Dokyoon Kim

Associate Professor, University of Pennsylvania, University of Pennsylvania

Joined

July 2023

Names

Dokyoon Kim (Preferred)

Emails

****@pennmedicine.upenn.edu (Confirmed)

Personal Links

Homepage

Google Scholar

Career & Education History

Associate Professor

University of Pennsylvania, University of Pennsylvania (upenn.edu)

2023 – Present

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

How do Large Language Models Learn New Domain Knowledge?
Joseph Lee, Yidi Huang, Dokyoon Kim, Shu Yang, Li Shen
- Submitted to ICLR 2026
- Readers: Everyone
Reference-free cell-type annotation with LLM agents
Yidi Huang, Ivan Cohen, Van Quynh-Thi Truong, Pedram B Bayat, Sameer A Bhatti, Luca Paruzzo, Mark M. Painter, Shirong Zheng, Derek Alan Oldridge, Joost Wagenaar, Allison R Greenplate, Dokyoon Kim
- MLGenX 2025 TinyPapers
- Readers: Everyone
Generalized Representation Learning for Multimodal Histology Imaging Data Through Vision-Language Modeling
Jacob S Leiby, Alexandro E Trevino, Aaron T Mayer, Zhenqin Wu, Dokyoon Kim, Zhi Huang
- ICLR 2025 Workshop LMRL
- Readers: Everyone
MAESTRO: Masked Encoding Set Transformer with Self-Distillation
Matthew Eric Lee, Jaesik Kim, Matei Ionita, Jonghyun Lee, Michelle L. McKeague, YONGHYUN NAM, Irene Khavin, Yidi Huang, Victoria Fang, Sokratis Apostolidis, Divij Mathew, Shwetank, Ajinkya Pattekar, Zahabia Rangwala, Amit Bar-Or, Benjamin A Fensterheim, Benjamin A. Abramoff, Rennie L. Rhee, Damian Maseda, Allison R Greenplate et al. (2 additional authors not shown)
- ICLR 2025 Poster
- Readers: Everyone
NetPRS: SNP interaction aware network-based polygenic risk score for Alzheimer’s disease
Sunghong Park, Dong-gi Lee, Juhyeon Kim, Doyoon Kim, Chang Hyung Hong, Sang Joon Son, Hyun Woong Roh, Kanghee Park, Dokyoon Kim, Hyunjung Shin, Hyun Goo Woo
- IEEE BHI'24
- Readers: Everyone
Immunology Meets Artificial Intelligence: Expanding Our Scientific Toolbox
Van Truong, Matthew Lee, Dokyoon Kim, John Wherry, Marylyn Ritchie
- NeurIPS2023-AI4Science Poster
- Readers: Everyone
Single-cell Masked Autoencoder: An Accurate and Interpretable Automated Immunophenotyper
Jaesik Kim, Matei Ionita, Matthew Eric Lee, Michelle McKeague, Ajinkya Pattekar, Mark Painter, Joost Wagenaar, Van Quynh-Thi Truong, Dylan Norton, Divij Mathew, Yonghyun Nam, Sokratis Apostolidis, Patryk Orzechowski, Sang-Hyuk Jung, Jakob Woerner, Yidi Huang, Nuala J. Meyer, Allison R. Greenplate, Dokyoon Kim, John Wherry
- NeurIPS2023-AI4Science Poster
- Readers: Everyone

Co-Authors

View all 57 co-authors

Dokyoon Kim

Names

Emails

Personal Links

Career & Education History

Advisors, Relations & Conflicts

Expertise

Publications

How do Large Language Models Learn New Domain Knowledge?

Reference-free cell-type annotation with LLM agents

Generalized Representation Learning for Multimodal Histology Imaging Data Through Vision-Language Modeling

MAESTRO: Masked Encoding Set Transformer with Self-Distillation

NetPRS: SNP interaction aware network-based polygenic risk score for Alzheimer’s disease

Immunology Meets Artificial Intelligence: Expanding Our Scientific Toolbox

Single-cell Masked Autoencoder: An Accurate and Interpretable Automated Immunophenotyper

Co-Authors