Fabian Isensee

Principal Researcher, German Cancer Research Center

Joined

July 2019

Names

Fabian Isensee

Emails

****@dkfz.de (Confirmed)

****@dkfz-heidelberg.de (Confirmed)

****@gmail.com (Confirmed)

Personal Links

Google Scholar

ORCID

Career & Education History

Principal Researcher

German Cancer Research Center (dkfz.de)

2020 – Present

PhD student

German Cancer Research Center (dkfz.de)

2015 – 2020

Advisors, Relations & Conflicts

PhD Advisor

Klaus H. Maier-Hein

2015 – 2020

PhD Advisor

Benedikt Brors

2015 – 2020

Expertise

deep learning

2015 – Present

semantic segmentation

2010 – Present

image analysis

2010 – Present

Publications

nnLandmark: A Self-Configuring Method for 3D Medical Landmark Detection
Alexandra Ertl, Stefan Denner, Robin Peretzke, Shuhan Xiao, David Zimmerer, Maximilian Fischer, Markus Ralf Bujotzek, Xin Yang, Peter Neher, Fabian Isensee, Klaus Maier-Hein
- MIDL 2026 Poster
- Readers: Everyone
Finally Outshining the Random Baseline: A Simple and Effective Solution for Active Learning in 3D Biomedical Imaging
Carsten T. Lüth, Jeremias Traub, Kim-Celine Kahl, Till J. Bungert, Lukas Klein, Lars Krämer, Paul F Jaeger, Klaus Maier-Hein, Fabian Isensee
- Accepted by TMLR
- Readers: Everyone
Primus: Enforcing Attention Usage for 3D Medical Image Segmentation
Tassilo Wald, Saikat Roy, Fabian Isensee, Constantin Ulrich, Sebastian Ziegler, Dasha Trofimova, Raphael Stock, Michael Baumgartner, Gregor Koehler, Klaus Maier-Hein
- Submitted to ICLR 2026
- Readers: Everyone
nnActive: A Framework for Evaluation of Active Learning in 3D Biomedical Segmentation
Carsten T. Lüth, Jeremias Traub, Kim-Celine Kahl, Till J. Bungert, Lukas Klein, Lars Krämer, Paul F Jaeger, Fabian Isensee, Klaus Maier-Hein
- Accepted by TMLR
- Readers: Everyone
RecycleNet: Latent Feature Recycling Leads to Iterative Decision Refinement
Gregor Koehler, Tassilo Wald, Constantin Ulrich, David Zimmerer, Paul F Jaeger, Jörg K.H. Franke, Simon Kohl, Fabian Isensee, Klaus Maier-Hein
- 2024 Winter Conference on Applications of Computer Vision (WACV)
- Readers: Everyone
Domain-Specific Benchmarking of Vision-Language Models: A Task Augmentation Framework Using Metadata
Tim Rädsch, Leon Mayer, Simon Pavicic, Ali Emre Kavur, Marcel Knopp, Barış Öztürk, Klaus Maier-Hein, Paul F Jaeger, Fabian Isensee, Annika Reinke, Lena Maier-hein
- ICLR 2025 Workshop Data Problems Poster
- Readers: Everyone
Bridging vision language model (VLM) evaluation gaps with a framework for scalable and cost-effective benchmark generation
Tim Rädsch, Leon Mayer, Simon Pavicic, Ali Emre Kavur, Marcel Knopp, Barış Öztürk, Klaus Maier-Hein, Paul F Jaeger, Fabian Isensee, Annika Reinke, Lena Maier-hein
- ICLR 2025 FM-Wild Workshop
- Readers: Everyone
Domain-specific Benchmarking of Vision-Language Models: A Task Augmentation Framework Using Metadata
Tim Rädsch, Leon Mayer, Simon Pavicic, Ali Emre Kavur, Marcel Knopp, Barış Öztürk, Klaus Maier-Hein, Paul F Jaeger, Fabian Isensee, Annika Reinke, Lena Maier-hein
- ICLR 2025 Conference Withdrawn Submission
- Readers: Everyone
Efficient Cross-Modality Abdominal Organ Segmentation Using nnU-Net and MIND Descriptors
Yannick Kirchhoff, Maximilian Rouven Rokuss, Benjamin Hamm, Ashis Ravindran, Constantin Ulrich, Klaus Maier-Hein, Fabian Isensee
- FLARE 2024 withMinorRevisions
- Readers: Everyone
Optimizing nnU-Net with OpenVINO for Fast CPU Inference in Abdominal Organ Segmentation
Yannick Kirchhoff, Ashis Ravindran, Maximilian Rouven Rokuss, Benjamin Hamm, Constantin Ulrich, Klaus Maier-Hein, Fabian Isensee
- FLARE 2024 withMinorRevisions
- Readers: Everyone

View all 22 publications

Co-Authors

View all 173 co-authors