Karim Beguir

Joined

June 2021

Names

Karim Beguir (Preferred)

Emails

****@instadeep.com (Confirmed)

Personal Links

Google Scholar

Career & Education History

MS student

NYU, New York University (cims.nyu.edu)

2001 – 2003

MS student

Ensae ParisTech (ensae.fr)

2000 – 2002

Undergrad student

Ecole polytechnique (polytechnique.edu)

1997 – 2000

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

A foundational large language model for edible plant genomes
Javier Mendoza-Revilla, Evan Trop, Liam Gonzalez, Maša Roller, Hugo Dalla-torre, Bernardo P de Almeida, Guillaume Richard, Jonathan Caton, Nicolas Lopez Carranza, Marcin J. Skwark, Alexandre Laterre, Karim Beguir, Thomas PIERROT, Marie Lopez
- communications biology
- Readers: Everyone
ChatNT: A Multimodal Conversational Agent for DNA, RNA and Protein Tasks
Guillaume Richard, Bernardo P de Almeida, Hugo Dalla-torre, Christopher Blum, Lorenz Hexemer, Priyanka Pandey, Stefan Laurent, Marie Lopez, Alexandre Laterre, Maren Lang, Ugur Sahin, Karim Beguir, Thomas PIERROT
- BioArxiv
- Readers: Everyone
SegmentNT: annotating the genome at single-nucleotide resolution with DNA foundation models
Bernardo P de Almeida, Hugo Dalla-torre, Guillaume Richard, Christopher Blum, Lorenz Hexemer, Maxence Gélard, Javier Mendoza-Revilla, Priyanka Pandey, Stefan Laurent, Marie Lopez, Alexandre Laterre, Maren Lang, Ugur Sahin, Karim Beguir, Thomas PIERROT
- BioArxiv
- Readers: Everyone
A long range foundation model for zero-shot predictions in single-cell and spatial transcriptomics data
Ameya Joshi, Raphael Boige, Lee Zamparo, Ugo Tanielian, Juan Jose Garau-Luis, Michail Chatzianastasis, Priyanka Pandey, Janik Sielemann, Alexander Seifert, Martin Brand, Maren Lang, Karim Beguir, Thomas PIERROT
- Submitted to ICLR 2025
- Readers: Everyone
The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Hugo Dalla-Torre, Liam Gonzalez, Javier Mendoza-Revilla, Nicolas Lopez Carranza, Adam Henryk Grzywaczewski, Francesco Oteri, Christian Dallago, Evan Trop, Bernardo P de Almeida, Hassan Sirelkhatim, Guillaume Richard, Marcin J. Skwark, Karim Beguir, Marie Lopez, Thomas PIERROT
- bioarxiv
- Readers: Everyone
Machine learning of force fields towards molecular dynamics simulations of proteins at DFT accuracy
Christoph Brunken, Sebastien Boyer, Mustafa Omar, Bakary N'tji Diallo, Karim Beguir, Nicolas Lopez Carranza, Oliver Bent
- GEM Poster
- Readers: Everyone
Protein binding affinity prediction under multiple substitutions applying eGNNs on residue and atomic graphs combined with language model information: eGRAL
Arturo Fiorellini-Bernardis, Sebastien Boyer, Christoph Brunken, Bakary N'tji Diallo, Karim Beguir, Nicolas Lopez Carranza, Oliver Bent
- GEM Poster
- Readers: Everyone
So ManyFolds, So Little Time: Efficient Protein Structure Prediction with pLMs and MSAs
Thomas D Barrett, Amelia Villegas-Morcillo, Louis Robinson, Benoit Gaujac, David Admète, Elia Saquand, Karim Beguir, Arthur Flajolet
- Published: 21 Oct 2022, Last Modified: 05 May 2023
- AI4Science Poster
- Readers: Everyone
Diversity Policy Gradient for Sample Efficient Quality-Diversity Optimization
Thomas PIERROT, Valentin Macé, Felix Chalumeau, Arthur Flajolet, Geoffrey Cideron, Karim Beguir, Antoine Cully, Olivier Sigaud, Nicolas Perrin-Gilbert
- Published: 23 Apr 2022, Last Modified: 05 May 2023
- ALOE@ICLR2022
- Readers: Everyone

Co-Authors

View all 53 co-authors