulatory networks via latent tree graphical models}},
    year = {2016},
    journal = {arXiv e-prints},
    author = {Gitter, Anthony and Huang, Furong and Valluvan, Ragupathyraj and Fraenkel, Ernest and Anandkumar, Animashree},
    url = {http://arxiv.org/abs/1609.06335},
    arxivId = {1609.06335}
}

@article{Hsu2018,
    title = {{Unsupervised Learning via Meta-Learning}},
    year = {2018},
    author = {Hsu, Kyle and Levine, Sergey and Finn, Chelsea},
    month = {10},
    url = {http://arxiv.org/abs/1810.02334},
    arxivId = {1810.02334}
}

@article{Aganj,
    title = {{Unsupervised Medical Image Segmentation Based on the Local Center of Mass}},
    author = {Aganj, Iman and Harisinghani, Mukesh G and Weissleder, Ralph and Fischl, Bruce},
    url = {www.nature.com/scientificreports/},
    doi = {10.1038/s41598-018-31333-5}
}

@article{Bousmalis2016,
    title = {{Unsupervised Pixel–Level Domain Adaptation with Generative Adversarial Networks}},
    year = {2016},
    author = {Bousmalis, Konstantinos and Silberman, Nathan and Dohan, David and Erhan, Dumitru and Krishnan, Dilip},
    month = {12},
    url = {http://arxiv.org/abs/1612.05424 https://arxiv.org/pdf/1612.05424.pdf},
    arxivId = {arXiv:1612.05424v1}
}

@article{Mahmood2017,
    title = {{Unsupervised Reverse Domain Adaptation for Synthetic Medical Images via Adversarial Training}},
    year = {2017},
    author = {Mahmood, Faisal and Chen, Richard and Durr, Nicholas J.},
    month = {11},
    url = {http://arxiv.org/abs/1711.06606},
    arxivId = {1711.06606}
}

@techreport{Doersch,
    title = {{Unsupervised Visual Representation Learning by Context Prediction}},
    author = {Doersch, Carl and Gupta, Abhinav and Efros, Alexei A},
    url = {https://www.cv-foundation.org/openaccess/content_iccv_2015/papers/Doersch_Unsupervised_Visual_Representation_ICCV_2015_paper.pdf}
}

@article{Tartaglione2020Unveiling,
    title = {{Unveiling COVID-19 from Chest X-ray with deep learning: a hurdles race with small data}},
    year = {2020},
    author = {Tartaglione, Enzo and Barbano, Carlo Alberto and Berzovini, Claudio and Calandri, Marco and Grangetto, Marco},
    month = {4},
    url = {http://arxiv.org/abs/2004.05405},
    arxivId = {2004.05405}
}

@inproceedings{Wei2004,
    title = {{Urban building extraction from high-resolution satellite panchromatic image using clustering and edge detection}},
    year = {2004},
    author = {Wei, Yanfeng and Zhao, Zhongming and Song, Jianghong},
    pages = {2008–2010},
    volume = {3},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1370742 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=1370742&abstractAccess=no&userType=inst}
}

@article{Sirmacek2009a,
    title = {{Urban-area and building detection using SIFT keypoints and graph theory}},
    year = {2009},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Sirmacek, Beril and Unsalan, Cem},
    number = {4},
    pages = {1156--1167},
    volume = {47},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4799121 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4799121&abstractAccess=no&userType=inst http://www.iro.umontreal.ca/~mignotte/IFT6150/Articles/graphbuilding.pdf}
}

@article{Sirmaccek2009,
    title = {{Urban-area and building detection using SIFT keypoints and graph theory}},
    year = {2009},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Sirma{\textbackslash}ccek, Beril and Unsalan, Cem},
    number = {4},
    pages = {1156–1167},
    volume = {47},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4799121 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4799121&abstractAccess=no&userType=inst http://www.iro.umontreal.ca/~mignotte/IFT6150/Articles/graphbuilding.pdf}
}

@article{Sirmacek2009ab,
    title = {{Urban-area and building detection using SIFT keypoints and graph theory}},
    year = {2009},
    journal = {Geoscience and Remote Sensing, IEEE Transactions on},
    author = {Sirma{\textbackslash}ccek, Beril and Unsalan, Cem and Sirmacek, Beril and Unsalan, Cem},
    number = {4},
    volume = {47},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4799121 http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4799121&abstractAccess=no&userType=inst http://www.iro.umontreal.ca/~mignotte/IFT6150/Articles/graphbuilding.pdf}
}

@inproceedings{Pusara2004,
    title = {{User re-authentication via mouse movements}},
    year = {2004},
    author = {Pusara, M. and Brodley, C. E},
    pages = {1–8},
    url = {http://dl.acm.org/citation.cfm?id=1029210 http://www.csis.pace.edu/~ctappert/it691-06/projects/mouse-pusara.pdf}
}

@article{Tuia2011,
    title = {{Using active learning to adapt remote sensing image classifiers}},
    year = {2011},
    journal = {Remote Sensing of Environment},
    author = {Tuia, D. and Pasolli, E. and Emery, W. J.},
    number = {9},
    pages = {2232–2242},
    volume = {115},
    url = {http://www.sciencedirect.com/science/article/pii/S0034425711001507 http://wiki.epfl.ch/eo-adapt/documents/papers/alshiftpreprint.pdf}
}

