Mahdi Pourmirzaei

PhD student, University of Missouri

Joined

February 2024

Names

Mahdi Pourmirzaei (Preferred)

Emails

****@gmail.com (Confirmed)

****@umsystem.edu (Confirmed)

Personal Links

Homepage

Google Scholar

Career & Education History

PhD student

University of Missouri (umsystem.edu)

2023 – 2028

MS student

Tarbiat Modares University (modares.ac.ir)

2018 – 2021

Advisors, Relations & Conflicts

No relations added

Expertise

No areas of expertise listed

Publications

Prot2Token: A Unified Framework for Protein Modeling via Next-Token Prediction
Mahdi Pourmirzaei, Farzaneh Esmaili, Salhuldin Alqarghuli, Mohammadreza Pourmirzaeioliaei, Ye Han, Kai Chen, Mohsen Rezaei, Duolin Wang, Dong Xu
- Submitted to ICLR 2026
- Readers: Everyone
GCP-VQVAE: A Geometry-Complete Language for Protein 3D Structure
Mahdi Pourmirzaei, Alex Morehead, Farzaneh Esmaili, Jarett Zida Ren, Mohammadreza Pourmirzaeioliaei, Dong Xu
- Submitted to ICLR 2026
- Readers: Everyone
GCP-VQVAE: A Geometry-Complete Language for Protein 3D Structure
Mahdi Pourmirzaei, Alex Morehead, Farzaneh Esmaili, Jarett Zida Ren, Mohammadreza Pourmirzaeioliaei, Dong Xu
- NeurIPS2025-AI4Science Poster
- Readers: Everyone
Zero-Shot Protein–Ligand Binding-Residue Prediction from Sequence and SMILES
Mahdi Pourmirzaei, Salhuldin Alqarghuli, Kai Chen, Mohammadreza Pourmirzaeioliaei, Dong Xu
- NeurIPS2025-AI4Science Poster
- Readers: Everyone
Predicting Kinase-Specific Phosphorylation Sites with Pretrained Protein Language Models
Mahdi Pourmirzaei, Farzaneh Esmaili, Kai Chen, Mohammadreza Pourmirzaeioliaei, Mohsen Rezaei, Duolin Wang, Dong Xu
- NeurIPS2025-AI4Science Poster
- Readers: Everyone
Extending Prot2Token: Aligning Protein Language Models for Unified and Diverse Protein Prediction Tasks
Mahdi Pourmirzaei, Ye Han, Farzaneh Esmaili, Mohammadreza Pourmirzaeioliaei, Salhuldin Alqarghuli, Kai Chen, Dong Xu
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Using Autoregressive-Transformer Model for Protein-Ligand Binding Site Prediction
Mahdi Pourmirzaei, Salhuldin Alqarghuli, Farzaneh Esmaili, Mohammadreza Pourmirzaeioliaei, Mohsen Rezaei, Dong Xu
- ICLR 2025 Workshop LMRL
- Readers: Everyone
Prot2Token: A multi-task framework for protein language processing using autoregressive language modeling
Mahdi Pourmirzaei, Farzaneh Esmaili, Mohammadreza Pourmirzaei, Duolin Wang, Dong Xu
- AccMLBio Poster
- Readers: Everyone