Aaron W Kollasch

Researcher, Basecamp Research

Joined

September 2022

Names

Aaron W Kollasch (Preferred)

Emails

****@g.harvard.edu (Confirmed)

****@gmail.com (Confirmed)

****@basecamp-research.com (Confirmed)

Personal Links

Google Scholar

ORCID

Career & Education History

Researcher

Basecamp Research (basecamp-research.com)

2025 – Present

Postdoc

Systems Biology, Harvard University (harvard.edu)

2024 – 2025

PhD student

Systems Biology, Harvard University (harvard.edu)

2017 – 2023

Undergrad student

Northwestern University (northwestern.edu)

2013 – 2017

Advisors, Relations & Conflicts

PhD Advisor

Debora Marks

2017 – 2025

Expertise

deep learning

Present

protein design

Present

Publications

LLM-Assisted versus Agentic Approaches to De Novo Minibinder Design for a KRAS G12D Neoantigen
Yilan Wang, Aaron W Kollasch
- GenBio 2026 Poster
- Readers: Everyone
Scaling Laws and Architectural Frontiers in Metagenomic Foundation Models
Geraldene Munsamy, Gavin Ayres, Jérémie DONA, Carla Greco, Daniel Anderson, Srijani Sridhar, William Chow, Aaron W Kollasch, Robert J. Pecoraro, Tanggis Bohnuud, Keith Kam, Gus Minto-Cowcher, Marcus H Y Leung, Hassan Sirelkhatim, John St. John, Ali Taghibakhshi, Tyler C. Shimko, Jared Wilber, Timur Rvachov, Saee Gopal Paliwal et al. (5 additional authors not shown)
- Gen² 2026 Poster
- Readers: Everyone
Few-shot Protein Fitness Prediction via In-context Learning and Test-time Training
Felix Teufel, Aaron W Kollasch, Yining Huang, Ole Winther, Kevin K Yang, Pascal Notin, Debora Susan Marks
- NeurIPS2025-AI4Science Poster
- Readers: Everyone
RNAGym: Benchmarks for RNA Fitness and Structure Prediction
Rohit Arora, Murphy Angelo, Christian Andrew Choe, Aaron W Kollasch, Fiona Qu, Courtney A. Shearer, Ruben Weitzman, Artem Gazizov, Sarah Gurev, Erik Xie, Debora Susan Marks, Pascal Notin
- MLGenX 2025
- Readers: Everyone
RNAGym: Benchmarks for RNA Fitness and Structure Prediction
Rohit Arora, Murphy Angelo, Christian Andrew Choe, Aaron W Kollasch, Fiona Qu, Courtney A. Shearer, Ruben Weitzman, Artem Gazizov, Sarah Gurev, Erik Xie, Debora Susan Marks, Pascal Notin
- ICLR 2025 AI4NA Poster
- Readers: Everyone
RNAGym: Benchmarks for RNA Fitness and Structure Prediction
Rohit Arora, Murphy Angelo, Christian Andrew Choe, Aaron W Kollasch, Fiona Qu, Courtney A. Shearer, Ruben Weitzman, Artem Gazizov, Sarah Gurev, Erik Xie, Debora Susan Marks, Pascal Notin
- GEM
- Readers: Everyone
Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders
Rose Orenbuch, Courtney A. Shearer, Aaron W Kollasch, Aviv Spinner, Thomas Hopf, Dinko Franceschi, Mafalda Dias, Jonathan Frazer, Debora Susan Marks
- archive
- Readers: Everyone
How well do generative protein models generate?
Han Spinner, Aaron W Kollasch, Debora Susan Marks
- GEM Poster
- Readers: Everyone
Combining Structure and Sequence for Superior Fitness Prediction
Steffanie Paul, Aaron Kollasch, Pascal Notin, Debora Marks
- GenBio@NeurIPS2023 Poster
- Readers: Everyone
ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design
Pascal Notin, Aaron W Kollasch, Daniel Ritter, Lood Van Niekerk, Steffan Paul, Han Spinner, Nathan J Rollins, Ada Shaw, Ruben Weitzman, Jonathan Frazer, Mafalda Dias, Dinko Franceschi, Rose Orenbuch, Yarin Gal, Debora Susan Marks
- NeurIPS 2023 Datasets and Benchmarks Poster
- Readers: Everyone

View all 11 publications

Co-Authors

View all 52 co-authors