@article{Qin2019,
    title = {{Using artificial intelligence to read chest radiographs for tuberculosis detection: A multi-site evaluation of the diagnostic accuracy of three deep learning systems}},
    year = {2019},
    journal = {Scientific Reports},
    author = {Qin, Zhi Zhen and Sander, Melissa S. and Rai, Bishwa and Titahong, Collins N. and Sudrungrot, Santat and Laah, Sylvain N. and Adhikari, Lal Mani and Carter, E. Jane and Puri, Lekha and Codlin, Andrew J. and Creswell, Jacob},
    number = {1},
    month = {12},
    pages = {15000},
    volume = {9},
    url = {http://www.nature.com/articles/s41598-019-51503-3},
    doi = {10.1038/s41598-019-51503-3},
    issn = {2045-2322}
}

@misc{Schorn2009,
    title = {{Using CDT APIs to programmatically introspect C/C++ code}},
    year = {2009},
    author = {Schorn, Markus},
    url = {http://wiki.eclipse.org/images/c/c7/CDT_APIs_for_code_introspection.pdf}
}

@article{Fakoor2010,
    title = {{Using deep learning to enhance cancer diagnosis and classification}},
    year = {2013},
    journal = {International Conference on Machine Learning},
    author = {Fakoor, Rasool and Ladhak, Faisal and Nazi, Azade and Huber, Manfred}
}

@article{Ma2018a,
    title = {{Using deep learning to model the hierarchical structure and function of a cell}},
    year = {2018},
    journal = {Nature Methods},
    author = {Ma, Jianzhu and Yu, Michael Ku and Fong, Samson and Ono, Keiichiro and Sage, Eric and Demchak, Barry and Sharan, Roded and Ideker, Trey},
    number = {4},
    month = {3},
    pages = {290--298},
    volume = {15},
    publisher = {Nature Publishing Group},
    url = {http://www.nature.com/doifinder/10.1038/nmeth.4627},
    doi = {10.1038/nmeth.4627},
    issn = {15487105},
    pmid = {29505029},
    keywords = {Cell growth, Computational models, Genetic interaction}
}

@article{Hong2001,
    title = {{Using grammatical inference to automate information extraction from the Web}},
    year = {2001},
    journal = {Principles of Data Mining and Knowledge Discovery},
    author = {Hong, T. and Clark, K.},
    pages = {216–227}
}

@article{hong_using_2001,
    title = {{Using grammatical inference to automate information extraction from the Web}},
    year = {2001},
    journal = {Principles of Data Mining and Knowledge Discovery},
    author = {Hong, T and Clark, K}
}

@inproceedings{Russell2006,
    title = {{Using multiple segmentations to discover objects and their extent in image collections}},
    year = {2006},
    author = {Russell, Bryan C. and Freeman, William T. and Efros, Alexei A. and Sivic, Josef and Zisserman, Andrew},
    pages = {1605–1614},
    volume = {2},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=1640948 http://eprints.pascal-network.org/archive/00002118/01/russell06.pdf http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=1640948&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnu}
}

@article{Lin2017a,
    title = {{Using neural networks for reducing the dimensions of single-cell RNA-Seq data}},
    year = {2017},
    journal = {Nucleic Acids Research},
    author = {Lin, Chieh and Jain, Siddhartha and Kim, Hannah and Bar-Joseph, Ziv},
    number = {17},
    month = {9},
    pages = {e156-e156},
    volume = {45},
    publisher = {Oxford University Press},
    url = {http://academic.oup.com/nar/article/45/17/e156/4056711},
    doi = {10.1093/nar/gkx681},
    issn = {0305-1048},
    keywords = {architecture, genes, heterogeneity, proton pump inhibitors, rna}
}

@article{Dasgupta2004,
    title = {{Using RNAi to catch Drosophilagenes in a web of interactions: insights into cancer research.}},
    year = {2004},
    journal = {Oncogene},
    author = {Dasgupta, R and Perrimon, N},
    volume = {23},
    url = {http://dx.doi.org/10.1038/sj.onc.1208028},
    doi = {10.1038/sj.onc.1208028}
}

@inproceedings{Schutte2020StyleGanMed,
    title = {{Using StyleGAN for Visual Interpretability of Deep Learning Models on Medical Images}},
    year = {2020},
    booktitle = {Medical Imaging meets NeurIPS},
    author = {Schutte, Kathryn and Moindrot, Olivier and H{\'{e}}rent, Paul and Schiratti, Jean-Baptiste and J{\'{e}}gou, Simon},
    url = {https://arxiv.org/abs/2101.07563}
}

@inproceedings{Ramachandran2018,
    title = {{Using YOLO based deep learning network for real time detection and localization of lung nodules from low dose CT scans}},
    year = {2018},
    booktitle = {Medical Imaging 2018: Computer-Aided Diagnosis},
    author = {Ramachandran, Sindhu and George, Jose and Skaria, Shibon and V.V., Varun},
    editor = {Mori, Kensaku and Petrick, Nicholas},
    month = {2},
    pages = {53},
    volume = {10575},
    publisher = {SPIE},
    url = {https://www.spiedigitallibrary.org/conference-proceedings-of-spie/10575/2293699/Using-YOLO-based-deep-learning-network-for-real-time-detection/10.1117/12.2293699.full},
    isbn = {9781510616394},
    doi = {10.1117/12.2293699},
    keywords = {CAD system, CT, Caffe, Convolutional Neural Networks, Deep Learning, Lung Nodule Detection}
}

@article{Zech2018,
    title = {{Variable generalization performance of a deep learning model to detect pneumonia in chest radiographs: A cross-sectional study}},
    year = {2018},
    journal = {PLoS Medicine},
    author = {Zech, John R. and Badgeley, Marcus A. and Liu, Manway and Costa, Anthony B. and Titano, Joseph J. and Oermann, Eric Karl},
    number = {11},
    month = {7},
    volume = {15},
    url = {https://arxiv.org/abs/1807.00431},
    doi = {10.1371/journal.pmed.1002683},
    issn = {15491676},
    arxivId = {1807.00431}
}

