Hongyu Zheng

Postdoc, Department of Computer Science, Department of Computer Science, Princeton University

Joined

July 2025

Names

Hongyu Zheng (Preferred)

Emails

****@princeton.edu (Confirmed)

****@cs.princeton.edu (Confirmed)

Personal Links

Google Scholar

DBLP

Career & Education History

Postdoc

Department of Computer Science, Department of Computer Science, Princeton University (cs.princeton.edu)

2023 – 2027

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

Creating and Using Minimizer Sketches in Computational Genomics
Hongyu Zheng, Guillaume Marçais, Carl Kingsford
- J. Comput. Biol. 2023
- Readers: Everyone
DeepMinimizer: A Differentiable Framework for Optimizing Sequence-Specific Minimizer Schemes
Minh Hoang, Hongyu Zheng, Carl Kingsford
- Published: 01 Jan 2022, Last Modified: 12 May 2023
- RECOMB 2022
- Readers: Everyone
Differentiable Learning of Sequence-Specific Minimizer Schemes with DeepMinimizer
Minh Hoang, Hongyu Zheng, Carl Kingsford
- Published: 01 Jan 2022, Last Modified: 12 May 2023
- J. Comput. Biol. 2022
- Readers: Everyone
Deriving Ranges of Optimal Estimated Transcript Expression due to Nonidentifiability
Hongyu Zheng, Cong Ma, Carl Kingsford
- Published: 01 Jan 2022, Last Modified: 12 May 2023
- J. Comput. Biol. 2022
- Readers: Everyone
Exact transcript quantification over splice graphs
Cong Ma, Hongyu Zheng, Carl Kingsford
- Published: 01 Jan 2021, Last Modified: 12 May 2023
- Algorithms Mol. Biol. 2021
- Readers: Everyone
Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
- Published: 01 Jan 2021, Last Modified: 12 May 2023
- J. Comput. Biol. 2021
- Readers: Everyone
Sequence-specific minimizers via polar sets
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
- Published: 01 Jan 2021, Last Modified: 12 May 2023
- Bioinform. 2021
- Readers: Everyone
Improved design and analysis of practical minimizers
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
- Published: 01 Jan 2020, Last Modified: 12 May 2023
- Bioinform. 2020
- Readers: Everyone
Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
- Published: 01 Jan 2020, Last Modified: 12 May 2023
- RECOMB 2020
- Readers: Everyone
Exact Transcript Quantification Over Splice Graphs
Cong Ma, Hongyu Zheng, Carl Kingsford
- Published: 01 Jan 2020, Last Modified: 12 May 2023
- WABI 2020
- Readers: Everyone

View all 11 publications