## Contents by folder:

----

### /AGM-TE

Installable python package implementing the novel machine learning method for transfer entropy estimation discussed in the main text

-----

### /TE_datasim

Installable python package implementing the synthetic data generators with analytically tractable transfer entropies. Used in the generation of comparative benchmarking data

----

### /Sec_3_benchmarks

All code required to recreate the comparison of the four alternative transfer entropy estimation methods seen in section 3. Re-running benchmarks is expected to take multiple days, but raw results, and plot generating code is also provided. 

-----

### /Sec_4_brain_connectivity

All code required to recreate the analysis of effective connectivity presented in section 4 of the text. Re-running experiments is expected to take approximately a single day, but raw results are also provided. 



-----
