Kathleen M. Jagodnik

Researcher, Computer Science, Kansas State University

Joined

January 2026

Names

Kathleen M. Jagodnik (Preferred)

Emails

****@k-state.edu (Confirmed)

Personal Links

Google Scholar

DBLP

ORCID

Career & Education History

Researcher

Computer Science, Kansas State University (k-state.edu)

2025 – 2026

PhD student

Biomedical Engineering, Case Western Reserve University (cwru.edu)

2007 – 2014

Undergrad student

Computer Science, Chemistry, Philosophy, Classical Languages, John Carroll University (jcu.edu)

1996 – 2002

Advisors, Relations & Conflicts

Postdoc Advisor

Alon Bartal

2021 – 2024

PhD Advisor

Robert Kirsch

2011 – 2014

PhD Advisor

Antonie van den Bogert

2008 – 2010

Expertise

Bioinformatics

2014 – 2026

Computational Biology

2014 – 2026

Network Science

2014 – 2026

Publications

DruGNNosis-MoA: Elucidating Drug Mechanisms as Etiological or Palliative With Graph Neural Networks Employing a Large Language Model
Liad Brettler, Eden Berman, Kathleen M. Jagodnik, Alon Bartal
- IEEE J. Biomed. Health Informatics 2025
- Readers: Everyone
Utilizing AI and Social Media Analytics to Discover Adverse Side Effects of GLP-1 Receptor Agonists
Alon Bartal, Kathleen M. Jagodnik, Nava Pliskin, Abraham Seidmann
- CoRR 2024
- Readers: Everyone
Progress in and Opportunities for Applying Information Theory to Computational Biology and Bioinformatics
Alon Bartal, Kathleen M. Jagodnik
- Entropy 2022
- Readers: Everyone
DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules
Eryk Kropiwnicki, Alexander Lachmann, Daniel J. B. Clarke, Zhuorui Xie, Kathleen M. Jagodnik, Avi Ma'ayan
- BMC Bioinform. 2022
- Readers: Everyone
SigCom LINCS: data and metadata search engine for a million gene expression signatures
John Erol Evangelista, Daniel J. B. Clarke, Zhuorui Xie, Alexander Lachmann, Minji Jeon, Kerwin Chen, Kathleen M. Jagodnik, Sherry L. Jenkins, Maxim V. Kuleshov, Megan L. Wojciechowicz, Stephan C. Schürer, Mario Medvedovic, Avi Ma'ayan
- Nucleic Acids Res. 2022
- Readers: Everyone
Role-Aware Information Spread in Online Social Networks
Alon Bartal, Kathleen M. Jagodnik
- Entropy 2021
- Readers: Everyone
Appyters: Turning Jupyter Notebooks into data-driven web apps
Daniel J. B. Clarke, Minji Jeon, Daniel J. Stein, Nicole Moiseyev, Eryk Kropiwnicki, Charles Dai, Zhuorui Xie, Megan L. Wojciechowicz, Skylar Litz, Jason Hom, John Erol Evangelista, Lucas Goldman, Serena Zhang, Christine Yoon, Tahmid Ahamed, Samantha Bhuiyan, Minxuan Cheng, Julie Karam, Kathleen M. Jagodnik, Ingrid Shu et al. (4 additional authors not shown)
- Patterns 2021
- Readers: Everyone
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning
Eryk Kropiwnicki, John Erol Evangelista, Daniel J. Stein, Daniel J. B. Clarke, Alexander Lachmann, Maxim V. Kuleshov, Minji Jeon, Kathleen M. Jagodnik, Avi Ma'ayan
- Database J. Biol. Databases Curation 2021
- Readers: Everyone
EnrichrBot: Twitter bot tracking tweets about human genes
Alon Bartal, Alexander Lachmann, Daniel J. B. Clarke, Allison H. Seiden, Kathleen M. Jagodnik, Avi Ma'ayan
- Bioinform. 2020
- Readers: Everyone
The COVID-19 Drug and Gene Set Library
Maxim V. Kuleshov, Daniel J. Stein, Daniel J. B. Clarke, Eryk Kropiwnicki, Kathleen M. Jagodnik, Alon Bartal, John Erol Evangelista, Jason Hom, Minxuan Cheng, Allison Bailey, Abigail Zhou, Laura B. Ferguson, Alexander Lachmann, Avi Ma'ayan
- Patterns 2020
- Readers: Everyone

View all 20 publications

Co-Authors

View all 100 co-authors