Artemy Bakulin

PhD student, Computer Science, Weizmann Institute of Science

Joined

April 2023

Names

Artemy Bakulin (Preferred)

Artemii Bakulin

Emails

****@gmail.com (Confirmed)

****@weizmann.ac.il (Confirmed)

Personal Links

Homepage

DBLP

Career & Education History

PhD student

Computer Science, Weizmann Institute of Science (weizmann.ac.il)

2024 – Present

Advisors, Relations & Conflicts

No relations added

Expertise

Bioinformatics

Present

Self-supervised learning

Present

LLM agents

Present

Publications

Cross-Modal Knowledge Distillation from Spatial Transcriptomics to Histology
Arbel Hizmi, Artemy Bakulin, Shai Bagon, Nir Yosef
- CVMI workshop at CVPR 2026
- Readers: Everyone
Learning Population-Level Representations with Joint Embedding Predictive Architectures
Artemy Bakulin, Nir Yosef
- Submitted to ICLR 2026
- Readers: Everyone
AI AGENT FOR DATA-DRIVEN HYPOTHESIS EXPLORATION IN SINGLE-CELL TRANSCRIPTOMICS
Artemy Bakulin, Pierre Boyeau, Nir Yosef
- MLGenX 2025 Spotlight
- Readers: Everyone
NOLAN: SELF-SUPERVISED FRAMEWORK FOR MAPPING CONTINUOUS TISSUE ORGANIZATION
Artemy Bakulin, Nathan Levy, Can Ergen, Jonas Maaskola, Nir Yosef
- MLGenX 2025
- Readers: Everyone
2DE: a probabilistic method for differential expression across niches in spatial transcriptomics data
Nathan Levy, Florian Ingelfinger, Artemy Bakulin, Giacomo Cinnirella, Pierre Boyeau, Can Ergen, Nir Yosef
- MLGenX 2025 TinyPapers
- Readers: Everyone
NOLAN: CONSTRUCTING GRAPH REPRESENTATION OF TISSUE STRUCTURE WITH SELF-SUPERVISED LEARNING
Artemy Bakulin, Nathan Levy, Can Ergen, Jonas Maaskola, Nir Yosef
- ICLR 2025 Workshop LMRL
- Readers: Everyone
2DE: a probabilistic method for differential expression across niches in spatial transcriptomics data
Nathan Levy, Florian Ingelfinger, Artemy Bakulin, Giacomo Cinnirella, Pierre Boyeau, Can Ergen, Nir Yosef
- ICLR 2025 Workshop LMRL
- Readers: Everyone
The CausalBench challenge: A machine learning contest for gene network inference from single-cell perturbation data
Mathieu Chevalley, Jacob Sackett-Sanders, Yusuf H. Roohani, Pascal Notin, Artemy Bakulin, Dariusz Brzezinski, Kaiwen Deng, Yuanfang Guan, Justin Hong, Michael Ibrahim, Wojciech Kotlowski, Marcin Kowiel, Panagiotis Misiakos, Achille Nazaret, Markus Püschel, Chris Wendler, Arash Mehrjou, Patrick Schwab
- CLeaR 2025
- Readers: Everyone
The CausalBench challenge: A machine learning contest for gene network inference from single-cell perturbation data
Mathieu Chevalley, Jacob Sackett-Sanders, Yusuf H Roohani, Pascal Notin, Artemy Bakulin, Dariusz Brzezinski, Kaiwen Deng, Yuanfang Guan, Justin Hong, Michael Ibrahim, Wojciech Kotlowski, Marcin Kowiel, Panagiotis Misiakos, Achille Nazaret, Markus Püschel, Chris Wendler, Arash Mehrjou, Patrick Schwab
- CLeaR 2025 Poster
- Readers: Everyone
pyPAGE: A framework for Addressing biases in gene-set enrichment analysis - A case study on Alzheimer's disease
Artemy Bakulin, Noam B. Teyssier, Martin Kampmann, Matvei Khoroshkin, Hani Goodarzi
- PLoS Comput. Biol. 2024
- Readers: Everyone

View all 12 publications

Co-Authors

View all 32 co-authors