David Baker

Full Professor, Biochemistry, University of Washington

Joined

July 2019

Names

David Baker

Emails

****@u.washington.edu (Confirmed)

Personal Links

Homepage

Career & Education History

Full Professor

Biochemistry , University of Washington (u.washington.edu)

Present

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

Improving Protein Sequence Design through Designability Preference Optimization
Fanglei Xue, Andrew Kubaney, Zhichun Guo, Joseph K. Min, Ge Liu, Yi Yang, David Baker
- ICLR 2026 Conference Withdrawn Submission
- Readers: Everyone
Hierarchical Protein Backbone Generation with Latent and Structure Diffusion
Jason Yim, Marouane Jaakik, Ge Liu, Jacob Gershon, Karsten Kreis, David Baker, Regina Barzilay, Tommi Jaakkola
- GEM
- Readers: Everyone
Integrating Generative and Experimental Platforms for Biomolecular Design
Cheng-Hao Liu, Jarrid Rector-Brooks, Soojung Yang, Sidney L Lisanza, Francesca-Zhoufan Li, Hannes Stark, Jacob Gershon, Lauren Hong, Pranam Chatterjee, Tommi Jaakkola, Regina Barzilay, David Baker, Frances H. Arnold, Yoshua Bengio
- ICLR 2025 Workshop Proposals
- Readers: Everyone
Hierarchical Protein Backbone Generation with Latent and Structure Diffusion
Jason Yim, Marouane Jaakik, Ge Liu, Jacob Gershon, Karsten Kreis, David Baker, Regina Barzilay, Tommi Jaakkola
- Submitted to ICLR 2025
- Readers: Everyone
Integrating Generative and Experimental Platforms or Biomolecular Design
Cheng-Hao Liu, Jarrid Rector-Brooks, Jason Yim, Soojung Yang, Sidney Lisanza, Francesca-Zhoufan Li, Pranam Chatterjee, Tommi Jaakkola, Regina Barzilay, David Baker, Frances H. Arnold, Yoshua Bengio
- ICLR 2024 Workshops
- Readers: Everyone
Diffusion Probabilistic Modeling of Protein Backbones in 3D for the motif-scaffolding problem
Brian L. Trippe, Jason Yim, Doug Tischer, David Baker, Tamara Broderick, Regina Barzilay, Tommi S. Jaakkola
- Published: 01 Feb 2023, Last Modified: 14 Jan 2026
- ICLR 2023 poster
- Readers: Everyone
Single Layers of Attention Suffice to Predict Protein Contacts
Nick Bhattacharya, Neil Thomas, Roshan Rao, Justas Dauparas, Peter K Koo, David Baker, Yun S. Song, Sergey Ovchinnikov
- Published: 25 Apr 2021, Last Modified: 05 May 2023
- EBM_WS@ICLR2021 Poster
- Readers: Everyone
Single Layers of Attention Suffice to Predict Protein Contacts
Nick Bhattacharya, Neil Thomas, Roshan Rao, Justas Daupras, Peter K Koo, David Baker, Yun S. Song, Sergey Ovchinnikov
- 28 Sept 2020 (modified: 05 May 2023)
- ICLR 2021 Conference Blind Submission
- Readers: Everyone

Co-Authors

View all 34 co-authors