Arvind Ramanathan

Researcher, Argonne National Laboratory

Joined

May 2021

Names

Arvind Ramanathan (Preferred)

Emails

****@anl.gov (Confirmed)

Personal Links

Homepage

Career & Education History

Researcher

Argonne National Laboratory (anl.gov)

2019 – Present

Researcher

Oak Ridge National Laboratory (ornl.gov)

2010 – 2019

PhD student

Carnegie Mellon University (cmu.edu)

2005 – 2010

Advisors, Relations & Conflicts

No relations added

Expertise

Computational Biology

Present

Machine learning

Present

Language models

Present

Publications

Antibody design using preference optimization and structural inference
Archit Vasan, Gautham Dharuman, Ozan Gokdemir, Heng Ma, Arvind Ramanathan
- GEM
- Readers: Everyone
AdaParse: An Adaptive Parallel PDF Parsing and Resource Scaling Engine
Carlo Siebenschuh, Kyle Hippe, Ozan Gokdemir, Alexander Brace, Arham Mushtaq Khan, Khalid Hossain, Yadu Babuji, Nicholas Chia, Venkatram Vishwanath, Arvind Ramanathan, Rick L. Stevens, Ian Foster, Robert Underwood
- MLSys 2025
- Readers: Everyone
Understanding Protein-DNA Interactions by Paying Attention to Protein and Genomics Foundation Models
Dhruva Rajwade, Erica Wang, Aryan Satpathy, Alexander Brace, Hongyu Guo, Arvind Ramanathan, Shengchao Liu, Anima Anandkumar
- AIDrugX Poster
- Readers: Everyone
Understanding Protein-DNA Interactions by Paying Attention to Protein and Genomics Foundation Models
Dhruva Rajwade, Erica Wang, Aryan Satpathy, Alexander Brace, Hongyu Guo, Arvind Ramanathan, Shengchao Liu, Anima Anandkumar
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Equivariant Graph Neural Operator for Modeling 3D Dynamics
Minkai Xu, Jiaqi Han, Aaron Lou, Jean Kossaifi, Arvind Ramanathan, Kamyar Azizzadenesheli, Jure Leskovec, Stefano Ermon, Anima Anandkumar
- ICML 2024 Poster
- Readers: Everyone
DeepSpeed4Science Initiative: Enabling Large-Scale Scientific Discovery through Sophisticated AI System Technologies
Shuaiwen Leon Song, Bonnie Kruft, Minjia Zhang, Conglong Li, Shiyang Chen, Chengming Zhang, Masahiro Tanaka, Xiaoxia Wu, Mohammed AlQuraishi, Gustaf Ahdritz, Christina Floristean, Rick L. Stevens, Venkatram Vishwanath, Arvind Ramanathan, Sam Foreman, Kyle Hippe, Prasanna Balaprakash, Yuxiong He
- NeurIPS2023-AI4Science Poster
- Readers: Everyone
Integrating AI, automation and multiscale simulations for end-to-end design of phase-separating proteins
Arvind Ramanathan
- Published: 22 Nov 2022, Last Modified: 05 May 2023
- AI4Mat 2022 Poster
- Readers: Everyone
Deep Surrogate Docking: Accelerating Automated Drug Discovery with Graph Neural Networks
Ryien Hosseini, Filippo Simini, Austin Clyde, Arvind Ramanathan
- Published: 21 Oct 2022, Last Modified: 08 Feb 2026
- AI4Science Poster
- Readers: Everyone
Protein-Ligand Docking Surrogate Models: A SARS-CoV-2 Benchmark for Deep Learning Accelerated Virtual Screening
Austin Clyde, Thomas Brettin, Alexander Partin, Hyunseung Yoo, Yadu Babuji, Ben Blaiszik, Andre Merzky, Matteo Turilli, Shantenu Jhah, Arvind Ramanathan, Rick Stevens
- 08 Jun 2021 (modified: 26 May 2025)
- Submitted to NeurIPS 2021 Datasets and Benchmarks Track (Round 1)
- Readers: Everyone

Co-Authors

View all 53 co-authors