Bozhen Hu

Researcher, BioMap Research

Joined

May 2021

Names

Bozhen Hu (Preferred)

Emails

****@163.com (Confirmed)

****@westlake.edu.cn (Confirmed)

Personal Links

Career & Education History

Researcher

BioMap Research (biomap.com)

2025 – Present

PhD student

Engineering, Westlake University (westlake.edu.cn)

2021 – 2025

Advisors, Relations & Conflicts

PhD Advisor

Stan Z. Li

Present

Expertise

Graph Neural Network

Present

Protein Representation Learning

Present

Language Models

Present

Publications

PFMBench: Protein Foundation Model Benchmark
Zhangyang Gao, Hao Wang, Cheng Tan, Chenrui XU, Mengdi Liu, Bozhen Hu, Linlin Chao, Xiaoming Zhang, Stan Z. Li
- Submitted to ICLR 2026
- Readers: Everyone
ReNovo: Retrieval-Based \emph{De Novo} Mass Spectrometry Peptide Sequencing
Shaorong Chen, Jun Xia, Jingbo Zhou, Lecheng Zhang, Zhangyang Gao, Bozhen Hu, Cheng Tan, Wenjie Du, Stan Z. Li
- ICLR 2025 Poster
- Readers: Everyone
MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
Cheng Tan, Zhenxiao Cao, Zhangyang Gao, Lirong Wu, Siyuan Li, Yufei Huang, Jun Xia, Bozhen Hu, Stan Z. Li
- ICLR 2025 Poster
- Readers: Everyone
Beyond Homophily and Homogeneity Assumption: Relation-Based Frequency Adaptive Graph Neural Networks
Lirong Wu, Haitao Lin, Bozhen Hu, Cheng Tan, Zhangyang Gao, Zicheng Liu, Stan Z. Li
- IEEE Trans. Neural Networks Learn. Syst. 2024
- Readers: Everyone
FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational Learning
Sizhe Liu, Jun Xia, Lecheng Zhang, Yuchen Liu, Yue Liu, Wenjie Du, Zhangyang Gao, Bozhen Hu, Cheng Tan, hongxin xiang, Stan Z. Li
- NeurIPS 2024 Track Datasets and Benchmarks Poster
- Readers: Everyone
AdaNovo: Towards Robust \emph{De Novo} Peptide Sequencing in Proteomics against Data Biases
Jun Xia, Shaorong Chen, Jingbo Zhou, Xiaojun Shan, Wenjie Du, Zhangyang Gao, Cheng Tan, Bozhen Hu, Jiangbin Zheng, Stan Z. Li
- NeurIPS 2024 poster
- Readers: Everyone
ProtGO: Function-Guided Protein Modeling for Unified Representation Learning
Bozhen Hu, Cheng Tan, Yongjie Xu, Zhangyang Gao, Jun Xia, Lirong Wu, Stan Z. Li
- NeurIPS 2024 poster
- Readers: Everyone
Learning Complete Protein Representation by Dynamically Coupling of Sequence and Structure
Bozhen Hu, Cheng Tan, Jun Xia, Yue Liu, Lirong Wu, Jiangbin Zheng, Yongjie Xu, Yufei Huang, Stan Z. Li
- NeurIPS 2024 poster
- Readers: Everyone
A Graph is Worth $K$ Words: Euclideanizing Graph using Pure Transformer
Zhangyang Gao, Daize Dong, Cheng Tan, Jun Xia, Bozhen Hu, Stan Z. Li
- ICML 2024 Poster
- Readers: Everyone
A Graph is Worth K Words: Euclideanizing Graph using Pure Transformer
Zhangyang Gao, Daize Dong, Cheng Tan, Jun Xia, Bozhen Hu, Stan Z. Li
- ICML 2024
- Readers: Everyone

View all 37 publications

Co-Authors

View all 42 co-authors