Dong Xu

Full Professor, University of Missouri

Joined

July 2019

Names

Dong Xu

Emails

****@missouri.edu (Confirmed)

Personal Links

Google Scholar

Career & Education History

Full Professor

University of Missouri (missouri.edu)

2007 – Present

Advisors, Relations & Conflicts

No relations added

Expertise

bioinformatics and computational biology

1991 – Present

Publications

Prot2Token: A Unified Framework for Protein Modeling via Next-Token Prediction
Mahdi Pourmirzaei, Farzaneh Esmaili, Salhuldin Alqarghuli, Mohammadreza Pourmirzaeioliaei, Ye Han, Kai Chen, Mohsen Rezaei, Duolin Wang, Dong Xu
- Submitted to ICLR 2026
- Readers: Everyone
GCP-VQVAE: A Geometry-Complete Language for Protein 3D Structure
Mahdi Pourmirzaei, Alex Morehead, Farzaneh Esmaili, Jarett Zida Ren, Mohammadreza Pourmirzaeioliaei, Dong Xu
- Submitted to ICLR 2026
- Readers: Everyone
GCP-VQVAE: A Geometry-Complete Language for Protein 3D Structure
Mahdi Pourmirzaei, Alex Morehead, Farzaneh Esmaili, Jarett Zida Ren, Mohammadreza Pourmirzaeioliaei, Dong Xu
- NeurIPS2025-AI4Science Poster
- Readers: Everyone
Zero-Shot Protein–Ligand Binding-Residue Prediction from Sequence and SMILES
Mahdi Pourmirzaei, Salhuldin Alqarghuli, Kai Chen, Mohammadreza Pourmirzaeioliaei, Dong Xu
- NeurIPS2025-AI4Science Poster
- Readers: Everyone
Predicting Kinase-Specific Phosphorylation Sites with Pretrained Protein Language Models
Mahdi Pourmirzaei, Farzaneh Esmaili, Kai Chen, Mohammadreza Pourmirzaeioliaei, Mohsen Rezaei, Duolin Wang, Dong Xu
- NeurIPS2025-AI4Science Poster
- Readers: Everyone
BC-Design: A Biochemistry-Aware Framework for Highly Accurate Inverse Protein Folding
Xiangru Tang, Xinwu Ye, Fang Wu, Yanjun Shao, Dong Xu, Mark Gerstein
- GenBio 2025 Poster
- Readers: Everyone
TCM-Ladder: A Benchmark for Multimodal Question Answering on Traditional Chinese Medicine
Jiacheng Xie, Yang Yu, Ziyang Zhang, Shuai Zeng, Jiaxuan He, Ayush Vasireddy, Xiaoting tang, Congyu Guo, Lening Zhao, Congcong Jing, Guanghui An, Dong Xu
- NeurIPS 2025 Datasets and Benchmarks Track poster
- Readers: Everyone
Extending Prot2Token: Aligning Protein Language Models for Unified and Diverse Protein Prediction Tasks
Mahdi Pourmirzaei, Ye Han, Farzaneh Esmaili, Mohammadreza Pourmirzaeioliaei, Salhuldin Alqarghuli, Kai Chen, Dong Xu
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Using Autoregressive-Transformer Model for Protein-Ligand Binding Site Prediction
Mahdi Pourmirzaei, Salhuldin Alqarghuli, Farzaneh Esmaili, Mohammadreza Pourmirzaeioliaei, Mohsen Rezaei, Dong Xu
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Prot2Token: A multi-task framework for protein language processing using autoregressive language modeling
Mahdi Pourmirzaei, Farzaneh Esmaili, Mohammadreza Pourmirzaei, Duolin Wang, Dong Xu
- AccMLBio Poster
- Readers: Everyone

View all 13 publications

Co-Authors

View all 42 co-authors