Jiayuan Ding

MS student, University of Southern California

PhD student, Michigan State University

Joined

May 2021

Names

Jiayuan Ding (Preferred)

Emails

****@usc.edu (Confirmed)

****@msu.edu (Confirmed)

****@gmail.com (Confirmed)

****@hippocraticai.com (Confirmed)

Personal Links

Google Scholar

DBLP

Career & Education History

MS student

University of Southern California (usc.edu)

Present

PhD student

Michigan State University (msu.edu)

Present

Advisors, Relations & Conflicts

PhD Advisor

Jiliang Tang

Present

Expertise

Deep Learning

Present

Publications

TRAJECT-Bench:A Trajectory-Aware Benchmark for Evaluating Agentic Tool Use
Pengfei He, Zhenwei Dai, Bing He, Hui Liu, Xianfeng Tang, Hanqing Lu, Juanhui Li, Jiayuan Ding, Subhabrata Mukherjee, Suhang Wang, Yue Xing, Jiliang Tang, Benoit Dumoulin
- ICLR 2026 Poster
- Readers: Everyone
Understanding Graph Self-Supervised Pre-training under Distribution Shifts: A Scaling Law Perspective
Bingheng Li, Shikun Liu, Yu Song, Jay Revolinsky, Haoyu Han, Subhabrata Mukherjee, Jiayuan Ding, Jiliang Tang
- Submitted to ICLR 2026
- Readers: Everyone
Tabula: A Tabular Self-Supervised Foundation Model for Single-Cell Transcriptomics
Jiayuan Ding, Jianhui Lin, Shiyu Jiang, Yixin Wang, Ziyang Miao, Zhaoyu Fang, Jiliang Tang, Min Li, Xiaojie Qiu
- NeurIPS 2025 poster
- Readers: Everyone
A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
Wenzhuo Tang, Renming Liu, Hongzhi Wen, Xinnan Dai, Jiayuan Ding, Hang Li, Wenqi Fan, Yuying Xie, Jiliang Tang
- Submitted to ICLR 2024
- Readers: Everyone
CellPLM: Pre-training of Cell Language Model Beyond Single Cells
Hongzhi Wen, Wenzhuo Tang, Xinnan Dai, Jiayuan Ding, Wei Jin, Yuying Xie, Jiliang Tang
- ICLR 2024 poster
- Readers: Everyone
CellPLM: Pre-training of Cell Language Model Beyond Single Cells
Hongzhi Wen, Wenzhuo Tang, Jiayuan Ding, Wei Jin, Yuying Xie, Jiliang Tang
- Submitted to NeurIPS 2023
- Readers: Everyone
Single-Cell Multimodal Prediction via Transformers
Wenzhuo Tang, Hongzhi Wen, Renming Liu, Jiayuan Ding, Wei Jin, Yuying Xie, Hui Liu, Jiliang Tang
- 2023 (modified: 24 Apr 2023)
- CoRR 2023
- Readers: Everyone
Single Cells Are Spatial Tokens: Transformers for Spatial Transcriptomic Data Imputation
Hongzhi Wen, Wenzhuo Tang, Wei Jin, Jiayuan Ding, Renming Liu, Feng Shi, Yuying Xie, Jiliang Tang
- 2023 (modified: 24 Apr 2023)
- CoRR 2023
- Readers: Everyone
Bi-channel Masked Graph Autoencoders for Spatially Resolved Single-cell Transcriptomics Data Imputation
Hongzhi Wen, Wei Jin, Jiayuan Ding, Christopher Xu, Yuying Xie, Jiliang Tang
- Published: 21 Oct 2022, Last Modified: 05 May 2023
- AI4Science Poster
- Readers: Everyone
Graph Neural Networks for Multimodal Single-Cell Data Integration
Hongzhi Wen, Jiayuan Ding, Wei Jin, Yiqi Wang, Yuying Xie, Jiliang Tang
- Published: 21 Oct 2022, Last Modified: 08 Feb 2026
- AI4Science Poster
- Readers: Everyone

View all 23 publications

Co-Authors

View all 68 co-authors