@article{Pooler2013,
    title = {{Variation in Diagnostic Performance among radiologists at screening CT colonography 1}},
    year = {2013},
    journal = {Radiology},
    author = {Pooler, B Dustin and Kim, David H and Hassan, Cesare and Rinaldi, Antonio and Burnside, Elizabeth S and Pickhardt, Perry J and Unit, Digestive Endoscopy and Regina, Nuovo and Hospital, Margherita},
    volume = {268},
    doi = {10.1148/radiol.13121246}
}

@inproceedings{Shankar1993a,
    title = {{Verification of real-time systems using PVS}},
    year = {1993},
    author = {Shankar, N.},
    pages = {280–291},
    url = {http://www.springerlink.com/content/f2517t5351781317/}
}

@article{Simonyan2015,
    title = {{Very deep convolutional networks for large-scale image recognition}},
    year = {2015},
    journal = {International Conference on Learning Representations},
    author = {Simonyan, Karen and Zisserman, Andrew},
    pages = {1--14},
    url = {http://arxiv.org/abs/1409.1556 http://arxiv.org/pdf/1409.1556},
    isbn = {9781450341448},
    doi = {10.1016/j.infsof.2008.09.005},
    issn = {09505849},
    pmid = {16873662},
    arxivId = {1409.1556}
}

@article{Paul1993,
    title = {{Viability testing and characterization of germination of fungal spores by automatic image analysis}},
    year = {1993},
    journal = {Biotechnology and Bioengineering},
    author = {Paul, G. C. and Kent, C. A. and Thomas, C. R.},
    number = {1},
    pages = {11--23},
    volume = {42},
    isbn = {0006-3592 (Print){\textbackslash}r0006-3592 (Linking)},
    doi = {10.1002/bit.260420103},
    issn = {00063592},
    pmid = {18609642},
    keywords = {Penicillium chrysogenum, germination, image analysis, morphology, spore, spore viability}
}

@article{McNeil2008,
    title = {{Vibrational frequencies and tuning of the African mbira}},
    year = {2008},
    journal = {The Journal of the Acoustical Society of America},
    author = {McNeil, L. E. and Mitran, S.},
    pages = {1169},
    volume = {123}
}

@article{Palma2001,
    title = {{Viewpoint: Why Women Avoid Computer Science}},
    shorttitle = {Viewpoint},
    year = {2001},
    journal = {Commun. ACM},
    author = {Palma, Paul De},
    number = {6},
    month = {6},
    pages = {27–30},
    volume = {44},
    url = {http://doi.acm.org/10.1145/376134.376145 http://students.cs.byu.edu/~tallguy/de_palma.pdf},
    doi = {10.1145/376134.376145},
    issn = {0001-0782}
}

@inproceedings{Ben-Cohen2017,
    title = {{Virtual PET Images from CT Data Using Deep Convolutional Networks: Initial Results}},
    year = {2017},
    booktitle = {MICCAI Workshop on Simulation and Synthesis in Medical Imaging},
    author = {Ben-Cohen, Avi and Klang, Eyal and Raskin, Stephen P. and Amitai, Michal Marianne and Greenspan, Hayit},
    month = {7},
    url = {http://arxiv.org/abs/1707.09585 http://dx.doi.org/10.1007/978-3-319-68127-6_6},
    doi = {10.1007/978-3-319-68127-6{\_}6},
    arxivId = {1707.09585}
}

@inproceedings{anderson2018vision,
    title = {{Vision-and-language navigation: Interpreting visually-grounded navigation instructions in real environments}},
    year = {2018},
    booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR)},
    author = {Anderson, Peter and Wu, Qi and Teney, Damien and Bruce, Jake and Johnson, Mark and S{\"{u}}nderhauf, Niko and Reid, Ian and Gould, Stephen and van den Hengel, Anton},
    volume = {2}
}

@inproceedings{Csurka2004,
    title = {{Visual categorization with bags of keypoints}},
    year = {2004},
    author = {Csurka, Gabriella and Dance, Christopher and Fan, Lixin and Willamowski, Jutta and Bray, Cédric},
    pages = {22},
    volume = {1},
    url = {http://217.109.185.161/layout/set/print/content/download/20785/148346/file/2004_010.pdf}
}

@inproceedings{brady2013visual,
    title = {{Visual challenges in the everyday lives of blind people}},
    year = {2013},
    booktitle = {Proceedings of the SIGCHI Conference on Human Factors in Computing Systems},
    author = {Brady, Erin and Morris, Meredith Ringel and Zhong, Yu and White, Samuel and Bigham, Jeffrey P},
    pages = {2117--2126},
    organization = {ACM}
}

@inproceedings{Baumgartner2017,
    title = {{Visual Feature Attribution using Wasserstein GANs}},
    year = {2017},
    booktitle = {arXiv:1711.08998},
    author = {Baumgartner, Christian F. and Koch, Lisa M. and Tezcan, Kerem Can and Ang, Jia Xi and Konukoglu, Ender},
    url = {http://arxiv.org/abs/1711.08998},
    arxivId = {1711.08998}
}

@misc{Baumgartner2018VisualFeatureAttribution,
    title = {{Visual Feature Attribution Using Wasserstein GANs}},
    year = {2018},
    author = {Baumgartner, Christian F. and Koch, Lisa M. and Tezcan, Kerem Can and Ang, Jia Xi and Konukoglu, Ender},
    pages = {8309--8319},
    url = {https://openaccess.thecvf.com/content_cvpr_2018/html/Baumgartner_Visual_Feature_Attribution_CVPR_2018_paper.html}
}

