alpha=0.95 temp=0.1 gamma=2.9 seed=25062025
Initialization ...
Here is the filename: graph.txt
grab
N = 279
gamma = 2.9
avg_kp = 2.11111
T = 0.1
idum = 25062025
q = 1
num avg = 20
grid size multiplier coefficient = 1
A. Extract GCC of the network
Saving temporary largest connected component to: /tmp/1758203549_graph.txt_tmp_gcc.net
save temp 
 ctr = 279
grab
num_nodes
grab
B. Infer all model parameters except gamma, T and q
inferred N = 279.007
inferred kp_max = 10.5378
inferred avg_k = 21.1744
inferred mu = 2.33663
inferred Rh = 7.27559
C. Infer radial coordinates
D. Infer angular core coordinates
total nodes for the core = 279
initializing angles
Replica 1
**********************
size = 57
iter = 0
best_iter = 0
L = -1959.76
Lmax = -1959.76
Replica 2
**********************
size = 57
iter = 1
best_iter = 1
L = -1893.84
Lmax = -1893.84
Replica 3
**********************
size = 57
iter = 2
best_iter = 1
L = -2000.33
Lmax = -1893.84
Replica 4
**********************
size = 57
iter = 3
best_iter = 1
L = -2070.3
Lmax = -1893.84
Replica 5
**********************
size = 57
iter = 4
best_iter = 1
L = -1911.59
Lmax = -1893.84
Replica 6
**********************
size = 57
iter = 5
best_iter = 5
L = -1881.36
Lmax = -1881.36
Replica 7
**********************
size = 57
iter = 6
best_iter = 6
L = -1854.97
Lmax = -1854.97
Replica 8
**********************
size = 57
iter = 7
best_iter = 6
L = -1976.46
Lmax = -1854.97
Replica 9
**********************
size = 57
iter = 8
best_iter = 6
L = -1960.45
Lmax = -1854.97
Replica 10
**********************
size = 57
iter = 9
best_iter = 6
L = -1947.96
Lmax = -1854.97
Replica 11
**********************
size = 57
iter = 10
best_iter = 6
L = -1934.71
Lmax = -1854.97
Replica 12
**********************
size = 57
iter = 11
best_iter = 6
L = -1916.42
Lmax = -1854.97
Replica 13
**********************
size = 57
iter = 12
best_iter = 6
L = -1981.87
Lmax = -1854.97
Replica 14
**********************
size = 57
iter = 13
best_iter = 6
L = -1977.36
Lmax = -1854.97
Replica 15
**********************
size = 57
iter = 14
best_iter = 6
L = -1925.61
Lmax = -1854.97
Replica 16
**********************
size = 57
iter = 15
best_iter = 6
L = -1997.14
Lmax = -1854.97
Replica 17
**********************
size = 57
iter = 16
best_iter = 6
L = -1889.22
Lmax = -1854.97
Replica 18
**********************
size = 57
iter = 17
best_iter = 6
L = -1992.58
Lmax = -1854.97
Replica 19
**********************
size = 57
iter = 18
best_iter = 6
L = -1959.4
Lmax = -1854.97
Replica 20
**********************
size = 57
iter = 19
best_iter = 6
L = -1935.56
Lmax = -1854.97
Loptimal = -1854.97
resuming the rest of the calculations
iter = 10
noise = 0.397699;    iter= 10/20; L = -2422.17
i = 10
mult = 1.14085
min = 65.4769
max = 74.6994
iter = 11
noise = 0.358929;    iter= 11/20; L = -3048.8
i = 11
mult = 1.14085
min = 74.6994
max = 85.2208
iter = 12
noise = 0.320159;    iter= 12/20; L = -3702.99
i = 12
mult = 1.14085
min = 85.2208
max = 97.2242
iter = 13
noise = 0.281389;    iter= 13/20; L = -4881.7
i = 13
mult = 1.14085
min = 97.2242
max = 110.918
iter = 14
noise = 0.242619;    iter= 14/20; L = -5898.31
i = 14
mult = 1.14085
min = 110.918
max = 126.541
iter = 15
noise = 0.20385;    iter= 15/20; L = -7176.63
i = 15
mult = 1.14085
min = 126.541
max = 144.365
iter = 16
noise = 0.16508;    iter= 16/20; L = -9034.63
i = 16
mult = 1.14085
min = 144.365
max = 164.698
iter = 17
noise = 0.12631;    iter= 17/20; L = -10735.1
i = 17
mult = 1.14085
min = 164.698
max = 187.896
iter = 18
noise = 0.0875398;    iter= 18/20; L = -12876.2
i = 18
mult = 1.14085
min = 187.896
max = 214.361
iter = 19
noise = 0.0487699;    iter= 19/20; L = -15250.3
i = 19
mult = 1.14085
min = 214.361
max = 244.554
iter = 20
noise = 0.01;    iter= 20/20; L = -17205.8
i = 20
mult = 1.14085
min = 244.554
max = 279
iter = 21
noise = -0.0287699;    iter= 21/20; L = -18621.8
i = 21
mult = 1.14085
min = 279
max = 318.297
Control sum = 279
E. Infer remaining node coordinates
embed remaining nodes
embed list compiled
embed list size = 0
output resulting angles
output filename = results/connectome/CElegans//kvk-coordinates.txt
E2. Massage All
error value = 0.0001
core size = 279
start core massaging...
max_error = 1.64399
iter = 0; L = -18541
max_error = 2.90513
iter = 1; L = -18589.8
max_error = 2.88261
iter = 2; L = -18379.9
max_error = 1.82415
iter = 3; L = -18291.1
max_error = 2.02683
iter = 4; L = -18478.6
max_error = 2.00431
iter = 5; L = -18612.7
max_error = 1.89171
iter = 6; L = -18531.2
max_error = 0.855774
iter = 7; L = -18515.2
max_error = 0.878295
iter = 8; L = -18420.8
max_error = 0.833254
iter = 9; L = -18610.3
max_error = 1.12602
iter = 10; L = -18328
max_error = 0.810734
iter = 11; L = -18372
max_error = 1.03594
iter = 12; L = -18317.1
max_error = 1.77911
iter = 13; L = -18337.1
max_error = 1.84667
iter = 14; L = -18281.3
max_error = 0.810734
iter = 15; L = -18335.1
max_error = 3.08529
iter = 16; L = -18453.2
max_error = 1.19358
iter = 17; L = -18471.9
max_error = 1.37374
iter = 18; L = -18638.9
max_error = 1.73407
iter = 19; L = -18388.6
Add small noise to angular coordinates
output coordinates
