TRUST-REGION SALIENCY-GUIDED LOCAL SEARCH FOR INTERPRETABLE SEQUENCE DESIGN AT FIXED EDIT BUDGETS

Published: 02 Mar 2026, Last Modified: 08 May 2026MLGenX 2026 TinypapertrackEveryoneRevisionsBibTeXCC BY 4.0
Abstract: Discrete sequence design under a fixed edit budget can match target model out-puts, but often returns dispersed, multi-cluster edit sets that are hard to interpret. We present SAGE-TRSwap, a saliency-guided trust-region local search that optimizes the same prediction loss as a Ledidi-style relaxation+pruning baseline (Schreiber et al., 2021) while biasing proposals toward high-attribution regions and enabling budget-preserving SWAP refinements. Across 12 regulatory targets/tracks and 5 random starts per target (60 runs per budget), SAGE-TRSwap reduces edit span and cluster count at all budgets (e.g., mean span 852 → 100 and clusters 6.0 →1.2 at B = 40) while maintaining or improving absolute error under the budget constraint.
Submission Number: 65
Loading