@inproceedings{Baumgartner2001,
    title = {{Visual web information extraction with lixto}},
    year = {2001},
    author = {Baumgartner, R. and Flesca, S. and Gottlob, G.},
    pages = {119–128}
}

@inproceedings{baumgartner_visual_2001,
    title = {{Visual web information extraction with lixto}},
    year = {2001},
    booktitle = {International Conference on Very Large Data Bases},
    author = {Baumgartner, R and Flesca, S and Gottlob, G}
}

@article{Zeiler2013a,
    title = {{Visualizing and Understanding Convolutional Networks}},
    year = {2013},
    author = {Zeiler, Matthew D and Fergus, Rob},
    month = {11},
    url = {http://arxiv.org/abs/1311.2901},
    arxivId = {1311.2901}
}

@inproceedings{Zeiler2014,
    title = {{Visualizing and Understanding Convolutional Networks}},
    year = {2014},
    booktitle = {European Conference on Computer Vision},
    author = {Zeiler, Matthew D and Fergus, Rob},
    month = {11},
    url = {http://arxiv.org/abs/1311.2901},
    arxivId = {1311.2901}
}

@article{vanDerMaaten2008_t-sne,
    title = {{Visualizing Data using t-SNE}},
    year = {2008},
    journal = {Journal of Machine Learning Research},
    author = {van der Maaten, Laurens and Hinton, Geoffrey},
    volume = {9},
    url = {http://www.jmlr.org/papers/v9/vandermaaten08a.html},
    keywords = {dimensionality{\_}reduction tSNE visualization}
}

@techreport{Wang2009,
    title = {{VizzAnalyzer C/C++ Front-End Using Eclipse CDT}},
    year = {2009},
    author = {Wang, Xuan},
    url = {http://en.scientificcommons.org/47719925 http://lnu.diva-portal.org/smash/get/diva2:220298/FULLTEXT01},
    language = {en}
}

@misc{Jones2005,
    title = {{Voronoi-based segmentation of cells on image manifolds.}},
    year = {2005},
    author = {Jones, T R and Carpenter, A E and Golland, P},
    publisher = {Springer-Verlag},
    url = {http://dx.doi.org/10.1007/11569541_54},
    address = {Berlin},
    doi = {10.1007/11569541{\_}54}
}

@inproceedings{Yamaguchi2011,
    title = {{Vulnerability extrapolation: assisted discovery of vulnerabilities using machine learning}},
    shorttitle = {Vulnerability extrapolation},
    year = {2011},
    author = {Yamaguchi, F. and Lindner, F. and Rieck, K.},
    pages = {13–13},
    url = {http://dl.acm.org/citation.cfm?id=2028065}
}

@article{Beucher1994,
    title = {{Watershed, hierarchical segmentation and waterfall algorithm}},
    year = {1994},
    journal = {Mathematical morphology and its applications to image processing},
    author = {Beucher, Serge},
    url = {http://www.springerlink.com/index/10.1007/978-94-011-1040-2_10 http://cmm.ensmp.fr/~beucher/publi/ismm94_beucher.pdf},
    isbn = {9401044538},
    doi = {10.1007/978-94-011-1040-2{\_}10},
    keywords = {hierarchical segmenta-, image analysis, image reconstruction, mathematical morphology, tion, waterfall algorithm, watershed}
}

@misc{ye2020weaklychexpert,
    title = {{Weakly Supervised Lesion Localization With Probabilistic-CAM Pooling}},
    year = {2020},
    author = {Ye, Wenwu and Yao, Jin and Xue, Hui and Li, Yi},
    url = {https://arxiv.org/abs/2005.14480},
    arxivId = {2005.14480}
}

@article{Papandreou,
    title = {{Weakly-and Semi-Supervised Learning of a Deep Convolutional Network for Semantic Image Segmentation}},
    author = {Papandreou, George and Chen, Liang-Chieh and Murphy, Kevin and Yuille Ucla, Alan L},
    url = {https://arxiv.org/pdf/1502.02734.pdf}
}

@inproceedings{Zhai2005,
    title = {{Web data extraction based on partial tree alignment}},
    year = {2005},
    author = {Zhai, Y. and Liu, B.},
    pages = {76--85}
}

@inproceedings{zhai_web_2005,
    title = {{Web data extraction based on partial tree alignment}},
    year = {2005},
    booktitle = {World Wide Web},
    author = {Zhai, Y and Liu, B}
}

@article{flesca_web_2004,
    title = {{Web wrapper induction: a brief survey}},
    shorttitle = {Web wrapper induction},
    year = {2004},
    journal = {AI Communications},
    author = {Flesca, S. and Manco, G. and Masciari, E. and Rende, E. and Tagarelli, A.}
}

@article{Cafarella2009,
    title = {{Web-scale extraction of structured data}},
    year = {2009},
    journal = {ACM SIGMOD Record},
    author = {Cafarella, M. J and Madhavan, J. and Halevy, A.},
    number = {4},
    pages = {55–61},
    volume = {37}
}

@article{cafarella_web-scale_2009,
    title = {{Web-scale extraction of structured data}},
    year = {2009},
    journal = {Special Interest Group on Management of Data},
    author = {Cafarella, M J and Madhavan, J and Halevy, A}
}

@inproceedings{gulhane_web-scale_2011,
    title = {{Web-scale information extraction with vertex}},
    year = {2011},
    booktitle = {International Conference on Data Engineering},
    author = {Gulhane, Pankaj and Madaan, Amit and Mehta, Rupesh and Ramamirtham, Jeyashankher and Rastogi, Rajeev and Satpal, Sandeep and Sengamedu, Srinivasan H and Tengli, Ashwin and Tiwari, Charu},
    month = {4},
    publisher = {IEEE},
    isbn = {978-1-4244-8959-6},
    doi = {10.1109/ICDE.2011.5767842},
    issn = {10844627},
    keywords = {Clustering algorithms, Data mining, Humans, Internet, Monitoring, Noise measurement, Web pages, Web-scale information extraction, information retrieval, structured record extraction, template-based Web pages, vertex wrapper induction system, wrapper inference, {\{}XPath{\}}-based extraction rules},
    language = {English}
}

