Ivan E. Ivanov

Researcher, Computational Microscopy, Chan Zuckerberg Biohub Network

Joined

September 2024

Names

Ivan E. Ivanov (Preferred)

Emails

****@czbiohub.org (Confirmed)

****@ucsf.edu (Confirmed)

Personal Links

Google Scholar

ORCID

Career & Education History

Researcher

Computational Microscopy, Chan Zuckerberg Biohub Network (czbiohub.org)

2019 – Present

PhD student

Chemical Engineering, Stanford University (stanford.edu)

2012 – 2019

Undergrad student

Chemical Engineering, Worcester Polytechnic Institute (wpi.edu)

2008 – 2012

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

Embedding cell state dynamics via contrastive learning of representations of 3D dynamic imaging datasets
Eduardo Hirata-Miyasaki, Soorya Pradeep, Ziwen Liu, Alishba Imran, Taylla Milena Theodoro, Ivan E. Ivanov, Sudip Khadka, See-Chi Lee, Michelle E Grunberg, Hunter Woosley, Madhura Bhave, Carolina Arias, Shalin B. Mehta
- NeurIPS 2025 Workshop Imageomics
- Readers: Everyone
Robust virtual staining of landmark organelles
Ziwen Liu, Eduardo Hirata-Miyasaki, Soorya Pradeep, Johanna Rahm, Christian Foley, Talon Chandler, Ivan E. Ivanov, Hunter Woosley, Tiger Lao, Akilandeswari Balasubramanian, Rita Marreiros, Chad Liu, Manuel D Leonetti, Ranen Aviner, Carolina Arias, Adrian Jacobo, Shalin B. Mehta
- bioRxiv
- Readers: Everyone
Mantis: High-throughput 4D imaging and analysis of the molecular and physical architecture of cells
Ivan E. Ivanov, Eduardo Hirata-Miyasaki, Talon Chandler, Rasmi Cheloor-Kovilakam, Ziwen Liu, Soorya Pradeep, Chad Liu, Carolina Arias, Manuel D. Leonetti, Bo Huang, Shalin B. Mehta
- PNAS Nexus
- Readers: Everyone
Revealing architectural order with quantitative label-free imaging and deep learning
Syuan-Ming Guo, Li-Hao Yeh, Jenny Folkesson, Ivan E. Ivanov, Anitha Priya Krishnan, Matthew G Keefe, Ezzat Hashemi, David Shin, Nathan Cho, Manuel D Leonetti, May H Han, Tomasz J Nowakowski, Shalin B. Mehta
- eLife
- Readers: Everyone
Contrastive learning of cell state dynamics in response to perturbations
Soorya Pradeep, Alishba Imran, Ziwen Liu, Eduardo Hirata-Miyasaki, Taylla Milena Theodoro, Ivan E. Ivanov, Madhura Bhave, Sudip Khadka, Hunter Woosley, Carolina Arias, Shalin B. Mehta
- Submitted to ICLR 2025
- Readers: Everyone

Co-Authors

View all 34 co-authors

Ivan E. Ivanov

Names

Emails

Personal Links

Career & Education History

Advisors, Relations & Conflicts

Expertise

Publications

Embedding cell state dynamics via contrastive learning of representations of 3D dynamic imaging datasets

Robust virtual staining of landmark organelles

Mantis: High-throughput 4D imaging and analysis of the molecular and physical architecture of cells

Revealing architectural order with quantitative label-free imaging and deep learning

Contrastive learning of cell state dynamics in response to perturbations

Co-Authors