alpha=0.925 temp=0.1 gamma=2.85 seed=25062025
Initialization ...
Here is the filename: graph.txt
grab
N = 503
gamma = 2.85
avg_kp = 2.17647
T = 0.1
idum = 25062025
q = 1
num avg = 20
grid size multiplier coefficient = 1
A. Extract GCC of the network
Saving temporary largest connected component to: /tmp/1758199014_graph.txt_tmp_gcc.net
save temp 
 ctr = 503
grab
num_nodes
grab
B. Infer all model parameters except gamma, T and q
inferred N = 503
inferred kp_max = 10.1676
inferred avg_k = 123.602
inferred mu = 12.8328
inferred Rh = 5.04771
C. Infer radial coordinates
D. Infer angular core coordinates
total nodes for the core = 502
initializing angles
Replica 1
**********************
size = 73
iter = 0
best_iter = 0
L = -249.991
Lmax = -249.991
Replica 2
**********************
size = 73
iter = 1
best_iter = 0
L = -256.784
Lmax = -249.991
Replica 3
**********************
size = 73
iter = 2
best_iter = 0
L = -255.337
Lmax = -249.991
Replica 4
**********************
size = 73
iter = 3
best_iter = 3
L = -217.861
Lmax = -217.861
Replica 5
**********************
size = 73
iter = 4
best_iter = 3
L = -255.045
Lmax = -217.861
Replica 6
**********************
size = 73
iter = 5
best_iter = 3
L = -259.936
Lmax = -217.861
Replica 7
**********************
size = 73
iter = 6
best_iter = 3
L = -234.222
Lmax = -217.861
Replica 8
**********************
size = 73
iter = 7
best_iter = 3
L = -248.54
Lmax = -217.861
Replica 9
**********************
size = 73
iter = 8
best_iter = 3
L = -259.48
Lmax = -217.861
Replica 10
**********************
size = 73
iter = 9
best_iter = 3
L = -269.983
Lmax = -217.861
Replica 11
**********************
size = 73
iter = 10
best_iter = 3
L = -259.796
Lmax = -217.861
Replica 12
**********************
size = 73
iter = 11
best_iter = 3
L = -243.415
Lmax = -217.861
Replica 13
**********************
size = 73
iter = 12
best_iter = 3
L = -258.533
Lmax = -217.861
Replica 14
**********************
size = 73
iter = 13
best_iter = 3
L = -239.749
Lmax = -217.861
Replica 15
**********************
size = 73
iter = 14
best_iter = 3
L = -256.915
Lmax = -217.861
Replica 16
**********************
size = 73
iter = 15
best_iter = 3
L = -249.535
Lmax = -217.861
Replica 17
**********************
size = 73
iter = 16
best_iter = 3
L = -276.337
Lmax = -217.861
Replica 18
**********************
size = 73
iter = 17
best_iter = 3
L = -242.888
Lmax = -217.861
Replica 19
**********************
size = 73
iter = 18
best_iter = 3
L = -260.432
Lmax = -217.861
Replica 20
**********************
size = 73
iter = 19
best_iter = 3
L = -252.592
Lmax = -217.861
Loptimal = -217.861
resuming the rest of the calculations
iter = 10
noise = 0.397699;    iter= 10/20; L = -680.693
i = 10
mult = 1.17485
min = 85.2871
max = 100.2
iter = 11
noise = 0.358929;    iter= 11/20; L = -1515.69
i = 11
mult = 1.17485
min = 100.2
max = 117.72
iter = 12
noise = 0.320159;    iter= 12/20; L = -2719.5
i = 12
mult = 1.17485
min = 117.72
max = 138.304
iter = 13
noise = 0.281389;    iter= 13/20; L = -5035.94
i = 13
mult = 1.17485
min = 138.304
max = 162.487
iter = 14
noise = 0.242619;    iter= 14/20; L = -7710.71
i = 14
mult = 1.17485
min = 162.487
max = 190.898
iter = 15
noise = 0.20385;    iter= 15/20; L = -11190.7
i = 15
mult = 1.17485
min = 190.898
max = 224.277
iter = 16
noise = 0.16508;    iter= 16/20; L = -15913.7
i = 16
mult = 1.17485
min = 224.277
max = 263.493
iter = 17
noise = 0.12631;    iter= 17/20; L = -22346.6
i = 17
mult = 1.17485
min = 263.493
max = 309.566
iter = 18
noise = 0.0875398;    iter= 18/20; L = -30522.1
i = 18
mult = 1.17485
min = 309.566
max = 363.694
iter = 19
noise = 0.0487699;    iter= 19/20; L = -36442.8
i = 19
mult = 1.17485
min = 363.694
max = 427.287
iter = 20
noise = 0.01;    iter= 20/20; L = -44381.6
i = 20
mult = 1.17485
min = 427.287
max = 502
iter = 21
noise = -0.0287699;    iter= 21/20; L = -57256.9
i = 21
mult = 1.17485
min = 502
max = 589.776
Control sum = 502
E. Infer remaining node coordinates
embed remaining nodes
embed list compiled
embed list size = 1
remaining num to embed = 0
output resulting angles
output filename = results/connectome/Rat1//kvk-coordinates.txt
E2. Massage All
error value = 0.0001
core size = 503
start core massaging...
max_error = 2.87569
iter = 0; L = -57477.8
max_error = 3.0604
iter = 1; L = -57180.8
max_error = 3.08538
iter = 2; L = -57316.7
max_error = 2.98545
iter = 3; L = -57473.9
max_error = 3.12286
iter = 4; L = -57069
max_error = 2.46081
iter = 5; L = -57254.3
max_error = 2.67316
iter = 6; L = -57199.6
max_error = 2.51078
iter = 7; L = -57297.8
max_error = 2.7606
iter = 8; L = -57203.4
max_error = 2.59822
iter = 9; L = -57517.5
max_error = 2.86054
iter = 10; L = -57881.3
max_error = 2.7731
iter = 11; L = -57559.4
max_error = 2.72313
iter = 12; L = -57528
max_error = 2.73562
iter = 13; L = -57788.7
max_error = 2.49828
iter = 14; L = -57315.2
max_error = 2.54825
iter = 15; L = -57344.2
max_error = 3.04791
iter = 16; L = -57312.6
max_error = 2.86054
iter = 17; L = -57646.8
max_error = 2.53576
iter = 18; L = -57537.3
max_error = 2.37337
iter = 19; L = -57279.1
Add small noise to angular coordinates
output coordinates
