Allan Dos Santos Costa

Joined

May 2021

Names

Allan Dos Santos Costa (Preferred)

Emails

****@mit.edu (Confirmed)

Personal Links

Homepage

Google Scholar

Career & Education History

PhD student

Massachusetts Institute of Technology (mit.edu)

2022 – 2025

MS student

Massachusetts Institute of Technology (mit.edu)

2019 – 2021

Undergrad student

Massachusetts Institute of Technology (mit.edu)

2015 – 2019

Advisors, Relations & Conflicts

PhD Advisor

Joseph Jacobson

2019 – 2021

Expertise

No areas of expertise listed

Publications

Accelerating Protein Molecular Dynamics Simulation with DeepJump
Allan Dos Santos Costa, Manvitha Ponnapati, Dana Rubin, Tess Smidt, JOSEPH JACOBSON
- GEM 2026
- Readers: Everyone
Accelerating Protein Molecular Dynamics Simulation with DeepJump
Allan Dos Santos Costa, Manvitha Ponnapati, Dana Rubin, Tess Smidt, JOSEPH JACOBSON
- NeurIPS2025-AI4Science Poster
- Readers: Everyone
RiboGen: RNA Sequence and Structure Co-Generation with Equivariant Multiflow
Dana Rubin, Allan Dos Santos Costa, Manvitha Ponnapati, JOSEPH JACOBSON
- ICLR 2025 AI4NA Oral
- Readers: Everyone
EquiJump: Protein Dynamics Simulation via SO(3)-Equivariant Stochastic Interpolants
Allan Dos Santos Costa, Ilan Mitnikov, Franco Pellegrini, Ameya Daigavane, Mario Geiger, Zhonglin Cao, Karsten Kreis, Tess Smidt, Emine Kucukbenli, JOSEPH JACOBSON
- GEM
- Readers: Everyone
Efficient Molecular Conformer Generation with SO(3) Averaged Flow-Matching and Reflow
Zhonglin Cao, Mario Geiger, Allan Dos Santos Costa, Danny Reidenbach, Karsten Kreis, Tomas Geffner, Franco Pellegrini, Guoqing Zhou, Emine Kucukbenli
- ICLR 2025 DeLTa Workshop Poster
- Readers: Everyone
Efficient Molecular Conformer Generation with SO(3) Averaged Flow-Matching and Reflow
Zhonglin Cao, Mario Geiger, Allan Dos Santos Costa, Danny Reidenbach, Karsten Kreis, Tomas Geffner, Franco Pellegrini, Guoqing Zhou, Emine Kucukbenli
- GEM
- Readers: Everyone
Efficient Molecular Conformer Generation with SO(3)-Averaged Flow Matching and Reflow
Zhonglin Cao, Mario Geiger, Allan Dos Santos Costa, Danny Reidenbach, Karsten Kreis, Tomas Geffner, Franco Pellegrini, Guoqing Zhou, Emine Kucukbenli
- ICML 2025 poster
- Readers: Everyone
Efficient molecular conformer generation with SO(3) averaged flow-matching and reflow
Zhonglin Cao, Mario Geiger, Allan Dos Santos Costa, Danny Reidenbach, Karsten Kreis, Tomas Geffner, Franco Pellegrini, Guoqing Zhou, Emine Kucukbenli
- Submitted to ICLR 2025
- Readers: Everyone
EquiJump: Protein Dynamics Simulation via SO(3)-Equivariant Stochastic Interpolants
Allan Dos Santos Costa, Ilan Mitnikov, Franco Pellegrini, Ameya Daigavane, Mario Geiger, Zhonglin Cao, Karsten Kreis, Tess Smidt, Emine Kucukbenli, JOSEPH JACOBSON
- Submitted to ICLR 2025
- Readers: Everyone
Ophiuchus: Scalable Modeling of Protein Structures through Hierarchical Coarse-graining SO(3)-Equivariant Autoencoders
Allan Dos Santos Costa, Ilan Mitnikov, Mario Geiger, Manvitha Ponnapati, Tess Smidt, JOSEPH JACOBSON
- GEM Poster
- Readers: Everyone

View all 11 publications

Allan Dos Santos Costa

Names

Emails

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Career & Education History

Advisors, Relations & Conflicts

Expertise

Publications

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