alpha=0.79 temp=0.1 gamma=2.58 seed=25062025
Initialization ...
Here is the filename: graph.txt
grab
N = 502
gamma = 2.58
avg_kp = 2.72414
T = 0.1
idum = 25062025
q = 1
num avg = 20
grid size multiplier coefficient = 1
A. Extract GCC of the network
Saving temporary largest connected component to: /tmp/1758199520_graph.txt_tmp_gcc.net
save temp 
 ctr = 502
grab
num_nodes
grab
B. Infer all model parameters except gamma, T and q
inferred N = 502
inferred kp_max = 10.2033
inferred avg_k = 179.307
inferred mu = 11.8834
inferred Rh = 5.19746
C. Infer radial coordinates
D. Infer angular core coordinates
total nodes for the core = 502
initializing angles
Replica 1
**********************
size = 73
iter = 0
best_iter = 0
L = -204.212
Lmax = -204.212
Replica 2
**********************
size = 73
iter = 1
best_iter = 0
L = -211.287
Lmax = -204.212
Replica 3
**********************
size = 73
iter = 2
best_iter = 2
L = -196.514
Lmax = -196.514
Replica 4
**********************
size = 73
iter = 3
best_iter = 2
L = -196.972
Lmax = -196.514
Replica 5
**********************
size = 73
iter = 4
best_iter = 2
L = -198.939
Lmax = -196.514
Replica 6
**********************
size = 73
iter = 5
best_iter = 2
L = -209.319
Lmax = -196.514
Replica 7
**********************
size = 73
iter = 6
best_iter = 2
L = -199.912
Lmax = -196.514
Replica 8
**********************
size = 73
iter = 7
best_iter = 7
L = -191.903
Lmax = -191.903
Replica 9
**********************
size = 73
iter = 8
best_iter = 7
L = -200.101
Lmax = -191.903
Replica 10
**********************
size = 73
iter = 9
best_iter = 7
L = -195.379
Lmax = -191.903
Replica 11
**********************
size = 73
iter = 10
best_iter = 7
L = -200.183
Lmax = -191.903
Replica 12
**********************
size = 73
iter = 11
best_iter = 11
L = -190.997
Lmax = -190.997
Replica 13
**********************
size = 73
iter = 12
best_iter = 11
L = -193.525
Lmax = -190.997
Replica 14
**********************
size = 73
iter = 13
best_iter = 11
L = -213.269
Lmax = -190.997
Replica 15
**********************
size = 73
iter = 14
best_iter = 11
L = -198.867
Lmax = -190.997
Replica 16
**********************
size = 73
iter = 15
best_iter = 11
L = -203.017
Lmax = -190.997
Replica 17
**********************
size = 73
iter = 16
best_iter = 11
L = -195.082
Lmax = -190.997
Replica 18
**********************
size = 73
iter = 17
best_iter = 11
L = -202.645
Lmax = -190.997
Replica 19
**********************
size = 73
iter = 18
best_iter = 11
L = -211.216
Lmax = -190.997
Replica 20
**********************
size = 73
iter = 19
best_iter = 11
L = -216.187
Lmax = -190.997
Loptimal = -190.997
resuming the rest of the calculations
iter = 10
noise = 0.397699;    iter= 10/20; L = -571.4
i = 10
mult = 1.17485
min = 85.2871
max = 100.2
iter = 11
noise = 0.358929;    iter= 11/20; L = -1406.52
i = 11
mult = 1.17485
min = 100.2
max = 117.72
iter = 12
noise = 0.320159;    iter= 12/20; L = -2646.42
i = 12
mult = 1.17485
min = 117.72
max = 138.304
iter = 13
noise = 0.281389;    iter= 13/20; L = -4364.09
i = 13
mult = 1.17485
min = 138.304
max = 162.487
iter = 14
noise = 0.242619;    iter= 14/20; L = -7466.38
i = 14
mult = 1.17485
min = 162.487
max = 190.898
iter = 15
noise = 0.20385;    iter= 15/20; L = -10856.2
i = 15
mult = 1.17485
min = 190.898
max = 224.277
iter = 16
noise = 0.16508;    iter= 16/20; L = -15930.9
i = 16
mult = 1.17485
min = 224.277
max = 263.493
iter = 17
noise = 0.12631;    iter= 17/20; L = -22051.1
i = 17
mult = 1.17485
min = 263.493
max = 309.566
iter = 18
noise = 0.0875398;    iter= 18/20; L = -30533.6
i = 18
mult = 1.17485
min = 309.566
max = 363.694
iter = 19
noise = 0.0487699;    iter= 19/20; L = -38418.8
i = 19
mult = 1.17485
min = 363.694
max = 427.287
iter = 20
noise = 0.01;    iter= 20/20; L = -45618.1
i = 20
mult = 1.17485
min = 427.287
max = 502
iter = 21
noise = -0.0287699;    iter= 21/20; L = -57961.1
i = 21
mult = 1.17485
min = 502
max = 589.776
Control sum = 502
E. Infer remaining node coordinates
embed remaining nodes
embed list compiled
embed list size = 0
output resulting angles
output filename = results/connectome/Rat2//kvk-coordinates.txt
E2. Massage All
error value = 0.0001
core size = 502
start core massaging...
max_error = 2.70352
iter = 0; L = -57730.5
max_error = 2.46571
iter = 1; L = -57968.8
max_error = 2.65346
iter = 2; L = -58141.6
max_error = 2.44068
iter = 3; L = -57743.1
max_error = 2.81617
iter = 4; L = -58153.2
max_error = 2.8412
iter = 5; L = -57695.8
max_error = 2.51578
iter = 6; L = -57510
max_error = 2.24042
iter = 7; L = -57775
max_error = 2.44068
iter = 8; L = -57732.1
max_error = 2.59088
iter = 9; L = -57686.6
max_error = 2.66597
iter = 10; L = -57601.3
max_error = 2.80365
iter = 11; L = -57814.2
max_error = 2.82869
iter = 12; L = -57735.4
max_error = 2.56584
iter = 13; L = -58047
max_error = 2.57836
iter = 14; L = -57898.5
max_error = 2.87875
iter = 15; L = -57502.6
max_error = 2.59088
iter = 16; L = -57878.1
max_error = 2.3781
iter = 17; L = -57799.6
max_error = 2.61591
iter = 18; L = -57906.7
max_error = 2.94133
iter = 19; L = -58148.7
Add small noise to angular coordinates
output coordinates
