alpha=0.505 temp=0.1 gamma=2.01 seed=25062025
Initialization ...
Here is the filename: graph.txt
grab
N = 1770
gamma = 2.01
avg_kp = 101
T = 0.1
idum = 25062025
q = 1
num avg = 20
grid size multiplier coefficient = 1
A. Extract GCC of the network
Saving temporary largest connected component to: /tmp/1758200817_graph.txt_tmp_gcc.net
save temp 
 ctr = 1770
grab
num_nodes
grab
B. Infer all model parameters except gamma, T and q
inferred N = 1916.01
inferred kp_max = 628.541
inferred avg_k = 2387.09
inferred mu = 0.115088
inferred Rh = 17.1507
C. Infer radial coordinates
D. Infer angular core coordinates
total nodes for the core = 1380
initializing angles
Replica 1
**********************
size = 109
iter = 0
best_iter = 0
L = -8647.51
Lmax = -8647.51
Replica 2
**********************
size = 109
iter = 1
best_iter = 0
L = -8686.38
Lmax = -8647.51
Replica 3
**********************
size = 109
iter = 2
best_iter = 0
L = -8795.59
Lmax = -8647.51
Replica 4
**********************
size = 109
iter = 3
best_iter = 3
L = -8597.27
Lmax = -8597.27
Replica 5
**********************
size = 109
iter = 4
best_iter = 3
L = -8657.28
Lmax = -8597.27
Replica 6
**********************
size = 109
iter = 5
best_iter = 3
L = -8761.13
Lmax = -8597.27
Replica 7
**********************
size = 109
iter = 6
best_iter = 6
L = -8559.41
Lmax = -8559.41
Replica 8
**********************
size = 109
iter = 7
best_iter = 6
L = -8616.3
Lmax = -8559.41
Replica 9
**********************
size = 109
iter = 8
best_iter = 6
L = -8652.77
Lmax = -8559.41
Replica 10
**********************
size = 109
iter = 9
best_iter = 6
L = -8625.67
Lmax = -8559.41
Replica 11
**********************
size = 109
iter = 10
best_iter = 6
L = -8771.67
Lmax = -8559.41
Replica 12
**********************
size = 109
iter = 11
best_iter = 6
L = -8573.77
Lmax = -8559.41
Replica 13
**********************
size = 109
iter = 12
best_iter = 6
L = -8699.91
Lmax = -8559.41
Replica 14
**********************
size = 109
iter = 13
best_iter = 6
L = -8573.31
Lmax = -8559.41
Replica 15
**********************
size = 109
iter = 14
best_iter = 6
L = -8650.87
Lmax = -8559.41
Replica 16
**********************
size = 109
iter = 15
best_iter = 6
L = -8625.87
Lmax = -8559.41
Replica 17
**********************
size = 109
iter = 16
best_iter = 6
L = -8774.93
Lmax = -8559.41
Replica 18
**********************
size = 109
iter = 17
best_iter = 6
L = -8606.86
Lmax = -8559.41
Replica 19
**********************
size = 109
iter = 18
best_iter = 6
L = -8682.44
Lmax = -8559.41
Replica 20
**********************
size = 109
iter = 19
best_iter = 6
L = -8759.48
Lmax = -8559.41
Loptimal = -8559.41
resuming the rest of the calculations
iter = 10
noise = 0.397699;    iter= 10/20; L = -11871.4
i = 10
mult = 1.23578
min = 134.435
max = 166.132
iter = 11
noise = 0.358929;    iter= 11/20; L = -16498.5
i = 11
mult = 1.23578
min = 166.132
max = 205.304
iter = 12
noise = 0.320159;    iter= 12/20; L = -22122.7
i = 12
mult = 1.23578
min = 205.304
max = 253.711
iter = 13
noise = 0.281389;    iter= 13/20; L = -28954.9
i = 13
mult = 1.23578
min = 253.711
max = 313.532
iter = 14
noise = 0.242619;    iter= 14/20; L = -37708.8
i = 14
mult = 1.23578
min = 313.532
max = 387.458
iter = 15
noise = 0.20385;    iter= 15/20; L = -46358.6
i = 15
mult = 1.23578
min = 387.458
max = 478.814
iter = 16
noise = 0.16508;    iter= 16/20; L = -56581.7
i = 16
mult = 1.23578
min = 478.814
max = 591.71
iter = 17
noise = 0.12631;    iter= 17/20; L = -70029.9
i = 17
mult = 1.23578
min = 591.71
max = 731.226
iter = 18
noise = 0.0875398;    iter= 18/20; L = -80975.9
i = 18
mult = 1.23578
min = 731.226
max = 903.637
iter = 19
noise = 0.0487699;    iter= 19/20; L = -92270.2
i = 19
mult = 1.23578
min = 903.637
max = 1116.7
iter = 20
noise = 0.01;    iter= 20/20; L = -104818
i = 20
mult = 1.23578
min = 1116.7
max = 1380
iter = 21
noise = -0.0287699;    iter= 21/20; L = -114791
i = 21
mult = 1.23578
min = 1380
max = 1705.38
Control sum = 1380
E. Infer remaining node coordinates
embed remaining nodes
embed list compiled
embed list size = 390
remaining num to embed = 300
remaining num to embed = 200
remaining num to embed = 100
remaining num to embed = 0
output resulting angles
output filename = results/connectome/Drosophila2//kvk-coordinates.txt
E2. Massage All
error value = 0.0001
core size = 1770
start core massaging...
max_error = 1.6432
iter = 0; L = -113318
max_error = 1.82658
iter = 1; L = -116996
max_error = 2.79726
iter = 2; L = -116866
max_error = 2.54476
iter = 3; L = -117113
max_error = 2.57099
iter = 4; L = -115862
max_error = 1.4593
iter = 5; L = -115677
max_error = 2.56115
iter = 6; L = -116076
max_error = 2.27913
iter = 7; L = -115934
max_error = 1.59375
iter = 8; L = -116988
max_error = 1.46258
iter = 9; L = -117144
max_error = 2.5054
iter = 10; L = -116368
max_error = 2.5054
iter = 11; L = -116110
max_error = 2.53164
iter = 12; L = -116797
max_error = 2.54148
iter = 13; L = -115432
max_error = 2.44638
iter = 14; L = -115828
max_error = 2.59067
iter = 15; L = -115925
max_error = 2.50868
iter = 16; L = -115774
max_error = 1.92824
iter = 17; L = -115332
max_error = 2.51196
iter = 18; L = -115551
max_error = 2.28241
iter = 19; L = -116043
Add small noise to angular coordinates
output coordinates
