Jun Zhang

Assistant Professor, National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University

Joined

January 2025

Names

Jun Zhang (Preferred)

Emails

****@szu.edu.cn (Confirmed)

Personal Links

Career & Education History

Assistant Professor

National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University (szu.edu.cn)

2023 – Present

Advisors, Relations & Conflicts

PhD Advisor

Qingcai Chen

2018 – 2022

PhD Advisor

Bin Liu

2018 – 2022

Expertise

Deep learning

2018 – Present

Bioinformatic

2016 – Present

Publications

SaMCL A Multi Task Collaborative Learning Framework for Peptide Protein Interaction Prediction Based on Structure Aware Protein Language Models
Siyi He, Dongzhen Tang, Tiantian Zhu, Zexuan Zhu, Yumeng Liu, Jun Zhang
- Crossref
- Readers: Everyone
Single-round evolution of RNA aptamers with GRAPE-LM
Jun Zhang, Ju Zhang, Shaoxuan Tang, Chuancheng Liu, Yushan Cai, Hao Zeng, Xiangjie Meng, Bei Liu, Yang Zhang, Yu Wang
- Nature Biotechnology
- Readers: Everyone
HiPHD: Hierarchical Classification for Protein Remote Homology Detection by Incorporating Protein Sequential and Structural Information
Fuchuan Qu, Yijin Zhao, Tao Huang, Xinyan Wang, Jun Zhang, Junjie Chen
- IEEE Transactions on Computational Biology and Bioinformatics
- Readers: Everyone
Molecular-level protein semantic learning via structure-aware coarse-grained language modeling
Jun Zhang, Xueer Weng, Tiantian Zhu, Yumeng Liu, Zexuan Zhu, Lenore Cowen
- Bioinformatics
- Readers: Everyone
INAB: identify nucleic acid binding domain via cross-modal protein language models and multiscale computation
Jun Zhang, Hao Zeng, Junjie Chen, Zexuan Zhu
- Briefings in Bioinformatics
- Readers: Everyone
MDTL-ACP: Anticancer Peptides Prediction Based on Multi-Domain Transfer Learning
Junhang Cao, Wei Zhou, Qiyuan Yu, Junkai Ji, Jun Zhang, Shan He, Zexuan Zhu
- IEEE J. Biomed. Health Informatics 2025
- Readers: Everyone
TG-CDDPM: text-guided antimicrobial peptides generation based on conditional denoising diffusion probabilistic model
Junhang Cao, Jun Zhang, Qiyuan Yu, Junkai Ji, Jianqiang Li, Shan He, Zexuan Zhu
- Briefings Bioinform. 2024
- Readers: Everyone
PAIR: protein-aptamer interaction prediction based on language models and contrastive learning framework
Jun Zhang, Zhiqiang Yan, Hao Zeng, Zexuan Zhu
- BIBM 2024
- Readers: Everyone
MIX-TPI: a flexible prediction framework for TCR-pMHC interactions based on multimodal representations
Minghao Yang, Zhi-An Huang, Wei Zhou, Junkai Ji, Jun Zhang, Shan He, Zexuan Zhu
- Bioinform. 2023
- Readers: Everyone
iDRBP-EL: Identifying DNA- and RNA- Binding Proteins Based on Hierarchical Ensemble Learning
Ning Wang, Jun Zhang, Bin Liu
- IEEE ACM Trans. Comput. Biol. Bioinform. 2023
- Readers: Everyone

View all 18 publications

Co-Authors

View all 44 co-authors