Anne-Florence Bitbol

Assistant Professor, EPFL - EPF Lausanne

Joined

February 2024

Names

Anne-Florence Bitbol (Preferred)

Emails

****@epfl.ch (Confirmed)

Personal Links

Homepage

Career & Education History

Assistant Professor

EPFL - EPF Lausanne (epfl.ch)

2020 – Present

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

ProteomeLM: A Proteome-Scale Language Model Enables Accurate and Rapid Prediction of Protein-Protein Interactions and Gene Essentiality Across Taxa
Cyril Malbranke, Gionata Paolo Zalaffi, Anne-Florence Bitbol
- GenBio 2026 Poster
- Readers: Everyone
Predicting host-pathogen interactions using a proteome-scale language model
Cyril Malbranke, Cecilia Fruet, Anne-Florence Bitbol
- ICML 2026 FM4LS Workshop Poster
- Readers: Everyone
ProteomeLM: A Proteome-Scale Language Model Enables Accurate and Rapid Prediction of Protein-Protein Interactions and Gene Essentiality Across Taxa
Cyril Malbranke, Gionata Paolo Zalaffi, Anne-Florence Bitbol
- ICML 2026 FM4LS Workshop Poster
- Readers: Everyone
RAG-ESM: Improving pretrained protein language models via sequence retrieval
Damiano Sgarbossa, Anne-Florence Bitbol
- MLGenX 2025 Spotlight
- Readers: Everyone
ProtMamba: a homology-aware but alignment-free protein state space model
Damiano Sgarbossa, Cyril Malbranke, Anne-Florence Bitbol
- Submitted to ICLR 2025
- Readers: Everyone
ProtMamba: a homology-aware but alignment-free protein state space model
Damiano Sgarbossa, Cyril Malbranke, Anne-Florence Bitbol
- AccMLBio Spotlight
- Readers: Everyone
DiffPaSS – Differentiable and scalable pairing of biological sequences using soft scores
Umberto Lupo, Damiano Sgarbossa, Martina Milighetti, Anne-Florence Bitbol
- GEM Poster
- Readers: Everyone
Pairing interacting protein sequences using masked language modeling
Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol
- MLGenX 2024 Spotlight
- Readers: Everyone
A proteome-scale masked language model for fast protein-protein interaction prediction
Cyril Malbranke, Anne-Florence Bitbol
- GEM Poster
- Readers: Everyone
Pairing interacting protein sequences using masked language modeling
Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol
- GEM Poster
- Readers: Everyone