@inproceedings{Gamboa2007,
    title = {{Webbiometrics: User verification via web interaction}},
    shorttitle = {Webbiometrics},
    year = {2007},
    author = {Gamboa, H. and Fred, A. L. N. and Jain, A. K.},
    pages = {1–6},
    url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4430552}
}

@misc{KlokanTechnologies,
    title = {{WebGL Earth - open source 3D digital globe written in JavaScript}},
    author = {{Klokan Technologies}},
    url = {http://www.webglearth.org/}
}

@article{Dhillon2007,
    title = {{Weighted graph cuts without eigenvectors a multilevel approach}},
    year = {2007},
    journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    author = {Dhillon, Inderjit S. and Guan, Yuqiang and Kulis, Brian},
    url = {http://www.cs.utexas.edu/users/inderjit/public_papers/multilevel_pami.pdf},
    isbn = {0162-8828},
    doi = {10.1109/TPAMI.2007.1115},
    issn = {01628828},
    pmid = {17848776},
    keywords = {Clustering, Data mining, Graph partitioning, K-means, Kernel, Segmentation, Spectral clustering, k-means}
}

@article{Kounaves2010,
    title = {{Wet Chemistry experiments on the 2007 Phoenix Mars Scout Lander mission: Data analysis and results}},
    shorttitle = {Wet Chemistry experiments on the 2007 Phoenix Mars},
    year = {2010},
    journal = {Journal of Geophysical Research: Planets (1991–2012)},
    author = {Kounaves, S. P. and Hecht, M. H. and Kapit, J. and Gospodinova, K. and DeFlores, L. and Quinn, R. C. and Boynton, W. V. and Clark, B. C. and Catling, D. C. and Hredzak, P.},
    number = {E1},
    volume = {115},
    url = {http://onlinelibrary.wiley.com/doi/10.1029/2009JE003424/full http://www.tuftschemistry.org/wp-content/uploads/2013/04/Kounaves-etal-JGR-2010v115-E00E10-WCL_results.pdf}
}

@misc{OGCc,
    title = {{WFS}},
    author = {{OGC}},
    url = {http://www.opengeospatial.org/standards/wfs}
}

@techreport{FDA2017Radiation,
    title = {{What are the Radiation Risks from CT?}},
    year = {2017},
    author = {{FDA}},
    url = {https://www.fda.gov/radiation-emitting-products/medical-x-ray-imaging/what-are-radiation-risks-ct},
    institution = {U.S. Food and Drug Administration}
}

@article{Alain2012,
    title = {{What Regularized Auto-Encoders Learn from the Data Generating Distribution}},
    year = {2012},
    author = {Alain, Guillaume and Bengio, Yoshua},
    month = {11},
    url = {http://arxiv.org/abs/1211.4246},
    arxivId = {1211.4246}
}

@techreport{Hoel,
    title = {{When the map is better than the territory}},
    author = {Hoel, Erik P},
    url = {https://arxiv.org/pdf/1612.09592.pdf}
}

@misc{Cao2020a,
    title = {{Which MOoD Methods work? A Benchmark of Medical Out of Distribution Detection | OpenReview}},
    year = {2020},
    author = {Cao, Tianshi and Hui, David Yu-Tung and Huang, Chinwei and Cohen, Joseph Paul},
    url = {https://openreview.net/forum?id=1ABDN92t49}
}

@article{Kostkova2016,
    title = {{Who Owns the Data? Open Data for Healthcare}},
    year = {2016},
    journal = {Frontiers in Public Health},
    author = {Kostkova, Patty and Brewer, Helen and de Lusignan, Simon and Fottrell, Edward and Goldacre, Ben and Hart, Graham and Koczan, Phil and Knight, Peter and Marsolier, Corinne and McKendry, Rachel A. and Ross, Emma and Sasse, Angela and Sullivan, Ralph and Chaytor, Sarah and Stevenson, Olivia and Velho, Raquel and Tooke, John},
    month = {2},
    pages = {7},
    volume = {4},
    publisher = {Frontiers Media SA},
    url = {http://journal.frontiersin.org/Article/10.3389/fpubh.2016.00007/abstract},
    doi = {10.3389/fpubh.2016.00007},
    issn = {2296-2565},
    keywords = {Data policy, Open Data, Privacy, data ownership, healthcare EPR}
}

@article{Spertus1991,
    title = {{Why are there so few female computer scientists?}},
    year = {1991},
    author = {Spertus, Ellen},
    url = {http://dspace.mit.edu/handle/1721.1/7040 http://dspace.mit.edu/bitstream/handle/1721.1/7040/AITR-1315.pdf}
}

@article{Carter2006,
    title = {{Why Students with an Apparent Aptitude for Computer Science Don'T Choose to Major in Computer Science}},
    year = {2006},
    journal = {SIGCSE Bull.},
    author = {Carter, Lori},
    number = {1},
    month = {3},
    pages = {27–31},
    volume = {38},
    url = {http://doi.acm.org/10.1145/1124706.1121352 http://dl.acm.org/ft_gateway.cfm?id=1121352&type=pdf},
    doi = {10.1145/1124706.1121352},
    issn = {0097-8418}
}

