Andrew S. Warren

Assistant Professor, Biocomplexity Institute, University of Virginia, Charlottesville

Joined

August 2024

Names

Andrew S. Warren (Preferred)

Emails

****@virginia.edu (Confirmed)

Personal Links

Career & Education History

Assistant Professor

Biocomplexity Institute, University of Virginia, Charlottesville (virginia.edu)

2018 – Present

Advisors, Relations & Conflicts

PhD Advisor

Lenwood Heath

2011 – 2016

PhD Advisor

Joao Carlos Setubal

2005 – 2011

Expertise

Phylodynamics

2014 – Present

Graph Theory

2008 – Present

Computational Biology

2006 – Present

Publications

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Robert D. Olson, Rida Assaf, Thomas S. Brettin, Neal Conrad, Clark Cucinell, James J. Davis, Donald M. Dempsey, Allan Dickerman, Emily M. Dietrich, Ronald W. Kenyon, Mehmet Kuscuoglu, Elliot J. Lefkowitz, Jian Lu, Dustin Machi, Catherine Macken, Chunhong Mao, Anna Maria Niewiadomska, Marcus Nguyen, Gary J. Olsen, Jamie C. Overbeek et al. (20 additional authors not shown)
- Nucleic Acids Res. 2023
- Readers: Everyone
Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support
Parantapa Bhattacharya, Jiangzhuo Chen, Stefan Hoops, Dustin Machi, Bryan L. Lewis, Srinivasan Venkatramanan, Mandy L. Wilson, Brian Klahn, Aniruddha Adiga, Benjamin Hurt, Joseph Outten, Abhijin Adiga, Andrew S. Warren, Young Yun Baek, Przemyslaw J. Porebski, Achla Marathe, Dawen Xie, Samarth Swarup, Anil Vullikanti, Henning S. Mortveit et al. (3 additional authors not shown)
- Published: 01 Jan 2023, Last Modified: 12 May 2023
- Int. J. High Perform. Comput. Appl. 2023
- Readers: Everyone
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes
Margo VanOeffelen, Marcus Nguyen, Derya Aytan-Aktug, Thomas S. Brettin, Emily M. Dietrich, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Robert Olson, Gordon D. Pusch, Maulik Shukla, Rick Stevens, Veronika Vonstein, Andrew S. Warren, Alice R. Wattam, Hyun Seung Yoo, James J. Davis
- Briefings Bioinform. 2021
- Readers: Everyone
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
James J. Davis, Alice R. Wattam, Ramy K. Aziz, Thomas S. Brettin, Ralph Butler, Rory Butler, Philippe Chlenski, Neal Conrad, Allan Dickerman, Emily M. Dietrich, Joseph L. Gabbard, Svetlana Gerdes, Andrew Guard, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Marcus Nguyen, Eric K. Nordberg, Gary J. Olsen et al. (14 additional authors not shown)
- Published: 01 Jan 2020, Last Modified: 12 May 2023
- Nucleic Acids Res. 2020
- Readers: Everyone
PATRIC as a unique resource for studying antimicrobial resistance
Dionysios A. Antonopoulos, Rida Assaf, Ramy Karam Aziz, Thomas S. Brettin, Christopher Bun, Neal Conrad, James J. Davis, Emily M. Dietrich, Terry Disz, Svetlana Gerdes, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch et al. (9 additional authors not shown)
- Published: 01 Jan 2019, Last Modified: 12 May 2023
- Briefings Bioinform. 2019
- Readers: Everyone
Methods for Analysis of Prokaryotic Genome Architecture
Andrew S. Warren
- undefined 2017
- Readers: Everyone
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
Alice R. Wattam, James J. Davis, Rida Assaf, Sébastien Boisvert, Thomas S. Brettin, Christopher Bun, Neal Conrad, Emily M. Dietrich, Terry Disz, Joseph L. Gabbard, Svetlana Gerdes, Christopher S. Henry, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Eric K. Nordberg, Gary J. Olsen, Daniel E. Murphy-Olson, Robert Olson, Ross A. Overbeek et al. (8 additional authors not shown)
- Published: 01 Jan 2017, Last Modified: 12 May 2023
- Nucleic Acids Res. 2017
- Readers: Everyone
RNA-Rocket: an RNA-Seq analysis resource for infectious disease research
Andrew S. Warren, Cristina Aurrecoechea, Brian P. Brunk, Prerak Desai, Scott J. Emrich, Gloria I. Giraldo-Calderón, Omar S. Harb, Deborah Hix, Daniel Lawson, Dustin Machi, Chunhong Mao, Michael McClelland, Eric K. Nordberg, Maulik Shukla, Leslie B. Vosshall, Alice R. Wattam, Rebecca Will, Hyun Seung Yoo, Bruno W. S. Sobral
- Bioinform. 2015
- Readers: Everyone
Using Entropy Estimates for DAG-Based Ontologies
Andrew S. Warren, João C. Setubal
- CoRR 2014
- Readers: Everyone
PATRIC, the bacterial bioinformatics database and analysis resource
Alice R. Wattam, David Abraham, Oral Dalay, Terry Disz, Timothy Driscoll, Joseph L. Gabbard, Joseph J. Gillespie, Roger Gough, Deborah Hix, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Eric K. Nordberg, Robert Olson, Ross A. Overbeek, Gordon D. Pusch, Maulik Shukla, Julie Schulman, Rick L. Stevens, Daniel E. Sullivan et al. (8 additional authors not shown)
- Nucleic Acids Res. 2014
- Readers: Everyone

View all 13 publications

Co-Authors

View all 117 co-authors