David P Nickerson

Principal Researcher, Auckland Bioengineering Institute, University of Auckland

Joined

May 2024

Names

David P Nickerson (Preferred)

David Phillip Nickerson

David P. Nickerson

Emails

****@auckland.ac.nz (Confirmed)

Personal Links

Career & Education History

Principal Researcher

Auckland Bioengineering Institute, University of Auckland (auckland.ac.nz)

Present

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

CASBERT: BERT-based retrieval for compositely annotated biosimulation model entities
Yuda Munarko, Anand K. Rampadarath, David P. Nickerson
- Frontiers Bioinform. 2023
- Readers: Everyone
CellML 2.0.1
Michael Clerx, Michael T. Cooling, Jonathan Cooper, Alan Garny, Keri R. Moyle, David P. Nickerson, Poul M. F. Nielsen, Hugh Sorby
- J. Integr. Bioinform. 2023
- Readers: Everyone
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber
- J. Integr. Bioinform. 2023
- Readers: Everyone
PhysioMed: A Semantic Web based Framework for Linking Healthcare Information with Computational Physiology Models
Reza Kalbasi, David P. Nickerson, Koray Atalag
- BCB 2023
- Readers: Everyone
Vision for the 12 LABOURS Digital Twin Platform
Thiranja P. Babarenda Gamage, Ayah Elsayed, Chinchien Lin, Alan Wu, Yuan Feng, Jianwei Yu, Linkun Gao, Savindi Wijenayaka, Martyn P. Nash, Anthony J. Doyle, David P. Nickerson
- EMBC 2023
- Readers: Everyone
Building a search tool for compositely annotated entities using Transformer-based approach: Case study in Biosimulation Model Search Engine (BMSE)
Yuda Munarko, Anand K. Rampadarath, David P. Nickerson
- F1000Research 2023
- Readers: Everyone
Addressing
Anna Niarakis, Dagmar Waltemath, James A. Glazier, Falk Schreiber, Sarah M. Keating, David P. Nickerson, Claudine Chaouiya, Anne Siegel, Vincent Noël, Henning Hermjakob, Tomás Helikar, Sylvain Soliman, Laurence Calzone
- Briefings Bioinform. 2022
- Readers: Everyone
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout et al. (51 additional authors not shown)
- Published: 01 Jan 2022, Last Modified: 15 May 2023
- CoRR 2022
- Readers: Everyone
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout et al. (55 additional authors not shown)
- Published: 01 Jan 2022, Last Modified: 15 May 2023
- Nucleic Acids Res. 2022
- Readers: Everyone
The simulation experiment description markup language (SED-ML): language specification for level 1 version 4
Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König
- J. Integr. Bioinform. 2021
- Readers: Everyone

View all 47 publications

Co-Authors

View all 195 co-authors