alpha=0.505 temp=0.1 gamma=2.01 seed=25062025
Initialization ...
Here is the filename: graph.txt
grab
N = 1180
gamma = 2.01
avg_kp = 101
T = 0.1
idum = 25062025
q = 1
num avg = 20
grid size multiplier coefficient = 1
A. Extract GCC of the network
Saving temporary largest connected component to: /tmp/1758222333_graph.txt_tmp_gcc.net
save temp 
 ctr = 1180
grab
num_nodes
grab
B. Infer all model parameters except gamma, T and q
inferred N = 1259.83
inferred kp_max = 732.102
inferred avg_k = 2548.19
inferred mu = 0.122855
inferred Rh = 16.1815
C. Infer radial coordinates
D. Infer angular core coordinates
total nodes for the core = 1180
initializing angles
Replica 1
**********************
size = 102
iter = 0
best_iter = 0
L = -2115.54
Lmax = -2115.54
Replica 2
**********************
size = 102
iter = 1
best_iter = 1
L = -2072.39
Lmax = -2072.39
Replica 3
**********************
size = 102
iter = 2
best_iter = 2
L = -2006.51
Lmax = -2006.51
Replica 4
**********************
size = 102
iter = 3
best_iter = 2
L = -2117.98
Lmax = -2006.51
Replica 5
**********************
size = 102
iter = 4
best_iter = 2
L = -2149.12
Lmax = -2006.51
Replica 6
**********************
size = 102
iter = 5
best_iter = 5
L = -2003.23
Lmax = -2003.23
Replica 7
**********************
size = 102
iter = 6
best_iter = 5
L = -2022.51
Lmax = -2003.23
Replica 8
**********************
size = 102
iter = 7
best_iter = 5
L = -2015.04
Lmax = -2003.23
Replica 9
**********************
size = 102
iter = 8
best_iter = 5
L = -2121.57
Lmax = -2003.23
Replica 10
**********************
size = 102
iter = 9
best_iter = 5
L = -2180.49
Lmax = -2003.23
Replica 11
**********************
size = 102
iter = 10
best_iter = 5
L = -2149.49
Lmax = -2003.23
Replica 12
**********************
size = 102
iter = 11
best_iter = 5
L = -2105.98
Lmax = -2003.23
Replica 13
**********************
size = 102
iter = 12
best_iter = 12
L = -1963.03
Lmax = -1963.03
Replica 14
**********************
size = 102
iter = 13
best_iter = 12
L = -2110.22
Lmax = -1963.03
Replica 15
**********************
size = 102
iter = 14
best_iter = 12
L = -2067.15
Lmax = -1963.03
Replica 16
**********************
size = 102
iter = 15
best_iter = 12
L = -2204.29
Lmax = -1963.03
Replica 17
**********************
size = 102
iter = 16
best_iter = 12
L = -2091.97
Lmax = -1963.03
Replica 18
**********************
size = 102
iter = 17
best_iter = 12
L = -2237.24
Lmax = -1963.03
Replica 19
**********************
size = 102
iter = 18
best_iter = 12
L = -2079.16
Lmax = -1963.03
Replica 20
**********************
size = 102
iter = 19
best_iter = 12
L = -2130.74
Lmax = -1963.03
Loptimal = -1963.03
resuming the rest of the calculations
iter = 10
noise = 0.397699;    iter= 10/20; L = -2093.62
i = 10
mult = 1.22615
min = 125.289
max = 153.623
iter = 11
noise = 0.358929;    iter= 11/20; L = -2385.85
i = 11
mult = 1.22615
min = 153.623
max = 188.364
iter = 12
noise = 0.320159;    iter= 12/20; L = -3076.29
i = 12
mult = 1.22615
min = 188.364
max = 230.962
iter = 13
noise = 0.281389;    iter= 13/20; L = -3892.02
i = 13
mult = 1.22615
min = 230.962
max = 283.194
iter = 14
noise = 0.242619;    iter= 14/20; L = -4812.41
i = 14
mult = 1.22615
min = 283.194
max = 347.237
iter = 15
noise = 0.20385;    iter= 15/20; L = -6645.58
i = 15
mult = 1.22615
min = 347.237
max = 425.764
iter = 16
noise = 0.16508;    iter= 16/20; L = -7900.63
i = 16
mult = 1.22615
min = 425.764
max = 522.049
iter = 17
noise = 0.12631;    iter= 17/20; L = -11529.8
i = 17
mult = 1.22615
min = 522.049
max = 640.109
iter = 18
noise = 0.0875398;    iter= 18/20; L = -12424.5
i = 18
mult = 1.22615
min = 640.109
max = 784.868
iter = 19
noise = 0.0487699;    iter= 19/20; L = -12402.4
i = 19
mult = 1.22615
min = 784.868
max = 962.364
iter = 20
noise = 0.01;    iter= 20/20; L = -13374.4
i = 20
mult = 1.22615
min = 962.364
max = 1180
iter = 21
noise = -0.0287699;    iter= 21/20; L = -18775.4
i = 21
mult = 1.22615
min = 1180
max = 1446.85
Control sum = 1180
E. Infer remaining node coordinates
embed remaining nodes
embed list compiled
embed list size = 0
output resulting angles
output filename = results/mammal//kvk-coordinates.txt
E2. Massage All
error value = 0.0001
core size = 1180
start core massaging...
max_error = 2.86163
iter = 0; L = -16342
max_error = 0.80848
iter = 1; L = -17859.6
max_error = 0.80848
iter = 2; L = -17397.4
max_error = 0.80848
iter = 3; L = -17574.8
max_error = 0.80848
iter = 4; L = -17272.9
max_error = 0.80848
iter = 5; L = -17425.3
max_error = 0.80848
iter = 6; L = -17258.4
max_error = 0.80848
iter = 7; L = -17502.8
max_error = 0.853395
iter = 8; L = -inf
max_error = 1.37242
iter = 9; L = -19042.3
max_error = 1.36244
iter = 10; L = -17579.1
max_error = 0.80848
iter = 11; L = -17769
max_error = 0.80848
iter = 12; L = -16540.9
max_error = 0.88833
iter = 13; L = -17520.2
max_error = 0.80848
iter = 14; L = -17433.8
max_error = 0.80848
iter = 15; L = -18142.7
max_error = 0.80848
iter = 16; L = -17267.1
max_error = 0.80848
iter = 17; L = -17145.3
max_error = 0.80848
iter = 18; L = -17078.2
max_error = 0.80848
iter = 19; L = -17395.9
Add small noise to angular coordinates
output coordinates
