alpha=0.995 temp=0.1 gamma=2.99 seed=25062025
Initialization ...
Here is the filename: graph.txt
grab
N = 350
gamma = 2.99
avg_kp = 2.0101
T = 0.1
idum = 25062025
q = 1
num avg = 20
grid size multiplier coefficient = 1
A. Extract GCC of the network
Saving temporary largest connected component to: /tmp/1758200659_graph.txt_tmp_gcc.net
save temp 
 ctr = 350
grab
num_nodes
grab
B. Infer all model parameters except gamma, T and q
inferred N = 350.007
inferred kp_max = 11.9162
inferred avg_k = 19.7484
inferred mu = 2.4038
inferred Rh = 7.67235
C. Infer radial coordinates
D. Infer angular core coordinates
total nodes for the core = 336
initializing angles
Replica 1
**********************
size = 62
iter = 0
best_iter = 0
L = -2992.49
Lmax = -2992.49
Replica 2
**********************
size = 62
iter = 1
best_iter = 0
L = -3014.07
Lmax = -2992.49
Replica 3
**********************
size = 62
iter = 2
best_iter = 2
L = -2925.56
Lmax = -2925.56
Replica 4
**********************
size = 62
iter = 3
best_iter = 2
L = -2954.36
Lmax = -2925.56
Replica 5
**********************
size = 62
iter = 4
best_iter = 2
L = -3049.04
Lmax = -2925.56
Replica 6
**********************
size = 62
iter = 5
best_iter = 2
L = -3010.61
Lmax = -2925.56
Replica 7
**********************
size = 62
iter = 6
best_iter = 6
L = -2923.12
Lmax = -2923.12
Replica 8
**********************
size = 62
iter = 7
best_iter = 6
L = -2925.49
Lmax = -2923.12
Replica 9
**********************
size = 62
iter = 8
best_iter = 6
L = -2958.4
Lmax = -2923.12
Replica 10
**********************
size = 62
iter = 9
best_iter = 6
L = -3013.02
Lmax = -2923.12
Replica 11
**********************
size = 62
iter = 10
best_iter = 6
L = -2980.37
Lmax = -2923.12
Replica 12
**********************
size = 62
iter = 11
best_iter = 11
L = -2869.19
Lmax = -2869.19
Replica 13
**********************
size = 62
iter = 12
best_iter = 11
L = -3040.67
Lmax = -2869.19
Replica 14
**********************
size = 62
iter = 13
best_iter = 11
L = -2938.22
Lmax = -2869.19
Replica 15
**********************
size = 62
iter = 14
best_iter = 11
L = -3045.43
Lmax = -2869.19
Replica 16
**********************
size = 62
iter = 15
best_iter = 11
L = -2989.17
Lmax = -2869.19
Replica 17
**********************
size = 62
iter = 16
best_iter = 11
L = -3081.41
Lmax = -2869.19
Replica 18
**********************
size = 62
iter = 17
best_iter = 11
L = -2969.05
Lmax = -2869.19
Replica 19
**********************
size = 62
iter = 18
best_iter = 11
L = -3007.02
Lmax = -2869.19
Replica 20
**********************
size = 62
iter = 19
best_iter = 11
L = -2981.4
Lmax = -2869.19
Loptimal = -2869.19
resuming the rest of the calculations
iter = 10
noise = 0.397699;    iter= 10/20; L = -3975.67
i = 10
mult = 1.1515
min = 71.19
max = 81.9756
iter = 11
noise = 0.358929;    iter= 11/20; L = -5232.04
i = 11
mult = 1.1515
min = 81.9756
max = 94.3952
iter = 12
noise = 0.320159;    iter= 12/20; L = -6395.7
i = 12
mult = 1.1515
min = 94.3952
max = 108.697
iter = 13
noise = 0.281389;    iter= 13/20; L = -8467.81
i = 13
mult = 1.1515
min = 108.697
max = 125.164
iter = 14
noise = 0.242619;    iter= 14/20; L = -9787.71
i = 14
mult = 1.1515
min = 125.164
max = 144.127
iter = 15
noise = 0.20385;    iter= 15/20; L = -11902.5
i = 15
mult = 1.1515
min = 144.127
max = 165.963
iter = 16
noise = 0.16508;    iter= 16/20; L = -14742.1
i = 16
mult = 1.1515
min = 165.963
max = 191.107
iter = 17
noise = 0.12631;    iter= 17/20; L = -17819.3
i = 17
mult = 1.1515
min = 191.107
max = 220.061
iter = 18
noise = 0.0875398;    iter= 18/20; L = -20796.8
i = 18
mult = 1.1515
min = 220.061
max = 253.401
iter = 19
noise = 0.0487699;    iter= 19/20; L = -24102.1
i = 19
mult = 1.1515
min = 253.401
max = 291.792
iter = 20
noise = 0.01;    iter= 20/20; L = -26926.4
i = 20
mult = 1.1515
min = 291.792
max = 336
iter = 21
noise = -0.0287699;    iter= 21/20; L = -28695.1
i = 21
mult = 1.1515
min = 336
max = 386.905
Control sum = 336
E. Infer remaining node coordinates
embed remaining nodes
embed list compiled
embed list size = 14
remaining num to embed = 0
output resulting angles
output filename = results/connectome/Drosophila1//kvk-coordinates.txt
E2. Massage All
error value = 0.0001
core size = 350
start core massaging...
max_error = 2.1288
iter = 0; L = -28469.1
max_error = 2.71075
iter = 1; L = -28718.2
max_error = 2.71075
iter = 2; L = -28863.3
max_error = 1.74134
iter = 3; L = -28787.6
max_error = 2.67484
iter = 4; L = -28919.7
max_error = 1.8311
iter = 5; L = -29084.2
max_error = 2.80051
iter = 6; L = -29222.9
max_error = 2.7646
iter = 7; L = -29005.6
max_error = 2.67484
iter = 8; L = -29261.3
max_error = 1.7952
iter = 9; L = -29069.4
max_error = 2.7287
iter = 10; L = -29150.3
max_error = 2.67484
iter = 11; L = -29321.2
max_error = 1.50796
iter = 12; L = -29186.9
max_error = 1.20278
iter = 13; L = -29343.7
max_error = 1.99267
iter = 14; L = -29124.7
max_error = 2.01062
iter = 15; L = -29188
max_error = 2.01062
iter = 16; L = -28933.8
max_error = 2.7646
iter = 17; L = -29144.7
max_error = 1.31049
iter = 18; L = -29215.2
max_error = 2.60303
iter = 19; L = -28815.8
Add small noise to angular coordinates
output coordinates
