Scalable Bayesian Optimization Accelerates Process Optimization of Penicillin ProductionDownload PDF

24 Sept 2021, 16:11 (edited 29 Nov 2021)NeurIPS-AI4Science PosterReaders: Everyone
  • Keywords: Bayesian Optimization, High-dimensional, Pharmaceutical Manufacturing
  • TL;DR: High-dimensional Bayesian Optimization Accelerates Pharmaceutical Manufacturing Process
  • Abstract: While Bayesian Optimization (BO) has emerged as sample-efficient optimization method for accelerating drug discovery, it has rarely been applied to the process optimization of pharmaceutical manufacturing, which traditionally has relied on human-intuition, along with trial-and-error and slow cycles of learning. The combinatorial and hierarchical complexity of such process control also introduce challenges related to high-dimensional design spaces and requirements of larger scale observations, in which BO has typically scaled poorly. In this paper, we use penicillin production as a case study to demonstrate the efficacy of BO in accelerating the optimization of typical pharmaceutical manufacturing processes. To overcome the challenges raised by high dimensionality, we apply a trust region BO approach (TuRBO) for global optimization of penicillin yield and empirically show that it outperforms other BO and random baselines. We also extend the study by leveraging BO in the context of multi-objective optimization, allowing us to further evaluate the trade-offs between penicillin yield, production time, and CO$_2$ emission as by-product. Through quantifying the performance of BO across high-dimensional and multi-objective drug production optimization processes, we hope to popularize application of BO in this field, and encourage closer collaboration between machine learning and broader scientific communities.
  • Track: Original Research Track
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