alpha=0.615 temp=0.1 gamma=2.23 seed=25062025
Initialization ...
Here is the filename: graph.txt
grab
N = 610
gamma = 2.23
avg_kp = 5.34783
T = 0.1
idum = 25062025
q = 1
num avg = 20
grid size multiplier coefficient = 1
A. Extract GCC of the network
Saving temporary largest connected component to: /tmp/1758200022_graph.txt_tmp_gcc.net
save temp 
 ctr = 610
grab
num_nodes
grab
B. Infer all model parameters except gamma, T and q
inferred N = 610
inferred kp_max = 13.8391
inferred avg_k = 244.522
inferred mu = 4.20501
inferred Rh = 7.66491
C. Infer radial coordinates
D. Infer angular core coordinates
total nodes for the core = 610
initializing angles
Replica 1
**********************
size = 78
iter = 0
best_iter = 0
L = -7842.52
Lmax = -7842.52
Replica 2
**********************
size = 78
iter = 1
best_iter = 0
L = -7878.47
Lmax = -7842.52
Replica 3
**********************
size = 78
iter = 2
best_iter = 2
L = -7702.5
Lmax = -7702.5
Replica 4
**********************
size = 78
iter = 3
best_iter = 2
L = -7959.34
Lmax = -7702.5
Replica 5
**********************
size = 78
iter = 4
best_iter = 2
L = -7949.89
Lmax = -7702.5
Replica 6
**********************
size = 78
iter = 5
best_iter = 2
L = -7805.49
Lmax = -7702.5
Replica 7
**********************
size = 78
iter = 6
best_iter = 2
L = -7927.55
Lmax = -7702.5
Replica 8
**********************
size = 78
iter = 7
best_iter = 2
L = -7735.6
Lmax = -7702.5
Replica 9
**********************
size = 78
iter = 8
best_iter = 2
L = -7959.31
Lmax = -7702.5
Replica 10
**********************
size = 78
iter = 9
best_iter = 2
L = -7952.45
Lmax = -7702.5
Replica 11
**********************
size = 78
iter = 10
best_iter = 2
L = -7817.55
Lmax = -7702.5
Replica 12
**********************
size = 78
iter = 11
best_iter = 2
L = -7751.15
Lmax = -7702.5
Replica 13
**********************
size = 78
iter = 12
best_iter = 2
L = -7800.69
Lmax = -7702.5
Replica 14
**********************
size = 78
iter = 13
best_iter = 2
L = -7981.91
Lmax = -7702.5
Replica 15
**********************
size = 78
iter = 14
best_iter = 2
L = -7921.91
Lmax = -7702.5
Replica 16
**********************
size = 78
iter = 15
best_iter = 2
L = -7841.23
Lmax = -7702.5
Replica 17
**********************
size = 78
iter = 16
best_iter = 2
L = -7807.25
Lmax = -7702.5
Replica 18
**********************
size = 78
iter = 17
best_iter = 2
L = -7862.19
Lmax = -7702.5
Replica 19
**********************
size = 78
iter = 18
best_iter = 2
L = -7824.61
Lmax = -7702.5
Replica 20
**********************
size = 78
iter = 19
best_iter = 2
L = -7771.26
Lmax = -7702.5
Loptimal = -7702.5
resuming the rest of the calculations
iter = 10
noise = 0.397699;    iter= 10/20; L = -10777.8
i = 10
mult = 1.18636
min = 93.1033
max = 110.454
iter = 11
noise = 0.358929;    iter= 11/20; L = -14807.5
i = 11
mult = 1.18636
min = 110.454
max = 131.037
iter = 12
noise = 0.320159;    iter= 12/20; L = -20200.4
i = 12
mult = 1.18636
min = 131.037
max = 155.457
iter = 13
noise = 0.281389;    iter= 13/20; L = -26563
i = 13
mult = 1.18636
min = 155.457
max = 184.427
iter = 14
noise = 0.242619;    iter= 14/20; L = -35781
i = 14
mult = 1.18636
min = 184.427
max = 218.796
iter = 15
noise = 0.20385;    iter= 15/20; L = -47494.1
i = 15
mult = 1.18636
min = 218.796
max = 259.57
iter = 16
noise = 0.16508;    iter= 16/20; L = -64084.3
i = 16
mult = 1.18636
min = 259.57
max = 307.943
iter = 17
noise = 0.12631;    iter= 17/20; L = -85269.2
i = 17
mult = 1.18636
min = 307.943
max = 365.33
iter = 18
noise = 0.0875398;    iter= 18/20; L = -109005
i = 18
mult = 1.18636
min = 365.33
max = 433.411
iter = 19
noise = 0.0487699;    iter= 19/20; L = -134981
i = 19
mult = 1.18636
min = 433.411
max = 514.18
iter = 20
noise = 0.01;    iter= 20/20; L = -161716
i = 20
mult = 1.18636
min = 514.18
max = 610
iter = 21
noise = -0.0287699;    iter= 21/20; L = -184935
i = 21
mult = 1.18636
min = 610
max = 723.677
Control sum = 610
E. Infer remaining node coordinates
embed remaining nodes
embed list compiled
embed list size = 0
output resulting angles
output filename = results/connectome/ZebraFinch2//kvk-coordinates.txt
E2. Massage All
error value = 0.0001
core size = 610
start core massaging...
max_error = 3.05919
iter = 0; L = -184827
max_error = 3.05919
iter = 1; L = -184745
max_error = 2.85318
iter = 2; L = -184954
max_error = 2.85318
iter = 3; L = -184728
max_error = 2.46177
iter = 4; L = -184819
max_error = 2.91499
iter = 5; L = -184992
max_error = 2.95619
iter = 6; L = -185146
max_error = 2.39997
iter = 7; L = -185008
max_error = 2.39997
iter = 8; L = -185025
max_error = 2.34847
iter = 9; L = -184913
max_error = 2.45147
iter = 10; L = -184977
max_error = 3.03859
iter = 11; L = -185018
max_error = 2.36907
iter = 12; L = -185076
max_error = 3.01799
iter = 13; L = -185046
max_error = 2.98709
iter = 14; L = -184695
max_error = 2.50297
iter = 15; L = -185046
max_error = 2.59568
iter = 16; L = -184807
max_error = 3.00769
iter = 17; L = -184773
max_error = 3.03859
iter = 18; L = -184813
max_error = 2.65748
iter = 19; L = -184952
Add small noise to angular coordinates
output coordinates