@article{Zhu2013,
    title = {{Wide-field fluorescent microscopy and fluorescent imaging flow cytometry on a cell-phone.}},
    year = {2013},
    journal = {Journal of visualized experiments : JoVE},
    author = {Zhu, Hongying and Ozcan, Aydogan},
    number = {74},
    month = {4},
    pages = {e50451},
    url = {http://www.jove.com/video/50451/wide-field-fluorescent-microscopy-fluorescent-imaging-flow-cytometry},
    isbn = {1940-087x},
    doi = {10.3791/50451},
    issn = {1940-087X},
    pmid = {23603893},
    arxivId = {NIHMS150003},
    keywords = {Cell Phones, Cell Phones: instrumentation, Flow Cytometry, Flow Cytometry: instrumentation, Flow Cytometry: methods, Fluorescence, Fluorescence: instrumentation, Fluorescence: methods, Microscopy}
}

@article{Cohen2013,
    title = {{Wireless Message Dissemination via Selective Relay over Bluetooth (MDSRoB)}},
    year = {2013},
    journal = {arXiv preprint arXiv:1307.7814},
    author = {Cohen, Joseph Paul},
    month = {7},
    url = {http://arxiv.org/abs/1307.7814 http://www.arxiv.org/pdf/1307.7814.pdf}
}

@misc{OGCb,
    title = {{WMS}},
    author = {{OGC}},
    url = {http://www.opengeospatial.org/standards/wms}
}

@article{Othman2006,
    title = {{Women in computer science: no shortage here!}},
    shorttitle = {Women in computer science},
    year = {2006},
    journal = {Communications of the ACM},
    author = {Othman, Mazliza and Latih, Rodziah},
    number = {3},
    pages = {111–114},
    volume = {49},
    url = {http://dl.acm.org/citation.cfm?id=1118185 http://cs.furman.edu/~chealy/fys1107/PAPERS/malaysia women.pdf}
}

@article{DeWelde2007,
    title = {{Women in science, technology, engineering and math (STEM)}},
    year = {2007},
    author = {De Welde, K. and Laursen, S. and Thiry, H.},
    url = {http://digitalcommons.usu.edu/advance/567/}
}

@inproceedings{Polzounov2018,
    title = {{Wordfence: Text detection in natural images with border awareness}},
    year = {2018},
    booktitle = {International Conference on Image Processing},
    author = {Polzounov, Andrei and Ablavatski, Artsiom and Escalera, Sergio and Lu, Shijian and Cai, Jianfei},
    month = {2},
    pages = {1222--1226},
    volume = {2017-Septe},
    publisher = {IEEE Computer Society},
    url = {http://arxiv.org/abs/1705.05483},
    isbn = {9781509021758},
    doi = {10.1109/ICIP.2017.8296476},
    issn = {15224880},
    arxivId = {1705.05483},
    keywords = {CNN, Segmentation, Word detection}
}

@book{Bakan2007,
    title = {{World music : traditions and transformations}},
    year = {2007},
    author = {Bakan, Michael},
    publisher = {McGraw-Hill},
    address = {Boston},
    isbn = {9780072415667}
}

@misc{NASA,
    title = {{World Wind JAVA SDK}},
    author = {{NASA}},
    url = {http://worldwind.arc.nasa.gov/java/}
}

@misc{kushmerick_wrapper_1997,
    title = {{Wrapper induction for information extraction}},
    year = {1997},
    booktitle = {Intl Joint Conference on Artificial Intelligence IJCAI},
    author = {Kushmerick, Nicholas and Weld, Daniel S. and Doorenbos, Robert},
    url = {http://www.isi.edu/info-agents/courses/iiweb/kushmerick-ijcai97.pdf citeseer.ist.psu.edu/kushmerick97wrapper.html},
    isbn = {0591708434},
    doi = {10.1.1.33.2176}
}

@inproceedings{kushmerick_wrapper_1997b,
    title = {{Wrapper induction for information extraction}},
    year = {1997},
    booktitle = {Proc. Int’l Joint Conf. Artificial Intelligence ({\{}IJCAI{\}})},
    author = {Kushmerick, Nicholas and Weld, Daniel S and Doorenbos, Robert},
    pages = {729–737}
}

@article{Kushmerick2000a,
    title = {{Wrapper induction: Efficiency and expressiveness}},
    shorttitle = {Wrapper induction},
    year = {2000},
    journal = {Artificial Intelligence},
    author = {Kushmerick, N.},
    number = {1-2},
    pages = {15–68},
    volume = {118},
    url = {http://www.sciencedirect.com/science/article/pii/S0004370299001009}
}

@article{kushmerick_wrapper_2000,
    title = {{Wrapper induction: Efficiency and expressiveness}},
    shorttitle = {Wrapper induction},
    year = {2000},
    journal = {Artificial Intelligence},
    author = {Kushmerick, N}
}

@article{Lerman2003,
    title = {{Wrapper Maintenance: A Machine Learning Approach}},
    year = {2003},
    journal = {Journal of Artificial Intelligence Research},
    author = {Lerman, Kristina and Minton, Steven N and Knoblock, Craig A},
    arxivId = {1106.4872}
}

@article{Kushmerick2000,
    title = {{Wrapper verification}},
    year = {2000},
    journal = {World Wide Web},
    author = {Kushmerick, N.}
}

@article{Kohavi1997,
    title = {{Wrappers for feature subset selection}},
    year = {1997},
    journal = {Artificial intelligence},
    author = {Kohavi, R. and John, G.H.},
    url = {http://www.sciencedirect.com/science/article/pii/S000437029700043X}
}

@article{Han2001,
    title = {{Wrapping web data into XML}},
    year = {2001},
    journal = {ACM SIGMOD Record},
    author = {Han, W. and Buttler, D. and Pu, C.},
    number = {3},
    pages = {33–38},
    volume = {30},
    url = {http://portal.acm.org/citation.cfm?id=603873}
}

