Data Associated with "Can deep learning models for drug sensitivity prediction truly transfer knowledge from bulk to single cell data?"

Michael Bohl, Marina Esteban-Medina, Kerstin Lenhof

Published: 09 Dec 2025, Last Modified: 04 May 2026ZenodoEveryoneRevisionsCC BY-SA 4.0
Abstract: This Zenodo record contains all data necessary to reproduce the benchmark results described in the following publication: M. Bohl, M. Esteban-Medina, and K. Lenhof, Can deep learning models for drug sensitivity prediction truly transfer knowledge from bulk to single-cell data? bioRxiv (2025). Processed GDSC and single-cell RNA-Seq datasets are in processed.zip scATD model weights are in checkpoint_fold1_epoch_30.pth Full hyperparameter tuning logs/results are in hyperparameter_tuning_results.csv The first version of the source code (without model weights) is in code.zip. In case it gets updated in the future, check the latest version at https://github.com/cbg-ethz/SC-Bulk-Domain-Adaptation/