Bongjin Koo

Scientist, New York Structural Biology Center

Postdoc, University of California, Santa Barbara

Joined

May 2021

Names

Bongjin Koo (Preferred)

Emails

****@ucl.ac.uk (Confirmed)

****@icloud.com (Confirmed)

****@ucsb.edu (Confirmed)

****@nysbc.org (Confirmed)

Personal Links

Google Scholar

DBLP

Career & Education History

Scientist

New York Structural Biology Center (nysbc.org)

2024 – Present

Postdoc

University of California, Santa Barbara (ucsb.edu)

2022 – Present

Postdoc

University College London (ucl.ac.uk)

2018 – 2022

Advisors, Relations & Conflicts

Coworker

Tristan Bepler

2024 – Present

Postdoc Advisor

Nina Miolane

2022 – 2024

Expertise

machine learning

deep learning

flow matching

diffusion models

Present

Publications

Learning to Predict Ensembles of Protein Conformations from Molecular Dynamics Simulation Trajectories
Bongjin Koo, Patrick Jiang, Soumya Dutta, I. Can Kazan, S. Banu Ozkan, Paul T Kim, Abhishek Singharoy, Tristan Bepler
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Automatic, global registration in laparoscopic liver surgery
Bongjin Koo, Maria R. Robu, Moustafa Allam, Micha Pfeiffer, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, Stefanie Speidel, David J. Hawkes, Danail Stoyanov, Matthew J. Clarkson
- 2022 (modified: 27 Nov 2022)
- Int. J. Comput. Assist. Radiol. Surg. 2022
- Readers: Everyone
Towards Multi-modal Self-supervised Video and Ultrasound Pose Estimation for Laparoscopic Liver Surgery
Nina Montaña Brown, João Ramalhinho, Bongjin Koo, Moustafa Allam, Brian R. Davidson, Kurinchi Gurusamy, Yipeng Hu, Matthew J. Clarkson
- 2022 (modified: 27 Nov 2022)
- ASMUS@MICCAI 2022
- Readers: Everyone
Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT
João Ramalhinho, Bongjin Koo, Nina Montaña Brown, Shaheer U. Saeed, Ester Bonmati, Kurinchi Gurusamy, Stephen P. Pereira, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson
- 2022 (modified: 27 Nov 2022)
- Int. J. Comput. Assist. Radiol. Surg. 2022
- Readers: Everyone
3D Shape Variational Autoencoder Latent Disentanglement via Mini-Batch Feature Swapping for Bodies and Faces
Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
- 2022 (modified: 27 Nov 2022)
- CVPR 2022
- Readers: Everyone
Heterogeneous reconstruction of deformable atomic models in Cryo-EM
Youssef Nashed, Ariana Peck, Julien N. P. Martel, Axel Levy, Bongjin Koo, Gordon Wetzstein, Nina Miolane, Daniel Ratner, Frédéric Poitevin
- 2022 (modified: 27 Nov 2022)
- CoRR 2022
- Readers: Everyone
3D Shape Variational Autoencoder Latent Disentanglement via Mini-Batch Feature Swapping for Bodies and Faces
Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
- 2021 (modified: 27 Nov 2022)
- CoRR 2021
- Readers: Everyone
SciKit-Surgery: compact libraries for surgical navigation
Stephen A. Thompson, Thomas Dowrick, Mian Ahmad, Goufang Xiao, Bongjin Koo, Ester Bonmati, Kim Kahl, Matthew J. Clarkson
- 2020 (modified: 27 Nov 2022)
- Int. J. Comput. Assist. Radiol. Surg. 2020
- Readers: Everyone
Intraoperative Liver Surface Completion with Graph Convolutional VAE
Simone Foti, Bongjin Koo, Thomas Dowrick, João Ramalhinho, Moustafa Allam, Brian R. Davidson, Danail Stoyanov, Matthew J. Clarkson
- 2020 (modified: 27 Nov 2022)
- UNSURE/GRAIL@MICCAI 2020
- Readers: Everyone
More Unlabelled Data or Label More Data? A Study on Semi-supervised Laparoscopic Image Segmentation
Yunguan Fu, Maria R. Robu, Bongjin Koo, Crispin Schneider, Stijn van Laarhoven, Danail Stoyanov, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu
- 2019 (modified: 27 Nov 2022)
- DART/MIL3ID@MICCAI 2019
- Readers: Everyone

View all 16 publications

Co-Authors

View all 51 co-authors