@article{han_wrapping_2001,
    title = {{Wrapping web data into {\{}XML{\}}}},
    year = {2001},
    journal = {{\{}ACM{\}} {\{}SIGMOD{\}} Record},
    author = {Han, W and Buttler, D and Pu, C}
}

@misc{_www2012_,
    title = {{www2012}},
    url = {http://www2012.org/}
}

@inproceedings{Erlingsson2006,
    title = {{XFI: Software guards for system address spaces}},
    shorttitle = {XFI},
    year = {2006},
    author = {Erlingsson, Ú. and Abadi, M. and Vrable, M. and Budiu, M. and Necula, G.C.},
    pages = {75–88},
    url = {http://pdos.csail.mit.edu/6.858/2011/readings/xfi.pdf}
}

@misc{Joshi2018xGEMs,
    title = {{xGEMs: Generating Examplars to Explain Black-Box Models}},
    year = {2018},
    author = {Joshi, Shalmali and Koyejo, Oluwasanmi and Kim, Been and Ghosh, Joydeep},
    url = {http://arxiv.org/abs/1806.08867},
    arxivId = {1806.08867}
}

@article{Anton2005,
    title = {{XPath-Wrapper Induction by generalizing tree traversal patterns}},
    year = {2005},
    journal = {Lernen, Wissensentdeckung und Adaptivitt (LWA)},
    author = {Anton, Tobias},
    publisher = {DFKI},
    keywords = {th-wrapper induction by generalizing, tree traversal patterns}
}

@inproceedings{Anton2005b,
    title = {{XPath-Wrapper Induction by generating tree traversal patterns}},
    year = {2005},
    author = {Anton, Tobias},
    month = {10},
    pages = {126--133},
    publisher = {DFKI}
}

@article{Ha2010,
    title = {{XPath-wrapper induction for data extraction}},
    year = {2010},
    author = {Ha, T. Q},
    url = {http://tainguyenso.vnu.edu.vn/jspui/handle/123456789/3402}
}

@inproceedings{Liu2000,
    title = {{XWRAP: An XML-enabled wrapper construction system for web information sources}},
    shorttitle = {XWRAP},
    year = {2000},
    author = {Liu, L. and Pu, C. and Han, W.},
    pages = {611–621},
    url = {http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=839475}
}

@article{Redmon2018,
    title = {{YOLOv3: An Incremental Improvement}},
    year = {2018},
    author = {Redmon, Joseph and Farhadi, Ali},
    url = {https://pjreddie.com/yolo/. http://arxiv.org/abs/1804.02767},
    arxivId = {1804.02767}
}

@inproceedings{redmon2016you,
    title = {{You only look once: Unified, real-time object detection}},
    year = {2016},
    booktitle = {Proceedings of the IEEE conference on computer vision and pattern recognition},
    author = {Redmon, Joseph and Divvala, Santosh and Girshick, Ross and Farhadi, Ali},
    pages = {779--788}
}

@article{Kainz2015,
    title = {{You Should Use Regression to Detect Cells}},
    year = {2015},
    journal = {Medical Image Computing and Computer-Assisted Intervention},
    author = {Kainz, P and Urschler, M and Schulter, S and Wohlhart, P and Lepetit, V},
    url = {https://www.tugraz.at/fileadmin/user_upload/Institute/ICG/Images/team_bischof/mib/paper_pdfs/2015KainzMICCAI.pdf},
    isbn = {9783319245737},
    doi = {10.1007/978-3-319-24574-4},
    issn = {16113349},
    pmid = {23285570},
    arxivId = {1602.07360}
}

@inproceedings{Larochelle2008zerodata,
    title = {{Zero-data Learning of New Tasks}},
    year = {2008},
    booktitle = {Association for the Advancement of Artificial Intelligence},
    author = {Larochelle, Hugo and Erhan, Dumitru and Bengio, Yoshua}
}

@article{Peng2017,
    title = {{Zero-Shot Deep Domain Adaptation}},
    year = {2017},
    author = {Peng, Kuan-Chuan and Wu, Ziyan and Ernst, Jan},
    month = {7},
    url = {http://arxiv.org/abs/1707.01922},
    arxivId = {1707.01922}
}

@article{Xian2017zeroshot,
    title = {{Zero-Shot Learning - A Comprehensive Evaluation of the Good, the Bad and the Ugly}},
    year = {2018},
    journal = {Transactions on Pattern Analysis and Machine Intelligence},
    author = {Xian, Yongqin and Lampert, Christoph H. and Schiele, Bernt and Akata, Zeynep},
    month = {7},
    url = {http://arxiv.org/abs/1707.00600},
    doi = {10.1109/TPAMI.2018.2857768},
    issn = {01628828},
    arxivId = {1707.00600},
    keywords = {Generalized Zero-shot Learning, Image classification, Transductive Learning, Weakly-Supervised Learning}
}

@article{Socher2013,
    title = {{Zero-Shot Learning Through Cross-Modal Transfer}},
    year = {2013},
    author = {Socher, Richard and Ganjoo, Milind and Sridhar, Hamsa and Bastani, Osbert and Manning, Christopher D. and Ng, Andrew Y.},
    number = {1},
    month = {1},
    pages = {106--107},
    volume = {6},
    url = {http://arxiv.org/abs/1301.3666},
    arxivId = {1301.3666}
}

