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Lood van Niekerk
Researcher, Ginkgo Bioworks
Joined
September 2022
Names
Lood van Niekerk
(Preferred)
,
Lood Van Niekerk
Emails
****@gmail.com
(Confirmed)
,
****@ginkgobioworks.com
(Confirmed)
Personal Links
Google Scholar
ORCID
LinkedIn
Career & Education History
Researcher
Ginkgo Bioworks
(ginkgobioworks.com)
2024
–
Present
Researcher
Harvard University
(harvard.edu)
2022
–
2024
MS student
University of Oxford
(ox.ac.uk)
2020
–
2021
Advisors, Relations & Conflicts
Coworker
Alyssa Kramer Morrow
2024
–
Present
Coauthor
Ruben Weitzman
2023
–
Present
Coauthor
Debora Marks
2021
–
2023
Coauthor
Pascal Notin
2020
–
2023
Coauthor
Yarin Gal
2020
–
2023
Expertise
diffusion models
2022
–
Present
biology
,
computational biology
,
genetics
,
genomics
2020
–
Present
deep learning
,
proteomics
,
protein language models
,
language models
2020
–
Present
graph neural networks
2020
–
2022
forecasting
,
time series
,
RNNs
2018
–
2018
Publications
Guided Generation for Developable Antibodies
Siqi Zhao
,
Joshua Moller
,
Lood van Niekerk
GenBio 2025 Poster
Readers:
Everyone
Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction
Ruben Weitzman
,
Peter Mørch Groth
,
Lood Van Niekerk
,
Aoi Otani
,
Yarin Gal
,
Debora Susan Marks
,
Pascal Notin
ICML 2025 poster
Readers:
Everyone
ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design
Pascal Notin
,
Aaron W Kollasch
,
Daniel Ritter
,
Lood Van Niekerk
,
Steffan Paul
,
Han Spinner
,
Nathan J Rollins
,
Ada Shaw
,
Ruben Weitzman
,
Jonathan Frazer
,
Mafalda Dias
,
Dinko Franceschi
,
Rose Orenbuch
,
Yarin Gal
,
Debora Susan Marks
NeurIPS 2023 Datasets and Benchmarks Poster
Readers:
Everyone
TranceptEVE: Combining Family-specific and Family-agnostic Models of Protein Sequences for Improved Fitness Prediction
Pascal Notin
,
Lood Van Niekerk
,
Aaron W Kollasch
,
Daniel Ritter
,
Yarin Gal
,
Debora Susan Marks
09 Oct 2022 (modified: 05 May 2023)
LMRL 2022 Paper
Readers:
Everyone
Co-Authors
Aaron W Kollasch
Ada Shaw
Aoi Otani
Daniel Ritter
Debora Susan Marks
Dinko Franceschi
Han Spinner
Jonathan Frazer
Joshua Moller
Mafalda Dias
Nathan J Rollins
Pascal Notin
Peter Mørch Groth
Rose Orenbuch
Ruben Weitzman
Siqi Zhao
Steffan Paul
Yarin Gal