Benjamin Raphael

Full Professor, Princeton University

Joined

July 2019

Names

Benjamin Raphael

Emails

****@princeton.edu (Confirmed)

Personal Links

Career & Education History

Full Professor

Princeton University (princeton.edu)

2016 – Present

Associate Professor

Brown University (brown.edu)

2011 – 2016

Assistant Professor

Brown University (brown.edu)

2006 – 2011

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

Transport Clustering: Solving Low-Rank Optimal Transport via Clustering
Henri Schmidt, Peter Halmos, Benjamin Raphael
- Submitted to ICLR 2026
- Readers: Everyone
Hierarchical Refinement: Optimal Transport to Infinity and Beyond
Peter Halmos, Julian Gold, Xinhao Liu, Benjamin Raphael
- ICML 2025 oral
- Readers: Everyone
Mapping the topography of spatial gene expression with interpretable deep learning
Uthsav Chitra, Brian Arnold, Hirak Sarkar, Cong Ma, Sereno Lopez-Darwin, Kohei Sanno, Benjamin Raphael
- RECOMB 2024
- Readers: Everyone
Low-Rank Optimal Transport through Factor Relaxation with Latent Coupling
Peter Halmos, Xinhao Liu, Julian Gold, Benjamin Raphael
- NeurIPS 2024 poster
- Readers: Everyone
Partial alignment of multislice spatially resolved transcriptomics data
Xinhao Liu, Ron Zeira, Benjamin Raphael
- Genome Research
- Readers: Everyone
Representation Learning for Spatial Multimodal Data Integration with Optimal Transport
Xinhao Liu, Benjamin Raphael
- NeurIPS2023-AI4Science Poster
- Readers: Everyone
Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics
Uthsav Chitra, Cong Ma, Shirley Zhang, Benjamin Raphael
- 27 Feb 2022
- OpenReview Archive Direct Upload
- Readers: Everyone
NetMix2: Unifying network propagation and altered subnetworks
Uthsav Chitra, Tae Yoon Park, Benjamin Raphael
- 27 Feb 2022
- OpenReview Archive Direct Upload
- Readers: Everyone

Co-Authors