Anton Bushuiev

PhD student, Czech Technical University in Prague

Joined

September 2023

Names

Anton Bushuiev (Preferred)

Emails

****@cvut.cz (Confirmed)

Personal Links

Google Scholar

Career & Education History

PhD student

Czech Technical University in Prague (cvut.cz)

2023 – 2027

Advisors, Relations & Conflicts

PhD Advisor

Josef Sivic

2023 – Present

Expertise

machine learning

computational biology

2023 – 2027

Publications

One protein is all you need
Anton Bushuiev, Roman Bushuiev, Olga Pimenova, Nikola Zadorozhny, Raman Samusevich, Elisabet Manaskova, Rachel Seongeun Kim, Hannes Stark, Jiri Sedlar, Martin Steinegger, Tomas Pluskal, Josef Sivic
- ICLR 2026 Poster
- Readers: Everyone
Emergence of molecular structures from repository-scale self-supervised learning on tandem mass spectra
Roman Bushuiev, Anton Bushuiev, Raman Samusevich, Corinna Brungs, Josef Sivic, Tomas Pluskal
- ChemRxiv
- Readers: Everyone
Training on test proteins improves fitness, structure, and function prediction
Anton Bushuiev, Roman Bushuiev, Nikola Zadorozhny, Raman Samusevich, Hannes Stark, Jiri Sedlar, Tomas Pluskal, Josef Sivic
- Submitted to ICLR 2025
- Readers: Everyone
MassSpecGym: A benchmark for the discovery and identification of molecules
Roman Bushuiev, Anton Bushuiev, Niek F. de Jonge, Adamo Young, Fleming Kretschmer, Raman Samusevich, Janne Heirman, Fei Wang, Luke Zhang, Kai Dührkop, Marcus Ludwig, Nils A. Haupt, Apurva Kalia, Corinna Brungs, Robin Schmid, Russell Greiner, BO WANG, David Wishart, Liping Liu, Juho Rousu et al. (10 additional authors not shown)
- NeurIPS 2024 Track Datasets and Benchmarks Spotlight
- Readers: Everyone
Accurate predictions of enzymatic biochemistry as an enabler for generation of de-novo sequences
Raman Samusevich, Petr Kouba, Roman Bushuiev, Anton Bushuiev, Josef Sivic, Tomas Pluskal
- GEM Poster
- Readers: Everyone
Revealing data leakage in protein interaction benchmarks
Anton Bushuiev, Roman Bushuiev, Jiri Sedlar, Tomas Pluskal, Jiri Damborsky, Stanislav Mazurenko, Josef Sivic
- GEM Poster
- Readers: Everyone
Machine Learning-Guided Protein Engineering
Petr Kouba, Pavel Kohout, Faraneh Haddadi, Anton Bushuiev, Raman Samusevich, Jiri Sedlar, Jiri Damborsky, Tomas Pluskal, Josef Sivic, Stanislav Mazurenko
- ACS Catalysis 2023, 13, 21, 13863–13895
- Readers: Everyone
Learning to design protein-protein interactions with enhanced generalization
Anton Bushuiev, Roman Bushuiev, Petr Kouba, Anatolii Filkin, Marketa Gabrielova, Michal Gabriel, Jiri Sedlar, Tomas Pluskal, Jiri Damborsky, Stanislav Mazurenko, Josef Sivic
- ICLR 2024 poster
- Readers: Everyone

Co-Authors

View all 44 co-authors