@inproceedings{Palatucci2009zeroshot,
    title = {{Zero-shot learning with semantic output codes}},
    year = {2009},
    booktitle = {Neural Information Processing Systems},
    author = {Palatucci, Mark and Pomerleau, Dean and Hinton, Geoffrey and Mitchell, Tom M},
    url = {http://www.cs.toronto.edu/~fritz/absps/palatucci.pdf},
    isbn = {9781615679119}
}

@article{PMID2500252,
    title = {{ZFX has a gene structure similar to ZFY, the putative human sex determinant, and escapes X inactivation.}},
    year = {1989},
    journal = {Cell},
    author = {Schneider-G{\"{a}}dicke, A and Beer-Romero, P and Brown, L G and Nussbaum, R and Page, D C},
    number = {7},
    month = {6},
    pages = {1247--58},
    volume = {57},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/2500252},
    issn = {0092-8674},
    pmid = {2500252}
}

@misc{CenterforHistoryandNewMedia,
    title = {{Zotero Quick Start Guide}},
    author = {{Center for History and New Media}},
    url = {http://zotero.org/support/quick_start_guide}
}

@article{Gilbert2010,
    title = {{[Slides] Sparse recovery using sparse matrices}},
    year = {2010},
    journal = {Proceedings of the IEEE},
    author = {Gilbert, Anna and Indyk, Piotr},
    url = {https://people.csail.mit.edu/indyk/ctw.pdf},
    keywords = {Compressed sensing}
}

@misc{_acm_,
    title = {{{\{}ACM{\}} {\{}SIGMOD{\}} Official Website}},
    url = {http://www.sigmod.org/}
}

@misc{hirise_hirise_,
    title = {{{\{}HiRISE{\}} {\{}{\textbackslash}textbar{\}} {\{}High{\}} {\{}Resolution{\}} {\{}Imaging{\}} {\{}Science{\}} {\{}Experiment{\}}}},
    author = {{HiRISE}},
    url = {http://hirise.lpl.arizona.edu/}
}

@misc{hrsc_hrsc_,
    title = {{{\{}HRSC{\}} {\{}Data{\}} {\{}Browser{\}}}},
    author = {{HRSC}},
    url = {http://europlanet.dlr.de/node/index.php?id=209, 2010.}
}

@article{popov_kimsemantic_2004,
    title = {{{\{}KIM{\}}–a semantic platform for information extraction and retrieval}},
    year = {2004},
    journal = {Natural language engineering},
    author = {Popov, B and Kiryakov, A and Ognyanoff, D and Manov, D and Kirilov, A}
}

@article{salamuniccar_lu60645gt_2012,
    title = {{{\{}LU{\}}60645GT and {\{}MA{\}}132843GT catalogues of {\{}Lunar{\}} and {\{}Martian{\}} impact craters developed using a {\{}Crater{\}} {\{}Shape{\}}-based interpolation crater detection algorithm for topography data}},
    shorttitle = {Titan {\{}Through{\}} {\{}Time{\}}: {\{}A{\}} {\{}Workshop{\}} on {\{}Titan{\}}’},
    year = {2012},
    journal = {Planetary and Space Science},
    author = {Salamuni{\'{c}}car, Goran and Lon{\v{c}}ari{\'{c}}, Sven and Mazarico, Erwan},
    number = {1},
    month = {1},
    pages = {236--247},
    volume = {60},
    url = {http://www.sciencedirect.com/science/article/pii/S0032063311002789},
    doi = {10.1016/j.pss.2011.09.003},
    issn = {0032-0633},
    keywords = {Cratering, Image processing, Mars, Moon, Surface}
}

@inproceedings{kowalkiewicz_myportal:_2006,
    title = {{{\{}MyPortal{\}}: Robust extraction and aggregation of web content}},
    shorttitle = {MyPortal},
    year = {2006},
    booktitle = {International Conference on Very Large Data Bases},
    author = {Kowalkiewicz, M and Kaczmarek, T and Abramowicz, W}
}

@inproceedings{phan_peweb:_2004,
    title = {{{\{}PEWeb{\}}: product extraction from the web based on entropy estimation}},
    shorttitle = {PEWeb},
    year = {2004},
    booktitle = {Proceedings of the 2004 {\{}IEEE{\}}/{\{}WIC{\}}/{\{}ACM{\}} International Conference on Web Intelligence},
    author = {Phan, X H and Horiguchi, S and Ho, T B}
}

@misc{_reverb_,
    title = {{{\{}ReVerb{\}} - Open Information Extraction Software}},
    url = {http://reverb.cs.washington.edu/}
}

@article{ha_xpath-wrapper_2010,
    title = {{{\{}XPath{\}}-wrapper induction for data extraction}},
    year = {2010},
    author = {Ha, T Q}
}

@inproceedings{liu_xwrap:_2000,
    title = {{{\{}XWRAP{\}}: An {\{}XML{\}}-enabled wrapper construction system for web information sources}},
    shorttitle = {XWRAP},
    year = {2000},
    booktitle = {International Conference on Data Engineering},
    author = {Liu, L and Pu, C and Han, W}
}

@article{Sorodoc2016,
    title = {{“Look , some green circles!”: Learning to quantify from images}},
    year = {2016},
    journal = {5th Workshop on Vision and Language},
    author = {Sorodoc, Ionut and Lazaridou, Angeliki and Boleda, Gemma and Pezzelle, Sandro and Bernardi, Raffaella},
    pages = {75--79}
}

@article{Huang2019UnderstandingVisualizations,
    title = {{Understanding Generalization through Visualizations}},
    year = {2019},
    author = {Huang, W. Ronny and Emam, Zeyad and Goldblum, Micah and Fowl, Liam and Terry, Justin K. and Huang, Furong and Goldstein, Tom},
    month = {6},
    url = {http://arxiv.org/abs/1906.03291},
    arxivId = {1906.03291}
}